Wall clock time and date at job start Tue Mar 9 2021 13:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 H 1.09002 * 109.47120 * 153.54271 * 3 2 1 5 5 C 1.53005 * 109.47364 * 273.54189 * 3 2 1 6 6 C 1.52997 * 109.47452 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.46817 * 300.00239 * 6 5 3 8 8 H 1.08992 * 109.47063 * 299.99823 * 7 6 5 9 9 N 1.46499 * 109.46799 * 179.97438 * 7 6 5 10 10 C 1.34778 * 119.99771 * 85.00174 * 9 7 6 11 11 O 1.21279 * 120.00041 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99935 * 179.97438 * 10 9 7 13 13 O 1.42895 * 109.47270 * 179.97438 * 12 10 9 14 14 C 1.35899 * 117.00454 * 180.02562 * 13 12 10 15 15 C 1.38713 * 120.05967 * 179.72764 * 14 13 12 16 16 C 1.50696 * 120.02662 * 359.97438 * 15 14 13 17 17 O 1.42899 * 109.47353 * 284.99948 * 16 15 14 18 18 Si 1.86297 * 109.47119 * 164.99953 * 16 15 14 19 19 C 1.38170 * 119.94253 * 179.67850 * 15 14 13 20 20 C 1.38247 * 120.05416 * 0.61930 * 19 15 14 21 21 C 1.38284 * 120.11347 * 359.67548 * 20 19 15 22 22 C 1.38127 * 120.05578 * 0.02562 * 21 20 19 23 23 C 1.53000 * 109.47233 * 60.00194 * 7 6 5 24 24 C 1.52997 * 109.47060 * 299.99657 * 23 7 6 25 25 H 4.18735 * 15.03878 * 0.02562 * 4 2 1 26 26 H 1.09002 * 109.46935 * 59.99969 * 5 3 2 27 27 H 1.09001 * 109.46812 * 300.00311 * 5 3 2 28 28 H 1.08993 * 109.47194 * 179.97438 * 6 5 3 29 29 H 1.09002 * 109.46695 * 59.99734 * 6 5 3 30 30 H 0.97006 * 120.00568 * 264.99947 * 9 7 6 31 31 H 1.08995 * 109.47091 * 300.00103 * 12 10 9 32 32 H 1.08999 * 109.47030 * 59.99811 * 12 10 9 33 33 H 1.09005 * 109.47442 * 44.99952 * 16 15 14 34 34 H 0.96698 * 114.00583 * 179.97438 * 17 16 15 35 35 H 1.48505 * 109.99883 * 60.00087 * 18 16 15 36 36 H 1.48507 * 110.00137 * 181.31877 * 18 16 15 37 37 H 1.07993 * 119.96879 * 180.31576 * 19 15 14 38 38 H 1.08002 * 119.94143 * 179.70018 * 20 19 15 39 39 H 1.07992 * 119.97365 * 180.02562 * 21 20 19 40 40 H 1.08002 * 120.02748 * 180.02562 * 22 21 20 41 41 H 1.09002 * 109.47398 * 59.99826 * 23 7 6 42 42 H 1.09001 * 109.47194 * 180.02562 * 23 7 6 43 43 H 1.08996 * 109.47853 * 180.02562 * 24 23 7 44 44 H 1.09002 * 109.47153 * 300.00319 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0089 0.9209 -0.4579 5 6 3.1561 -0.0882 1.4398 6 6 4.6861 -0.0869 1.4398 7 6 5.1971 -1.2886 0.6425 8 1 4.8346 -2.2090 1.1002 9 7 6.6621 -1.2870 0.6421 10 6 7.3369 -1.8441 1.6672 11 8 6.7313 -2.3462 2.5902 12 6 8.8439 -1.8429 1.6665 13 8 9.3213 -2.4856 2.8502 14 6 10.6687 -2.5691 3.0063 15 6 11.2011 -3.1752 4.1347 16 6 10.2858 -3.7414 5.1895 17 8 9.7197 -2.6737 5.9520 18 14 11.2563 -4.8630 6.3168 19 6 12.5714 -3.2647 4.2879 20 6 13.4116 -2.7395 3.3238 21 6 12.8833 -2.1294 2.2009 22 6 11.5141 -2.0428 2.0401 23 6 4.6871 -1.1997 -0.7972 24 6 3.1571 -1.2010 -0.7973 25 1 -1.0499 -0.0006 0.0008 26 1 2.7932 -1.0084 1.8976 27 1 2.7923 0.7681 2.0076 28 1 5.0494 -0.1498 2.4655 29 1 5.0486 0.8335 0.9821 30 1 7.1465 -0.8851 -0.0960 31 1 9.2072 -2.3791 0.7898 32 1 9.2064 -0.8153 1.6400 33 1 9.4876 -4.3092 4.7112 34 1 9.1182 -2.9651 6.6508 35 1 12.3476 -4.1007 6.9751 36 1 10.3585 -5.4528 7.3423 37 1 12.9863 -3.7410 5.1638 38 1 14.4824 -2.8062 3.4477 39 1 13.5417 -1.7202 1.4490 40 1 11.1020 -1.5665 1.1628 41 1 5.0497 -0.2793 -1.2549 42 1 5.0508 -2.0561 -1.3651 43 1 2.7937 -1.1381 -1.8229 44 1 2.7946 -2.1214 -0.3395 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12865462_2989392.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:12:28 Heat of formation + Delta-G solvation = -24.833246 kcal Electronic energy + Delta-G solvation = -25720.340547 eV Core-core repulsion = 21991.936793 eV Total energy + Delta-G solvation = -3728.403754 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 316.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.65167 -40.92111 -39.49572 -38.39822 -37.63060 -35.92442 -33.64971 -32.87720 -31.87509 -31.39952 -30.54116 -28.72727 -26.65762 -24.41003 -23.80549 -23.24603 -22.46597 -21.59318 -21.10561 -19.32601 -19.06846 -18.60973 -18.35906 -17.44560 -17.36871 -16.99474 -16.78467 -16.09188 -15.76996 -15.60458 -15.46156 -15.33349 -15.20232 -14.97703 -14.76926 -14.11389 -13.98081 -13.92846 -13.81415 -13.55240 -13.27845 -13.08255 -12.79683 -12.64169 -12.33875 -12.19174 -12.11601 -11.95953 -11.82497 -11.77758 -11.65580 -11.05610 -10.95663 -10.90584 -10.44987 -10.17574 -9.96148 -9.20743 -4.97608 0.23582 0.42834 1.26986 1.43211 1.48854 1.55990 1.84271 1.87732 1.88106 2.58867 2.67113 3.35247 3.44085 3.53933 3.63884 3.71017 3.78061 3.93920 3.97133 4.04302 4.07691 4.13247 4.16868 4.20698 4.25673 4.34660 4.35424 4.39241 4.43872 4.52799 4.65108 4.67439 4.72104 4.97840 4.98257 5.02577 5.08427 5.10513 5.19672 5.26757 5.29024 5.32829 5.39650 5.44147 5.53415 5.76568 6.27846 6.46885 6.55222 6.67609 7.12990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.210 4.210 3 C 0.021 3.979 4 H 0.108 0.892 5 C -0.104 4.104 6 C -0.123 4.123 7 C 0.146 3.854 8 H 0.063 0.937 9 N -0.705 5.705 10 C 0.513 3.487 11 O -0.571 6.571 12 C 0.036 3.964 13 O -0.313 6.313 14 C 0.128 3.872 15 C -0.130 4.130 16 C -0.086 4.086 17 O -0.557 6.557 18 Si 0.780 3.220 19 C -0.090 4.090 20 C -0.155 4.155 21 C -0.074 4.074 22 C -0.211 4.211 23 C -0.114 4.114 24 C -0.105 4.105 25 H 0.237 0.763 26 H 0.053 0.947 27 H 0.068 0.932 28 H 0.046 0.954 29 H 0.087 0.913 30 H 0.422 0.578 31 H 0.127 0.873 32 H 0.118 0.882 33 H 0.065 0.935 34 H 0.387 0.613 35 H -0.283 1.283 36 H -0.291 1.291 37 H 0.141 0.859 38 H 0.151 0.849 39 H 0.157 0.843 40 H 0.158 0.842 41 H 0.097 0.903 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.659 0.920 -8.173 9.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.210 4.210 3 C 0.003 3.997 4 H 0.126 0.874 5 C -0.143 4.143 6 C -0.161 4.161 7 C 0.042 3.958 8 H 0.081 0.919 9 N -0.359 5.359 10 C 0.299 3.701 11 O -0.449 6.449 12 C -0.042 4.042 13 O -0.226 6.226 14 C 0.083 3.917 15 C -0.131 4.131 16 C -0.193 4.193 17 O -0.366 6.366 18 Si 0.684 3.316 19 C -0.107 4.107 20 C -0.173 4.173 21 C -0.092 4.092 22 C -0.229 4.229 23 C -0.152 4.152 24 C -0.143 4.143 25 H 0.254 0.746 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.064 0.936 29 H 0.106 0.894 30 H 0.260 0.740 31 H 0.144 0.856 32 H 0.136 0.864 33 H 0.083 0.917 34 H 0.237 0.763 35 H -0.210 1.210 36 H -0.218 1.218 37 H 0.159 0.841 38 H 0.169 0.831 39 H 0.175 0.825 40 H 0.176 0.824 41 H 0.115 0.885 42 H 0.104 0.896 43 H 0.101 0.899 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.692 0.685 -7.005 7.948 hybrid contribution -1.414 0.855 0.589 1.754 sum 2.278 1.539 -6.416 6.980 Atomic orbital electron populations 1.25689 0.97005 1.00408 1.00006 1.23619 0.95286 1.00989 1.01146 1.18452 0.83589 1.00973 0.96680 0.87400 1.21452 0.94956 1.02278 0.95572 1.21858 0.94978 0.99194 1.00119 1.21000 0.78688 0.98495 0.97637 0.91913 1.45736 1.07149 1.59542 1.23452 1.20530 0.89750 0.77591 0.82243 1.90759 1.70981 1.46338 1.36801 1.22727 0.91147 1.01309 0.89023 1.86155 1.19594 1.74810 1.42023 1.19055 0.81969 0.95864 0.94851 1.18861 0.93994 1.05457 0.94815 1.25043 1.00927 0.95286 0.98070 1.86548 1.65351 1.34097 1.50576 0.94111 0.77794 0.80972 0.78705 1.21147 0.91158 0.98493 0.99927 1.21399 1.01173 1.00219 0.94507 1.21414 0.94418 0.95765 0.97590 1.21609 0.94732 1.05934 1.00666 1.21758 0.94861 1.04876 0.93711 1.21478 0.95098 0.96897 1.00812 0.74642 0.92793 0.91353 0.93550 0.89401 0.74011 0.85563 0.86390 0.91670 0.76326 1.20958 1.21827 0.84139 0.83084 0.82515 0.82418 0.88461 0.89609 0.89886 0.92375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -0.58 19.25 74.32 1.43 0.85 16 2 C -0.21 -0.77 12.56 31.13 0.39 -0.37 16 3 C 0.02 -0.02 2.56 -12.60 -0.03 -0.05 16 4 H 0.11 -0.44 8.14 -2.39 -0.02 -0.46 16 5 C -0.10 -0.09 5.16 30.60 0.16 0.07 16 6 C -0.12 0.02 5.49 30.59 0.17 0.19 16 7 C 0.15 -0.22 2.45 44.99 0.11 -0.11 16 8 H 0.06 0.31 7.58 -2.39 -0.02 0.29 16 9 N -0.70 2.75 5.08 -442.54 -2.25 0.50 16 10 C 0.51 2.06 7.87 87.66 0.69 2.75 16 11 O -0.57 -9.09 16.16 16.01 0.26 -8.83 16 12 C 0.04 -0.04 5.22 71.24 0.37 0.33 16 13 O -0.31 -2.75 9.00 -73.38 -0.66 -3.41 16 14 C 0.13 0.83 6.66 22.51 0.15 0.98 16 15 C -0.13 -0.97 5.31 -19.77 -0.10 -1.08 16 16 C -0.09 -0.66 2.37 71.23 0.17 -0.50 16 17 O -0.56 -6.32 12.86 -148.98 -1.92 -8.23 16 18 Si 0.78 1.87 30.19 68.60 2.07 3.94 16 19 C -0.09 -0.30 8.66 22.26 0.19 -0.10 16 20 C -0.16 0.07 10.04 22.28 0.22 0.30 16 21 C -0.07 0.16 10.04 22.25 0.22 0.38 16 22 C -0.21 0.08 9.04 22.37 0.20 0.28 16 23 C -0.11 0.80 5.39 30.59 0.16 0.97 16 24 C -0.10 0.36 5.16 30.59 0.16 0.52 16 25 H 0.24 -0.82 7.80 -4.42 -0.03 -0.86 16 26 H 0.05 0.22 8.14 -2.39 -0.02 0.20 16 27 H 0.07 0.09 8.14 -2.39 -0.02 0.08 16 28 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.09 -0.35 8.14 -2.39 -0.02 -0.37 16 30 H 0.42 -5.10 8.60 -92.70 -0.80 -5.90 16 31 H 0.13 -1.04 7.66 -2.39 -0.02 -1.06 16 32 H 0.12 -0.78 7.66 -2.39 -0.02 -0.80 16 33 H 0.07 0.56 7.83 -2.38 -0.02 0.55 16 34 H 0.39 1.57 8.74 -74.06 -0.65 0.93 16 35 H -0.28 -1.88 6.76 99.48 0.67 -1.21 16 36 H -0.29 -2.00 7.11 99.48 0.71 -1.29 16 37 H 0.14 0.10 4.90 -2.91 -0.01 0.09 16 38 H 0.15 -0.82 8.06 -2.91 -0.02 -0.85 16 39 H 0.16 -1.27 8.06 -2.91 -0.02 -1.30 16 40 H 0.16 -1.15 6.30 -2.91 -0.02 -1.17 16 41 H 0.10 -1.08 8.14 -2.39 -0.02 -1.10 16 42 H 0.09 -0.70 8.14 -2.39 -0.02 -0.72 16 43 H 0.08 -0.39 8.14 -2.39 -0.02 -0.40 16 44 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 Total: 0.00 -27.55 366.85 1.75 -25.81 By element: Atomic # 1 Polarization: -14.75 SS G_CDS: -0.43 Total: -15.18 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: 4.67 Total: 5.40 kcal Atomic # 7 Polarization: 2.75 SS G_CDS: -2.25 Total: 0.50 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -2.32 Total: -20.47 kcal Atomic # 14 Polarization: 1.87 SS G_CDS: 2.07 Total: 3.94 kcal Total: -27.55 1.75 -25.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12865462_2989392.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.973 kcal (2) G-P(sol) polarization free energy of solvation -27.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds