Wall clock time and date at job start Tue Mar 9 2021 13:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 H 1.09001 * 109.46918 * 274.15423 * 3 2 1 5 5 C 1.53001 * 109.47212 * 34.16118 * 3 2 1 6 6 C 1.52992 * 109.47014 * 179.97438 * 5 3 2 7 7 C 1.53007 * 109.47240 * 299.99713 * 6 5 3 8 8 H 1.09002 * 109.46977 * 300.00274 * 7 6 5 9 9 N 1.46497 * 109.47183 * 180.02562 * 7 6 5 10 10 C 1.34775 * 119.99982 * 85.00156 * 9 7 6 11 11 O 1.21593 * 120.00116 * 359.97438 * 10 9 7 12 12 C 1.47525 * 119.99869 * 179.97438 * 10 9 7 13 13 C 1.39781 * 120.06821 * 180.29018 * 12 10 9 14 14 C 1.37624 * 119.92679 * 180.21050 * 13 12 10 15 15 C 1.50707 * 119.96145 * 179.79205 * 14 13 12 16 16 O 1.42903 * 109.46442 * 104.72702 * 15 14 13 17 17 Si 1.86292 * 109.47319 * 344.72868 * 15 14 13 18 18 C 1.39191 * 120.07499 * 359.52176 * 14 13 12 19 19 N 1.39048 * 119.93655 * 180.25670 * 18 14 13 20 20 C 1.46901 * 111.00425 * 119.99685 * 19 18 14 21 21 C 1.46902 * 110.99685 * 243.95364 * 19 18 14 22 22 C 1.39238 * 120.13527 * 0.22809 * 18 14 13 23 23 C 1.37591 * 120.07265 * 0.02562 * 22 18 14 24 24 C 1.53001 * 109.46883 * 60.00206 * 7 6 5 25 25 C 1.53003 * 109.46571 * 154.15774 * 3 2 1 26 26 H 4.18747 * 15.03973 * 0.02562 * 4 2 1 27 27 H 1.09005 * 109.46829 * 299.99613 * 5 3 2 28 28 H 1.09002 * 109.47258 * 59.99608 * 5 3 2 29 29 H 1.09006 * 109.47294 * 179.97438 * 6 5 3 30 30 H 1.09002 * 109.47360 * 59.99753 * 6 5 3 31 31 H 0.97001 * 119.99782 * 265.00188 * 9 7 6 32 32 H 1.07998 * 120.03523 * 0.02562 * 13 12 10 33 33 H 1.08997 * 109.47199 * 224.72590 * 15 14 13 34 34 H 0.96700 * 114.00311 * 60.00230 * 16 15 14 35 35 H 1.48500 * 110.00207 * 299.99622 * 17 15 14 36 36 H 1.48510 * 110.00345 * 61.31497 * 17 15 14 37 37 H 1.08995 * 109.46818 * 59.99842 * 20 19 18 38 38 H 1.08991 * 109.46974 * 179.97438 * 20 19 18 39 39 H 1.09000 * 109.46947 * 300.00318 * 20 19 18 40 40 H 1.09002 * 109.47301 * 59.99711 * 21 19 18 41 41 H 1.09000 * 109.46698 * 180.02562 * 21 19 18 42 42 H 1.09003 * 109.46985 * 299.99107 * 21 19 18 43 43 H 1.08002 * 119.96733 * 180.02562 * 22 18 14 44 44 H 1.07999 * 120.03882 * 180.02562 * 23 22 18 45 45 H 1.08996 * 109.47080 * 59.99827 * 24 7 6 46 46 H 1.09005 * 109.46829 * 180.02562 * 24 7 6 47 47 H 1.08997 * 109.47047 * 60.00255 * 25 3 2 48 48 H 1.09001 * 109.47213 * 299.99469 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0094 -0.0736 1.0250 5 6 3.1566 -1.1927 -0.8100 6 6 4.6865 -1.1916 -0.8105 7 6 5.1954 0.1069 -1.4397 8 1 4.8317 0.1810 -2.4645 9 7 6.6604 0.1077 -1.4407 10 6 7.3339 -0.4903 -2.4433 11 8 6.7256 -1.0309 -3.3468 12 6 8.8091 -0.4890 -2.4446 13 6 9.5091 -1.1035 -3.4869 14 6 10.8853 -1.1044 -3.4830 15 6 11.6407 -1.7708 -4.6039 16 8 12.1784 -0.7734 -5.4747 17 14 10.4850 -2.8740 -5.5619 18 6 11.5803 -0.4856 -2.4478 19 7 12.9707 -0.4836 -2.4495 20 6 13.4953 0.8884 -2.4695 21 6 13.4996 -1.2327 -1.3018 22 6 10.8859 0.1319 -1.4108 23 6 9.5100 0.1317 -1.4062 24 6 4.6849 1.3003 -0.6297 25 6 3.1553 1.2992 -0.6288 26 1 -1.0501 -0.0005 0.0000 27 1 2.7937 -2.1178 -0.3620 28 1 2.7932 -1.1184 -1.8350 29 1 5.0503 -2.0421 -1.3872 30 1 5.0503 -1.2658 0.2143 31 1 7.1456 0.5386 -0.7197 32 1 8.9705 -1.5797 -4.2928 33 1 12.4532 -2.3679 -4.1899 34 1 12.7902 -0.1620 -5.0422 35 1 9.9191 -3.9156 -4.6675 36 1 9.3901 -2.0670 -6.1582 37 1 13.1461 1.4238 -1.5866 38 1 14.5848 0.8609 -2.4700 39 1 13.1439 1.3986 -3.3664 40 1 13.1515 -2.2645 -1.3498 41 1 14.5892 -1.2148 -1.3272 42 1 13.1506 -0.7741 -0.3766 43 1 11.4279 0.6116 -0.6092 44 1 8.9720 0.6112 -0.6018 45 1 5.0486 1.2261 0.3952 46 1 5.0471 2.2255 -1.0781 47 1 2.7916 2.1494 -0.0518 48 1 2.7920 1.3735 -1.6538 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12865462_13422196.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:12:03 Heat of formation + Delta-G solvation = 20.487192 kcal Electronic energy + Delta-G solvation = -28071.295093 eV Core-core repulsion = 24287.037624 eV Total energy + Delta-G solvation = -3784.257469 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 329.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.91936 -40.92192 -39.49965 -37.72625 -37.36820 -36.06643 -33.80567 -32.82123 -31.92125 -31.56262 -29.94395 -28.57597 -26.96855 -26.30334 -24.26346 -23.83789 -23.21019 -22.84919 -21.48168 -20.99876 -19.23560 -19.07405 -18.21669 -17.88123 -17.60936 -16.82402 -16.53500 -16.22279 -16.13257 -15.97579 -15.74520 -15.49030 -15.27761 -15.09361 -15.06596 -14.71405 -14.18130 -14.12586 -14.00556 -13.87274 -13.55994 -13.32226 -13.18504 -13.07820 -12.81826 -12.74876 -12.66151 -12.39317 -12.36501 -12.23017 -12.00675 -11.70220 -11.44506 -11.30608 -11.04206 -10.99321 -10.95377 -10.33557 -10.23585 -9.89472 -9.64140 -4.94360 -0.53417 0.00885 1.29784 1.49249 1.57354 1.82560 1.85076 1.88976 1.91796 2.49098 2.67775 3.31827 3.41755 3.49457 3.55786 3.59123 3.67165 3.84312 3.96032 4.01490 4.04267 4.08813 4.11398 4.16072 4.29546 4.34197 4.36402 4.39088 4.39854 4.42121 4.57470 4.59840 4.60157 4.66873 4.69049 4.88918 4.93223 4.97629 4.98319 4.99050 5.01703 5.04636 5.06431 5.10875 5.16294 5.22720 5.27469 5.36944 5.42210 5.76100 6.14494 6.33083 6.65711 6.65987 6.99516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.211 4.211 3 C 0.022 3.978 4 H 0.109 0.891 5 C -0.104 4.104 6 C -0.122 4.122 7 C 0.143 3.857 8 H 0.063 0.937 9 N -0.702 5.702 10 C 0.555 3.445 11 O -0.584 6.584 12 C -0.149 4.149 13 C -0.083 4.083 14 C -0.113 4.113 15 C -0.062 4.062 16 O -0.544 6.544 17 Si 0.794 3.206 18 C 0.133 3.867 19 N -0.523 5.523 20 C 0.022 3.978 21 C 0.025 3.975 22 C -0.148 4.148 23 C -0.056 4.056 24 C -0.115 4.115 25 C -0.104 4.104 26 H 0.238 0.762 27 H 0.070 0.930 28 H 0.053 0.947 29 H 0.046 0.954 30 H 0.088 0.912 31 H 0.417 0.583 32 H 0.110 0.890 33 H 0.097 0.903 34 H 0.375 0.625 35 H -0.275 1.275 36 H -0.303 1.303 37 H 0.043 0.957 38 H 0.092 0.908 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.091 0.909 42 H 0.043 0.957 43 H 0.159 0.841 44 H 0.167 0.833 45 H 0.098 0.902 46 H 0.083 0.917 47 H 0.084 0.916 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.487 3.396 7.410 9.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.211 4.211 3 C 0.004 3.996 4 H 0.127 0.873 5 C -0.142 4.142 6 C -0.161 4.161 7 C 0.038 3.962 8 H 0.081 0.919 9 N -0.354 5.354 10 C 0.344 3.656 11 O -0.465 6.465 12 C -0.152 4.152 13 C -0.102 4.102 14 C -0.115 4.115 15 C -0.172 4.172 16 O -0.351 6.351 17 Si 0.700 3.300 18 C 0.038 3.962 19 N -0.245 5.245 20 C -0.124 4.124 21 C -0.121 4.121 22 C -0.168 4.168 23 C -0.075 4.075 24 C -0.153 4.153 25 C -0.142 4.142 26 H 0.254 0.746 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.107 0.893 31 H 0.256 0.744 32 H 0.127 0.873 33 H 0.115 0.885 34 H 0.224 0.776 35 H -0.202 1.202 36 H -0.232 1.232 37 H 0.062 0.938 38 H 0.111 0.889 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.110 0.890 42 H 0.062 0.938 43 H 0.177 0.823 44 H 0.184 0.816 45 H 0.116 0.884 46 H 0.102 0.898 47 H 0.102 0.898 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.092 2.197 5.861 7.479 hybrid contribution -0.492 1.270 1.831 2.282 sum 3.601 3.467 7.692 9.173 Atomic orbital electron populations 1.25695 0.96994 0.99848 1.00409 1.23587 0.95240 1.01249 1.01020 1.18440 0.83667 0.95992 1.01533 0.87316 1.21449 0.94703 0.97964 1.00072 1.21855 0.95170 0.97008 1.02046 1.21079 0.78452 0.96279 1.00361 0.91855 1.45814 1.07419 1.56698 1.25440 1.18459 0.87618 0.77846 0.81723 1.90793 1.70774 1.46760 1.38215 1.19906 0.92345 1.04684 0.98304 1.21062 0.94051 0.97545 0.97533 1.20325 0.92436 1.00734 0.97960 1.25021 1.03232 0.95348 0.93592 1.86682 1.65281 1.45676 1.37430 0.92869 0.75558 0.78035 0.83576 1.18931 0.90106 0.94674 0.92478 1.59445 1.03077 1.17098 1.44883 1.22609 1.01863 0.86020 1.01901 1.22548 1.01721 0.98050 0.89755 1.21928 0.94676 1.00661 0.99511 1.21491 0.94448 0.95242 0.96355 1.21758 0.95131 0.96762 1.01619 1.21465 0.94832 0.96590 1.01326 0.74587 0.91118 0.92778 0.93514 0.89343 0.74411 0.87268 0.88526 0.77595 1.20156 1.23156 0.93813 0.88898 0.91145 0.91658 0.88998 0.93809 0.82308 0.81596 0.88390 0.89806 0.89754 0.92390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -0.62 19.25 74.32 1.43 0.81 16 2 C -0.21 -0.84 12.56 31.13 0.39 -0.45 16 3 C 0.02 -0.01 2.57 -12.60 -0.03 -0.04 16 4 H 0.11 -0.40 8.14 -2.39 -0.02 -0.42 16 5 C -0.10 -0.15 5.16 30.59 0.16 0.00 16 6 C -0.12 -0.12 5.49 30.59 0.17 0.04 16 7 C 0.14 0.09 2.45 44.99 0.11 0.20 16 8 H 0.06 0.44 7.58 -2.39 -0.02 0.42 16 9 N -0.70 0.11 5.03 -445.70 -2.24 -2.13 16 10 C 0.56 4.82 7.73 86.69 0.67 5.49 16 11 O -0.58 -10.95 16.00 -4.01 -0.06 -11.02 16 12 C -0.15 -0.86 5.88 -20.07 -0.12 -0.98 16 13 C -0.08 -0.83 8.19 22.50 0.18 -0.65 16 14 C -0.11 -0.63 5.27 -19.78 -0.10 -0.74 16 15 C -0.06 -0.27 2.29 71.24 0.16 -0.11 16 16 O -0.54 -2.80 12.65 -148.98 -1.89 -4.69 16 17 Si 0.79 4.98 30.41 68.60 2.09 7.07 16 18 C 0.13 0.03 4.66 38.47 0.18 0.20 16 19 N -0.52 1.82 3.67 -745.12 -2.73 -0.91 16 20 C 0.02 -0.15 9.20 127.69 1.18 1.03 16 21 C 0.03 -0.15 9.38 127.69 1.20 1.05 16 22 C -0.15 0.51 8.53 22.36 0.19 0.70 16 23 C -0.06 0.15 9.53 22.50 0.21 0.37 16 24 C -0.11 0.63 5.39 30.58 0.16 0.79 16 25 C -0.10 0.27 5.16 30.58 0.16 0.42 16 26 H 0.24 -0.79 7.80 -4.41 -0.03 -0.82 16 27 H 0.07 0.12 8.14 -2.38 -0.02 0.10 16 28 H 0.05 0.25 8.14 -2.39 -0.02 0.24 16 29 H 0.05 0.32 8.14 -2.38 -0.02 0.30 16 30 H 0.09 -0.27 8.14 -2.39 -0.02 -0.28 16 31 H 0.42 -3.30 6.62 -92.71 -0.61 -3.92 16 32 H 0.11 1.69 4.51 -2.91 -0.01 1.68 16 33 H 0.10 0.11 7.77 -2.39 -0.02 0.09 16 34 H 0.37 0.15 8.06 -74.06 -0.60 -0.45 16 35 H -0.28 -2.77 7.11 99.48 0.71 -2.07 16 36 H -0.30 -4.57 6.80 99.48 0.68 -3.89 16 37 H 0.04 -0.36 7.09 -2.39 -0.02 -0.37 16 38 H 0.09 -0.83 8.12 -2.39 -0.02 -0.85 16 39 H 0.07 -0.41 7.84 -2.39 -0.02 -0.43 16 40 H 0.06 -0.27 8.14 -2.39 -0.02 -0.29 16 41 H 0.09 -0.75 8.12 -2.39 -0.02 -0.77 16 42 H 0.04 -0.33 7.32 -2.39 -0.02 -0.35 16 43 H 0.16 -1.40 6.99 -2.91 -0.02 -1.42 16 44 H 0.17 -1.79 6.39 -2.91 -0.02 -1.81 16 45 H 0.10 -0.96 8.14 -2.39 -0.02 -0.98 16 46 H 0.08 -0.53 8.14 -2.38 -0.02 -0.55 16 47 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 48 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 Total: 0.00 -21.98 385.98 1.23 -20.75 By element: Atomic # 1 Polarization: -16.96 SS G_CDS: -0.24 Total: -17.20 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: 6.30 Total: 8.13 kcal Atomic # 7 Polarization: 1.93 SS G_CDS: -4.97 Total: -3.05 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: -1.95 Total: -15.71 kcal Atomic # 14 Polarization: 4.98 SS G_CDS: 2.09 Total: 7.07 kcal Total: -21.98 1.23 -20.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12865462_13422196.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.241 kcal (2) G-P(sol) polarization free energy of solvation -21.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds