Wall clock time and date at job start Tue Mar 9 2021 13:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 H 1.08993 * 109.47107 * 273.53909 * 3 2 1 5 5 C 1.52999 * 109.47112 * 33.54772 * 3 2 1 6 6 C 1.52997 * 109.46991 * 180.02562 * 5 3 2 7 7 C 1.52996 * 109.47131 * 299.99311 * 6 5 3 8 8 H 1.08996 * 109.47452 * 300.00000 * 7 6 5 9 9 N 1.46507 * 109.47258 * 179.97438 * 7 6 5 10 10 C 1.34778 * 119.99609 * 85.00044 * 9 7 6 11 11 O 1.21581 * 120.00180 * 0.02562 * 10 9 7 12 12 C 1.47604 * 119.99894 * 180.02562 * 10 9 7 13 13 C 1.39722 * 120.08535 * 0.02562 * 12 10 9 14 14 C 1.37723 * 119.90789 * 180.02562 * 13 12 10 15 15 C 1.50697 * 119.95416 * 180.02562 * 14 13 12 16 16 C 1.38975 * 120.08744 * 359.97438 * 14 13 12 17 17 O 1.35715 * 119.90764 * 180.02562 * 16 14 13 18 18 C 1.39015 * 120.17841 * 0.02610 * 16 14 13 19 19 C 1.50706 * 119.95417 * 179.97438 * 18 16 14 20 20 O 1.42905 * 109.47007 * 74.99862 * 19 18 16 21 21 Si 1.86293 * 109.46861 * 194.99649 * 19 18 16 22 22 C 1.37677 * 120.08828 * 359.66887 * 18 16 14 23 23 C 1.53002 * 109.46972 * 60.00459 * 7 6 5 24 24 C 1.52997 * 109.46817 * 299.99733 * 23 7 6 25 25 H 4.18735 * 15.03790 * 0.02562 * 4 2 1 26 26 H 1.09002 * 109.46719 * 299.99744 * 5 3 2 27 27 H 1.08993 * 109.47839 * 59.99586 * 5 3 2 28 28 H 1.09001 * 109.47289 * 179.97438 * 6 5 3 29 29 H 1.09000 * 109.47611 * 59.99933 * 6 5 3 30 30 H 0.97001 * 120.00071 * 265.00501 * 9 7 6 31 31 H 1.07997 * 120.04428 * 359.97438 * 13 12 10 32 32 H 1.08994 * 109.47163 * 89.99992 * 15 14 13 33 33 H 1.09005 * 109.46947 * 210.00425 * 15 14 13 34 34 H 1.09000 * 109.46826 * 329.99702 * 15 14 13 35 35 H 0.96698 * 114.00137 * 90.00396 * 17 16 14 36 36 H 1.08991 * 109.46958 * 314.99985 * 19 18 16 37 37 H 0.96702 * 113.99996 * 59.99851 * 20 19 18 38 38 H 1.48501 * 110.00094 * 180.02562 * 21 19 18 39 39 H 1.48502 * 110.00082 * 301.31665 * 21 19 18 40 40 H 1.08005 * 120.04537 * 180.32343 * 22 18 16 41 41 H 1.09002 * 109.47070 * 179.97438 * 23 7 6 42 42 H 1.08996 * 109.47407 * 59.99513 * 23 7 6 43 43 H 1.09001 * 109.47502 * 300.00518 * 24 23 7 44 44 H 1.09001 * 109.47289 * 180.02562 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0093 -0.0626 1.0256 5 6 3.1565 -1.2013 -0.7972 6 6 4.6865 -1.2010 -0.7966 7 6 5.1964 0.0906 -1.4389 8 1 4.8335 0.1542 -2.4647 9 7 6.6615 0.0913 -1.4379 10 6 7.3363 -0.5176 -2.4331 11 8 6.7293 -1.0670 -3.3319 12 6 8.8123 -0.5175 -2.4317 13 6 9.5118 0.1128 -1.3994 14 6 10.8890 0.1112 -1.4021 15 6 11.6444 0.7902 -0.2889 16 6 11.5830 -0.5168 -2.4295 17 8 12.9401 -0.5166 -2.4282 18 6 10.8907 -1.1450 -3.4584 19 6 11.6483 -1.8239 -4.5703 20 8 12.1893 -3.0579 -4.0939 21 14 10.4939 -2.1602 -5.9932 22 6 9.5140 -1.1532 -3.4597 23 6 4.6859 1.2927 -0.6418 24 6 3.1560 1.2923 -0.6424 25 1 -1.0500 -0.0005 0.0000 26 1 2.7936 -2.1215 -0.3393 27 1 2.7932 -1.1380 -1.8228 28 1 5.0503 -2.0575 -1.3641 29 1 5.0496 -1.2646 0.2292 30 1 7.1458 0.5298 -0.7209 31 1 8.9732 0.6013 -0.6009 32 1 11.8266 0.0766 0.5146 33 1 12.5967 1.1603 -0.6690 34 1 11.0565 1.6249 0.0927 35 1 13.3331 -1.2705 -1.9674 36 1 12.4591 -1.1770 -4.9052 37 1 11.5229 -3.6839 -3.7789 38 1 11.2287 -2.8301 -7.0961 39 1 9.3668 -3.0152 -5.5417 40 1 8.9769 -1.6460 -4.2567 41 1 5.0496 2.2129 -1.0992 42 1 5.0489 1.2291 0.3840 43 1 2.7929 1.3558 -1.6682 44 1 2.7922 2.1489 -0.0749 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12865462_13287732.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:11:44 Heat of formation + Delta-G solvation = -41.166781 kcal Electronic energy + Delta-G solvation = -26083.027069 eV Core-core repulsion = 22353.915040 eV Total energy + Delta-G solvation = -3729.112029 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 316.151 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.78408 -40.77526 -39.38865 -37.97550 -37.49237 -35.95888 -34.03089 -33.62484 -31.91738 -31.84364 -29.84204 -27.97261 -26.89518 -25.25723 -23.77917 -23.49456 -22.06876 -21.50528 -21.02649 -19.58881 -19.05380 -18.77441 -18.11863 -17.61270 -16.86816 -16.46952 -16.31952 -16.10252 -15.92092 -15.78248 -15.46846 -15.20846 -15.16094 -14.71680 -14.37734 -14.09783 -14.06194 -13.91241 -13.83335 -13.31078 -13.24705 -12.90793 -12.80765 -12.71256 -12.48148 -12.30312 -12.15758 -11.93874 -11.91210 -11.65454 -11.60715 -11.10798 -10.95144 -10.89899 -10.64751 -10.19559 -9.96660 -9.63829 -5.01872 -0.38918 0.07699 1.19992 1.50125 1.61292 1.83041 1.86475 1.89550 2.02343 2.56207 3.14806 3.33169 3.37668 3.47613 3.58174 3.65842 3.71554 3.75266 4.02198 4.09058 4.14908 4.19776 4.23354 4.36082 4.40522 4.43321 4.47074 4.50193 4.64007 4.69432 4.74380 4.75556 4.83528 4.99954 5.05337 5.06307 5.10235 5.12130 5.13511 5.21986 5.22857 5.30205 5.34347 5.36122 5.47470 5.61181 6.39036 6.46519 6.69717 6.71481 7.13518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.210 4.210 3 C 0.021 3.979 4 H 0.107 0.893 5 C -0.104 4.104 6 C -0.122 4.122 7 C 0.144 3.856 8 H 0.067 0.933 9 N -0.705 5.705 10 C 0.559 3.441 11 O -0.579 6.579 12 C -0.150 4.150 13 C -0.053 4.053 14 C -0.119 4.119 15 C -0.112 4.112 16 C 0.157 3.843 17 O -0.497 6.497 18 C -0.152 4.152 19 C -0.060 4.060 20 O -0.539 6.539 21 Si 0.743 3.257 22 C -0.067 4.067 23 C -0.116 4.116 24 C -0.104 4.104 25 H 0.237 0.763 26 H 0.068 0.932 27 H 0.055 0.945 28 H 0.049 0.951 29 H 0.086 0.914 30 H 0.416 0.584 31 H 0.165 0.835 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.412 0.588 36 H 0.127 0.873 37 H 0.385 0.615 38 H -0.291 1.291 39 H -0.290 1.290 40 H 0.131 0.869 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.059 0.941 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.795 4.325 6.713 8.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.210 4.210 3 C 0.003 3.997 4 H 0.125 0.875 5 C -0.142 4.142 6 C -0.161 4.161 7 C 0.040 3.960 8 H 0.085 0.915 9 N -0.357 5.357 10 C 0.347 3.653 11 O -0.459 6.459 12 C -0.153 4.153 13 C -0.071 4.071 14 C -0.120 4.120 15 C -0.169 4.169 16 C 0.111 3.889 17 O -0.310 6.310 18 C -0.153 4.153 19 C -0.171 4.171 20 O -0.347 6.347 21 Si 0.649 3.351 22 C -0.086 4.086 23 C -0.154 4.154 24 C -0.142 4.142 25 H 0.253 0.747 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.104 0.896 30 H 0.254 0.746 31 H 0.182 0.818 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.272 0.728 36 H 0.144 0.856 37 H 0.234 0.766 38 H -0.218 1.218 39 H -0.217 1.217 40 H 0.148 0.852 41 H 0.103 0.897 42 H 0.114 0.886 43 H 0.077 0.923 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.509 4.156 5.110 6.606 hybrid contribution -0.124 -1.557 0.832 1.770 sum 0.385 2.598 5.942 6.496 Atomic orbital electron populations 1.25684 0.97004 0.99983 1.00521 1.23626 0.95288 1.01135 1.00921 1.18455 0.83550 0.96172 1.01545 0.87489 1.21447 0.94937 0.97674 1.00140 1.21854 0.94939 0.97306 1.01985 1.21042 0.78632 0.95941 1.00424 0.91459 1.45841 1.07294 1.56297 1.26285 1.18397 0.87465 0.77844 0.81585 1.90794 1.70712 1.46379 1.38055 1.19806 0.92260 1.04706 0.98519 1.21384 0.93206 0.95754 0.96767 1.20453 0.94018 1.00525 0.96999 1.20771 1.00331 1.00634 0.95113 1.18448 0.83643 0.94499 0.92302 1.84627 1.15012 1.51481 1.79891 1.20478 0.93246 1.02269 0.99314 1.24820 1.04961 0.86917 1.00377 1.86577 1.37629 1.26893 1.83610 0.93937 0.75535 0.89015 0.76610 1.21116 0.93006 0.96752 0.97703 1.21765 0.94940 0.96929 1.01730 1.21471 0.95016 0.96476 1.01253 0.74684 0.91344 0.92626 0.93238 0.89581 0.74552 0.81756 0.89808 0.91124 0.89460 0.72811 0.85567 0.76557 1.21835 1.21675 0.85203 0.89693 0.88633 0.92252 0.90006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -0.48 19.25 74.32 1.43 0.95 16 2 C -0.21 -0.65 12.56 31.13 0.39 -0.26 16 3 C 0.02 -0.03 2.56 -12.60 -0.03 -0.07 16 4 H 0.11 -0.48 8.14 -2.39 -0.02 -0.50 16 5 C -0.10 0.01 5.16 30.59 0.16 0.17 16 6 C -0.12 0.13 5.49 30.59 0.17 0.30 16 7 C 0.14 -0.27 2.45 44.99 0.11 -0.16 16 8 H 0.07 0.26 7.58 -2.39 -0.02 0.24 16 9 N -0.71 2.15 5.03 -445.63 -2.24 -0.09 16 10 C 0.56 2.42 7.73 86.72 0.67 3.09 16 11 O -0.58 -7.76 16.00 -3.97 -0.06 -7.82 16 12 C -0.15 -0.21 5.88 -20.08 -0.12 -0.33 16 13 C -0.05 0.24 9.18 22.51 0.21 0.44 16 14 C -0.12 0.39 5.89 -19.81 -0.12 0.27 16 15 C -0.11 0.82 9.78 71.24 0.70 1.51 16 16 C 0.16 -0.03 6.66 22.63 0.15 0.13 16 17 O -0.50 0.54 11.85 -90.37 -1.07 -0.53 16 18 C -0.15 -0.22 5.26 -19.81 -0.10 -0.32 16 19 C -0.06 -0.08 2.37 71.24 0.17 0.08 16 20 O -0.54 -1.15 12.88 -148.98 -1.92 -3.07 16 21 Si 0.74 1.97 30.26 68.60 2.08 4.04 16 22 C -0.07 -0.23 8.20 22.50 0.18 -0.05 16 23 C -0.12 0.83 5.39 30.59 0.16 0.99 16 24 C -0.10 0.40 5.16 30.60 0.16 0.56 16 25 H 0.24 -0.91 7.80 -4.42 -0.03 -0.95 16 26 H 0.07 0.03 8.14 -2.39 -0.02 0.01 16 27 H 0.05 0.16 8.14 -2.39 -0.02 0.14 16 28 H 0.05 0.21 8.14 -2.39 -0.02 0.19 16 29 H 0.09 -0.40 8.14 -2.39 -0.02 -0.42 16 30 H 0.42 -4.21 6.62 -92.71 -0.61 -4.82 16 31 H 0.17 -1.96 6.39 -2.91 -0.02 -1.97 16 32 H 0.08 -0.76 8.14 -2.39 -0.02 -0.78 16 33 H 0.07 -0.36 7.53 -2.38 -0.02 -0.38 16 34 H 0.09 -0.88 8.08 -2.39 -0.02 -0.90 16 35 H 0.41 -3.11 9.06 -74.06 -0.67 -3.78 16 36 H 0.13 0.12 7.82 -2.39 -0.02 0.10 16 37 H 0.39 -1.13 8.70 -74.06 -0.64 -1.77 16 38 H -0.29 -2.56 7.11 99.48 0.71 -1.85 16 39 H -0.29 -2.37 6.67 99.48 0.66 -1.71 16 40 H 0.13 0.79 4.44 -2.91 -0.01 0.78 16 41 H 0.08 -0.69 8.14 -2.39 -0.02 -0.71 16 42 H 0.10 -1.06 8.14 -2.39 -0.02 -1.08 16 43 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 44 H 0.08 -0.40 8.14 -2.39 -0.02 -0.42 16 Total: 0.00 -21.01 364.21 0.18 -20.83 By element: Atomic # 1 Polarization: -19.78 SS G_CDS: -0.89 Total: -20.67 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: 4.29 Total: 7.32 kcal Atomic # 7 Polarization: 2.15 SS G_CDS: -2.24 Total: -0.09 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: -3.05 Total: -11.43 kcal Atomic # 14 Polarization: 1.97 SS G_CDS: 2.08 Total: 4.04 kcal Total: -21.01 0.18 -20.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12865462_13287732.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.332 kcal (2) G-P(sol) polarization free energy of solvation -21.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds