Wall clock time and date at job start Tue Mar 9 2021 13:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 H 1.09007 * 109.46776 * 90.75293 * 3 2 1 5 5 C 1.52998 * 109.47086 * 210.75310 * 3 2 1 6 6 C 1.53006 * 109.47045 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.46938 * 300.00048 * 6 5 3 8 8 H 1.09002 * 109.47283 * 300.00171 * 7 6 5 9 9 N 1.46496 * 109.47246 * 180.02562 * 7 6 5 10 10 C 1.34777 * 120.00258 * 155.00083 * 9 7 6 11 11 O 1.21279 * 120.00166 * 359.97438 * 10 9 7 12 12 C 1.50706 * 119.99762 * 179.97438 * 10 9 7 13 13 N 1.46500 * 109.46949 * 179.97438 * 12 10 9 14 14 C 1.35034 * 125.93526 * 124.99550 * 13 12 10 15 15 C 1.35084 * 107.98554 * 179.97438 * 14 13 12 16 16 C 1.50698 * 126.07644 * 180.02562 * 15 14 13 17 17 O 1.42905 * 109.47060 * 254.97680 * 16 15 14 18 18 Si 1.86298 * 109.47360 * 14.97424 * 16 15 14 19 19 C 1.40843 * 107.84538 * 0.02562 * 15 14 13 20 20 C 1.48422 * 126.03551 * 180.02562 * 19 15 14 21 21 C 1.39322 * 120.12333 * 324.72482 * 20 19 15 22 22 C 1.38019 * 119.87951 * 179.76446 * 21 20 19 23 23 C 1.38314 * 120.11791 * 0.48769 * 22 21 20 24 24 C 1.38319 * 120.24761 * 359.78792 * 23 22 21 25 25 C 1.38025 * 120.11449 * 359.95631 * 24 23 22 26 26 N 1.31620 * 107.92746 * 359.71792 * 19 15 14 27 27 C 1.52998 * 109.47292 * 60.00103 * 7 6 5 28 28 C 1.52998 * 109.47293 * 330.75600 * 3 2 1 29 29 H 4.18740 * 15.04023 * 359.97438 * 4 2 1 30 30 H 1.08994 * 109.47090 * 60.00172 * 5 3 2 31 31 H 1.09001 * 109.47093 * 300.00140 * 5 3 2 32 32 H 1.08997 * 109.47258 * 180.02562 * 6 5 3 33 33 H 1.09000 * 109.47309 * 59.99450 * 6 5 3 34 34 H 0.96999 * 119.99694 * 334.99473 * 9 7 6 35 35 H 1.09000 * 109.47318 * 299.99141 * 12 10 9 36 36 H 1.09000 * 109.47161 * 59.99772 * 12 10 9 37 37 H 1.08007 * 126.00495 * 0.02562 * 14 13 12 38 38 H 1.08990 * 109.47340 * 134.98139 * 16 15 14 39 39 H 0.96701 * 114.00231 * 180.02562 * 17 16 15 40 40 H 1.48504 * 110.00183 * 178.68062 * 18 16 15 41 41 H 1.48500 * 110.00063 * 300.00412 * 18 16 15 42 42 H 1.08005 * 120.05536 * 359.97438 * 21 20 19 43 43 H 1.08001 * 119.93906 * 180.27723 * 22 21 20 44 44 H 1.08004 * 119.87808 * 179.76554 * 23 22 21 45 45 H 1.07995 * 119.94719 * 179.97438 * 24 23 22 46 46 H 1.08007 * 120.05950 * 180.02562 * 25 24 23 47 47 H 1.08994 * 109.47090 * 60.00118 * 27 7 6 48 48 H 1.09001 * 109.47093 * 180.02562 * 27 7 6 49 49 H 1.08994 * 109.46957 * 299.99873 * 28 3 2 50 50 H 1.09003 * 109.47467 * 60.00287 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0093 0.0143 -1.0277 5 6 3.1554 1.2405 0.7376 6 6 4.6855 1.2415 0.7370 7 6 5.1965 -0.0169 1.4414 8 1 4.8335 -0.0308 2.4691 9 7 6.6615 -0.0157 1.4415 10 6 7.3359 -0.6974 2.3885 11 8 6.7301 -1.3115 3.2409 12 6 8.8430 -0.6966 2.3881 13 7 9.3320 -1.5029 3.5091 14 6 10.1879 -2.5438 3.4227 15 6 10.3922 -3.0206 4.6700 16 6 11.2786 -4.1810 5.0423 17 8 10.4702 -5.3187 5.3494 18 14 12.4040 -4.5862 3.6140 19 6 9.6294 -2.2404 5.5606 20 6 9.5568 -2.4154 7.0326 21 6 9.6096 -3.6919 7.5884 22 6 9.5466 -3.8485 8.9583 23 6 9.4212 -2.7418 9.7783 24 6 9.3626 -1.4726 9.2316 25 6 9.4300 -1.3041 7.8634 26 7 8.9974 -1.3245 4.8576 27 6 4.6871 -1.2567 0.7038 28 6 3.1566 -1.2577 0.7047 29 1 -1.0500 -0.0005 0.0001 30 1 2.7921 1.2268 1.7651 31 1 2.7916 2.1370 0.2355 32 1 5.0484 2.1246 1.2629 33 1 5.0485 1.2553 -0.2907 34 1 7.1460 0.4757 0.7598 35 1 9.2063 -1.1184 1.4510 36 1 9.2058 0.3261 2.4910 37 1 10.6318 -2.9272 2.5157 38 1 11.8779 -3.9156 5.9132 39 1 10.9755 -6.1045 5.5987 40 1 13.3052 -5.7083 3.9799 41 1 11.5989 -4.9498 2.4204 42 1 9.7030 -4.5570 6.9486 43 1 9.5919 -4.8373 9.3904 44 1 9.3685 -2.8691 10.8495 45 1 9.2643 -0.6119 9.8765 46 1 9.3846 -0.3126 7.4375 47 1 5.0501 -1.2428 -0.3238 48 1 5.0508 -2.1532 1.2059 49 1 2.7933 -1.2714 1.7322 50 1 2.7937 -2.1411 0.1792 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12865462_12622748.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:11:10 Heat of formation + Delta-G solvation = 93.111454 kcal Electronic energy + Delta-G solvation = -32089.364906 eV Core-core repulsion = 27858.152329 eV Total energy + Delta-G solvation = -4231.212577 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 366.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.48161 -41.11164 -39.83713 -39.36594 -37.86151 -35.93060 -34.83202 -33.58465 -32.39686 -31.89910 -31.89137 -31.50066 -30.29776 -28.46207 -25.93538 -24.60493 -23.83802 -23.62959 -23.44240 -21.76064 -21.50621 -21.21933 -20.71127 -19.09421 -18.51716 -18.48321 -18.29990 -17.71226 -17.02189 -16.65506 -16.37507 -16.10509 -15.89136 -15.85334 -15.60959 -15.28682 -15.19935 -15.11128 -14.82395 -14.51752 -14.34819 -14.21336 -14.04333 -13.95640 -13.67073 -13.63357 -13.31236 -13.24448 -12.81860 -12.77249 -12.38931 -12.35533 -12.21365 -12.15592 -11.97292 -11.85978 -11.67367 -11.46951 -11.26839 -11.01576 -10.95330 -10.64468 -10.30917 -10.14441 -9.87074 -9.74940 -9.28693 -4.84984 0.07395 0.47663 0.78860 1.31928 1.41087 1.48906 1.67838 1.69447 1.81962 1.85390 2.01516 2.07972 2.89276 3.30347 3.36583 3.56831 3.59671 3.64234 3.69226 3.75288 3.92323 4.03309 4.04130 4.11020 4.11687 4.14296 4.15393 4.19116 4.30131 4.33443 4.37510 4.40773 4.41753 4.53034 4.62627 4.63805 4.70447 4.79062 4.86725 4.97282 4.99866 5.01516 5.06208 5.08334 5.17455 5.18179 5.24781 5.31498 5.32282 5.45141 5.57642 5.61559 5.64524 5.90955 6.06115 6.48578 6.59605 6.65457 6.69514 7.18989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.211 4.211 3 C 0.022 3.978 4 H 0.111 0.889 5 C -0.106 4.106 6 C -0.113 4.113 7 C 0.147 3.853 8 H 0.053 0.947 9 N -0.706 5.706 10 C 0.493 3.507 11 O -0.569 6.569 12 C 0.110 3.890 13 N -0.359 5.359 14 C 0.073 3.927 15 C -0.227 4.227 16 C -0.054 4.054 17 O -0.555 6.555 18 Si 0.782 3.218 19 C 0.108 3.892 20 C -0.038 4.038 21 C -0.116 4.116 22 C -0.129 4.129 23 C -0.117 4.117 24 C -0.130 4.130 25 C -0.109 4.109 26 N -0.294 5.294 27 C -0.119 4.119 28 C -0.105 4.105 29 H 0.237 0.763 30 H 0.053 0.947 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.423 0.577 35 H 0.178 0.822 36 H 0.148 0.852 37 H 0.215 0.785 38 H 0.075 0.925 39 H 0.392 0.608 40 H -0.287 1.287 41 H -0.280 1.280 42 H 0.151 0.849 43 H 0.144 0.856 44 H 0.146 0.854 45 H 0.143 0.857 46 H 0.118 0.882 47 H 0.091 0.909 48 H 0.043 0.957 49 H 0.048 0.952 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.068 3.608 -6.879 9.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.211 4.211 3 C 0.004 3.996 4 H 0.129 0.871 5 C -0.144 4.144 6 C -0.151 4.151 7 C 0.042 3.958 8 H 0.072 0.928 9 N -0.360 5.360 10 C 0.279 3.721 11 O -0.446 6.446 12 C -0.014 4.014 13 N -0.141 5.141 14 C -0.072 4.072 15 C -0.238 4.238 16 C -0.162 4.162 17 O -0.365 6.365 18 Si 0.684 3.316 19 C -0.057 4.057 20 C -0.040 4.040 21 C -0.135 4.135 22 C -0.147 4.147 23 C -0.135 4.135 24 C -0.148 4.148 25 C -0.128 4.128 26 N -0.115 5.115 27 C -0.158 4.158 28 C -0.144 4.144 29 H 0.254 0.746 30 H 0.072 0.928 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.119 0.881 34 H 0.261 0.739 35 H 0.196 0.804 36 H 0.165 0.835 37 H 0.232 0.768 38 H 0.093 0.907 39 H 0.242 0.758 40 H -0.214 1.214 41 H -0.207 1.207 42 H 0.168 0.832 43 H 0.162 0.838 44 H 0.164 0.836 45 H 0.160 0.840 46 H 0.136 0.864 47 H 0.110 0.890 48 H 0.062 0.938 49 H 0.067 0.933 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.571 4.107 -7.116 9.402 hybrid contribution -0.486 -1.552 0.774 1.802 sum 4.085 2.555 -6.342 7.964 Atomic orbital electron populations 1.25700 0.97017 0.99903 1.00483 1.23644 0.95332 1.01200 1.00964 1.18446 0.83565 0.95852 1.01700 0.87132 1.21482 0.95320 0.97155 1.00410 1.21748 0.94701 0.96078 1.02594 1.20915 0.79346 0.96002 0.99505 0.92841 1.45796 1.06907 1.52187 1.31138 1.21163 0.90945 0.78883 0.81133 1.90834 1.70800 1.44183 1.38772 1.22030 0.90594 1.00012 0.88725 1.48098 1.34891 1.25848 1.05225 1.22750 0.94378 0.90107 0.99965 1.19609 1.09133 1.02861 0.92199 1.24381 0.97164 0.84832 1.09807 1.86531 1.37675 1.22843 1.89480 0.94080 0.77250 0.85667 0.74572 1.20901 0.96237 0.94826 0.93779 1.18058 1.03096 0.94514 0.88283 1.22011 0.97927 0.97208 0.96331 1.21420 1.00205 1.00116 0.92974 1.21603 0.98365 0.92333 1.01220 1.21361 1.00388 0.98637 0.94413 1.21321 0.99292 0.98049 0.94162 1.77663 1.21994 1.23928 0.87927 1.21834 0.94728 0.97427 1.01796 1.21465 0.95250 0.97368 1.00272 0.74613 0.92809 0.89872 0.89917 0.88141 0.73863 0.80449 0.83477 0.76838 0.90660 0.75780 1.21415 1.20692 0.83161 0.83781 0.83584 0.83956 0.86402 0.88999 0.93803 0.93308 0.91317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -0.72 19.25 74.32 1.43 0.71 16 2 C -0.21 -0.92 12.56 31.12 0.39 -0.52 16 3 C 0.02 -0.01 2.56 -12.60 -0.03 -0.04 16 4 H 0.11 -0.44 8.14 -2.38 -0.02 -0.46 16 5 C -0.11 0.26 5.16 30.60 0.16 0.42 16 6 C -0.11 0.73 5.39 30.60 0.16 0.90 16 7 C 0.15 -0.16 2.45 44.99 0.11 -0.05 16 8 H 0.05 0.37 7.58 -2.39 -0.02 0.36 16 9 N -0.71 3.48 5.08 -442.54 -2.25 1.23 16 10 C 0.49 1.23 7.82 87.66 0.69 1.92 16 11 O -0.57 -9.20 15.38 -3.03 -0.05 -9.24 16 12 C 0.11 -0.58 6.98 85.63 0.60 0.02 16 13 N -0.36 -1.79 3.40 -351.90 -1.19 -2.99 16 14 C 0.07 0.16 9.96 83.47 0.83 1.00 16 15 C -0.23 -1.61 5.37 -19.95 -0.11 -1.72 16 16 C -0.05 -0.11 2.00 71.24 0.14 0.03 16 17 O -0.56 -2.24 10.08 -148.98 -1.50 -3.74 16 18 Si 0.78 -2.63 30.78 68.60 2.11 -0.52 16 19 C 0.11 1.42 6.74 42.53 0.29 1.70 16 20 C -0.04 -0.48 5.80 -20.04 -0.12 -0.60 16 21 C -0.12 -1.15 8.94 22.48 0.20 -0.95 16 22 C -0.13 -0.79 10.03 22.24 0.22 -0.56 16 23 C -0.12 -0.58 10.04 22.31 0.22 -0.36 16 24 C -0.13 -0.87 10.03 22.24 0.22 -0.65 16 25 C -0.11 -1.19 9.75 22.48 0.22 -0.97 16 26 N -0.29 -4.14 11.65 -48.16 -0.56 -4.70 16 27 C -0.12 0.02 5.50 30.61 0.17 0.19 16 28 C -0.11 -0.17 5.16 30.61 0.16 -0.01 16 29 H 0.24 -0.68 7.80 -4.42 -0.03 -0.71 16 30 H 0.05 0.06 8.14 -2.39 -0.02 0.04 16 31 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 32 H 0.08 -0.59 8.14 -2.39 -0.02 -0.61 16 33 H 0.10 -1.13 8.14 -2.39 -0.02 -1.15 16 34 H 0.42 -5.84 8.60 -92.71 -0.80 -6.64 16 35 H 0.18 -2.80 8.07 -2.39 -0.02 -2.82 16 36 H 0.15 -1.61 8.14 -2.39 -0.02 -1.63 16 37 H 0.22 -1.44 6.36 -2.91 -0.02 -1.46 16 38 H 0.08 0.07 7.84 -2.39 -0.02 0.06 16 39 H 0.39 -1.80 8.74 -74.06 -0.65 -2.45 16 40 H -0.29 -0.33 7.11 99.48 0.71 0.38 16 41 H -0.28 -0.25 7.04 99.48 0.70 0.45 16 42 H 0.15 1.40 4.52 -2.91 -0.01 1.39 16 43 H 0.14 0.15 8.06 -2.91 -0.02 0.13 16 44 H 0.15 -0.07 8.06 -2.91 -0.02 -0.09 16 45 H 0.14 0.28 8.06 -2.91 -0.02 0.26 16 46 H 0.12 1.27 8.06 -2.91 -0.02 1.25 16 47 H 0.09 -0.45 8.14 -2.39 -0.02 -0.47 16 48 H 0.04 0.26 8.14 -2.39 -0.02 0.24 16 49 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 50 H 0.07 0.13 8.14 -2.39 -0.02 0.11 16 Total: 0.00 -35.50 415.18 2.07 -33.43 By element: Atomic # 1 Polarization: -13.46 SS G_CDS: -0.45 Total: -13.91 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: 5.96 Total: 0.45 kcal Atomic # 7 Polarization: -2.46 SS G_CDS: -4.00 Total: -6.46 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: -1.55 Total: -12.99 kcal Atomic # 14 Polarization: -2.63 SS G_CDS: 2.11 Total: -0.52 kcal Total: -35.50 2.07 -33.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12865462_12622748.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.541 kcal (2) G-P(sol) polarization free energy of solvation -35.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds