Wall clock time and date at job start Tue Mar 9 2021 13:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 H 1.09005 * 109.46929 * 202.85513 * 3 2 1 5 5 C 1.52998 * 109.47549 * 322.85146 * 3 2 1 6 6 C 1.52996 * 109.47287 * 180.02562 * 5 3 2 7 7 C 1.53006 * 109.47034 * 300.00407 * 6 5 3 8 8 H 1.09005 * 109.47060 * 300.00040 * 7 6 5 9 9 N 1.46499 * 109.47002 * 180.02562 * 7 6 5 10 10 C 1.34777 * 119.99970 * 84.99728 * 9 7 6 11 11 O 1.21282 * 120.00088 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00151 * 179.97438 * 10 9 7 13 13 C 1.52998 * 109.47216 * 180.02562 * 12 10 9 14 14 O 1.42904 * 109.47021 * 180.02562 * 13 12 10 15 15 C 1.35895 * 116.99884 * 180.02562 * 14 13 12 16 16 C 1.38736 * 120.05789 * 180.02562 * 15 14 13 17 17 C 1.38134 * 119.94971 * 180.02562 * 16 15 14 18 18 C 1.38267 * 120.05527 * 359.97264 * 17 16 15 19 19 C 1.50702 * 119.94890 * 180.02562 * 18 17 16 20 20 O 1.42903 * 109.47007 * 300.00359 * 19 18 17 21 21 Si 1.86300 * 109.47301 * 179.97438 * 19 18 17 22 22 C 1.38273 * 120.10994 * 0.29777 * 18 17 16 23 23 C 1.38148 * 120.05257 * 359.44983 * 22 18 17 24 24 C 1.52995 * 109.47094 * 59.99800 * 7 6 5 25 25 C 1.52996 * 109.47343 * 300.00010 * 24 7 6 26 26 H 4.18742 * 15.03849 * 359.97438 * 4 2 1 27 27 H 1.08997 * 109.47365 * 300.00474 * 5 3 2 28 28 H 1.09005 * 109.46705 * 60.00231 * 5 3 2 29 29 H 1.09004 * 109.47221 * 180.02562 * 6 5 3 30 30 H 1.08992 * 109.47105 * 60.00120 * 6 5 3 31 31 H 0.97003 * 119.99998 * 265.00138 * 9 7 6 32 32 H 1.09002 * 109.46787 * 60.00462 * 12 10 9 33 33 H 1.09003 * 109.47247 * 300.00517 * 12 10 9 34 34 H 1.09002 * 109.47082 * 60.00377 * 13 12 10 35 35 H 1.08997 * 109.47064 * 299.99840 * 13 12 10 36 36 H 1.08005 * 120.02336 * 359.97438 * 16 15 14 37 37 H 1.07997 * 119.97664 * 179.97438 * 17 16 15 38 38 H 1.09004 * 109.46923 * 59.99928 * 19 18 17 39 39 H 0.96700 * 113.99509 * 299.99566 * 20 19 18 40 40 H 1.48498 * 109.99634 * 58.68378 * 21 19 18 41 41 H 1.48502 * 109.99691 * 180.02562 * 21 19 18 42 42 H 1.07998 * 119.96907 * 179.70795 * 22 18 17 43 43 H 1.07995 * 120.02276 * 180.24633 * 23 22 18 44 44 H 1.09000 * 109.47290 * 60.00511 * 24 7 6 45 45 H 1.09006 * 109.47086 * 180.02562 * 24 7 6 46 46 H 1.08999 * 109.46887 * 180.02562 * 25 24 7 47 47 H 1.08997 * 109.46999 * 299.99784 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0089 0.9479 0.3992 5 6 3.1566 -1.1488 0.8711 6 6 4.6866 -1.1477 0.8715 7 6 5.1971 -1.3265 -0.5597 8 1 4.8346 -2.2738 -0.9591 9 7 6.6621 -1.3261 -0.5592 10 6 7.3363 -2.4670 -0.3136 11 8 6.7301 -3.4942 -0.0936 12 6 8.8433 -2.4667 -0.3136 13 6 9.3536 -3.8769 -0.0109 14 8 10.7827 -3.8764 -0.0103 15 6 11.3999 -5.0603 0.2434 16 6 12.7853 -5.1321 0.2600 17 6 13.4104 -6.3367 0.5176 18 6 12.6565 -7.4702 0.7594 19 6 13.3409 -8.7831 1.0408 20 8 14.1584 -9.1427 -0.0748 21 14 12.0581 -10.1043 1.3231 22 6 11.2756 -7.4026 0.7380 23 6 10.6457 -6.1991 0.4860 24 6 4.6865 -0.1770 -1.4307 25 6 3.1566 -0.1781 -1.4311 26 1 -1.0500 -0.0008 -0.0009 27 1 2.7932 -1.0212 1.8907 28 1 2.7937 -2.0960 0.4719 29 1 5.0503 -1.9670 1.4918 30 1 5.0490 -0.2006 1.2709 31 1 7.1469 -0.5046 -0.7354 32 1 9.2065 -1.7771 0.4484 33 1 9.2066 -2.1514 -1.2918 34 1 8.9905 -4.5662 -0.7732 35 1 8.9904 -4.1925 0.9671 36 1 13.3746 -4.2470 0.0708 37 1 14.4888 -6.3932 0.5302 38 1 13.9630 -8.6851 1.9305 39 1 13.6700 -9.2473 -0.9027 40 1 11.1830 -10.2256 0.1295 41 1 12.7204 -11.4038 1.6022 42 1 10.6890 -8.2904 0.9225 43 1 9.5672 -6.1460 0.4732 44 1 5.0491 0.7702 -1.0313 45 1 5.0499 -0.3047 -2.4504 46 1 2.7929 0.6406 -2.0520 47 1 2.7941 -1.1253 -1.8306 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12865462_4549602.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:12:33 Heat of formation + Delta-G solvation = -36.807432 kcal Electronic energy + Delta-G solvation = -26657.531197 eV Core-core repulsion = 22773.070585 eV Total energy + Delta-G solvation = -3884.460613 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 330.166 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.45449 -41.03647 -39.55756 -39.08932 -37.30396 -35.88536 -33.79085 -33.12540 -32.04371 -31.84736 -31.47498 -29.94582 -26.64263 -25.67955 -24.10565 -23.77032 -23.19578 -22.18926 -21.47169 -20.97018 -19.50881 -19.05158 -18.44141 -17.74438 -17.51944 -17.44864 -16.95834 -16.38295 -16.20782 -16.08642 -15.90709 -15.62480 -15.41100 -15.21648 -14.79946 -14.72781 -14.46349 -14.31145 -14.20672 -13.94579 -13.77994 -13.48738 -13.24954 -12.89825 -12.82880 -12.74229 -12.31249 -12.28076 -12.16140 -12.06337 -11.93025 -11.78116 -11.62686 -11.61330 -11.06097 -10.94508 -10.88903 -10.61058 -10.09329 -10.04080 -9.22081 -4.93809 0.27625 0.30410 1.31263 1.55126 1.58151 1.71638 1.85595 1.88917 1.93416 2.49484 2.64967 3.38806 3.42675 3.56884 3.64903 3.71846 3.73970 3.82629 3.89189 3.91708 4.02203 4.08435 4.17094 4.23067 4.26060 4.34246 4.38303 4.41866 4.46215 4.46929 4.57050 4.66152 4.70101 4.70692 4.74438 4.79853 4.97440 5.02322 5.05594 5.10886 5.12661 5.17926 5.22044 5.28542 5.29417 5.37124 5.48713 5.50442 5.71937 6.32062 6.48473 6.50514 6.68781 7.19852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.210 4.210 3 C 0.020 3.980 4 H 0.106 0.894 5 C -0.104 4.104 6 C -0.122 4.122 7 C 0.144 3.856 8 H 0.065 0.935 9 N -0.711 5.711 10 C 0.519 3.481 11 O -0.583 6.583 12 C -0.132 4.132 13 C 0.072 3.928 14 O -0.321 6.321 15 C 0.123 3.877 16 C -0.158 4.158 17 C -0.059 4.059 18 C -0.159 4.159 19 C -0.074 4.074 20 O -0.548 6.548 21 Si 0.758 3.242 22 C -0.080 4.080 23 C -0.210 4.210 24 C -0.116 4.116 25 C -0.105 4.105 26 H 0.237 0.763 27 H 0.068 0.932 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.085 0.915 31 H 0.419 0.581 32 H 0.128 0.872 33 H 0.126 0.874 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.127 0.873 39 H 0.385 0.615 40 H -0.287 1.287 41 H -0.302 1.302 42 H 0.143 0.857 43 H 0.139 0.861 44 H 0.093 0.907 45 H 0.082 0.918 46 H 0.079 0.921 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.047 6.328 0.144 6.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.210 4.210 3 C 0.002 3.998 4 H 0.124 0.876 5 C -0.142 4.142 6 C -0.160 4.160 7 C 0.039 3.961 8 H 0.083 0.917 9 N -0.363 5.363 10 C 0.306 3.694 11 O -0.464 6.464 12 C -0.172 4.172 13 C -0.003 4.003 14 O -0.235 6.235 15 C 0.078 3.922 16 C -0.177 4.177 17 C -0.077 4.077 18 C -0.160 4.160 19 C -0.183 4.183 20 O -0.356 6.356 21 Si 0.664 3.336 22 C -0.097 4.097 23 C -0.229 4.229 24 C -0.154 4.154 25 C -0.143 4.143 26 H 0.253 0.747 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.103 0.897 31 H 0.257 0.743 32 H 0.146 0.854 33 H 0.144 0.856 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.160 0.840 37 H 0.158 0.842 38 H 0.144 0.856 39 H 0.234 0.766 40 H -0.214 1.214 41 H -0.230 1.230 42 H 0.160 0.840 43 H 0.157 0.843 44 H 0.112 0.888 45 H 0.101 0.899 46 H 0.098 0.902 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.253 5.086 0.428 5.256 hybrid contribution -0.085 0.030 -1.171 1.175 sum -1.339 5.116 -0.743 5.340 Atomic orbital electron populations 1.25688 0.97008 1.00417 1.00073 1.23634 0.95301 1.00967 1.01106 1.18455 0.83549 1.00510 0.97242 0.87594 1.21453 0.95142 0.97706 0.99943 1.21851 0.94785 1.02803 0.96593 1.20981 0.79244 0.99929 0.95904 0.91709 1.45917 1.07076 1.11771 1.71535 1.20651 0.90193 0.83256 0.75264 1.90742 1.71429 1.33709 1.50472 1.21441 0.90475 0.97562 1.07715 1.22460 0.77215 0.98250 1.02381 1.85957 1.21805 1.29813 1.85883 1.19189 0.92622 0.84784 0.95609 1.20674 0.91337 0.99716 1.05944 1.20974 1.00663 0.90655 0.95390 1.20259 0.93686 0.96531 1.05498 1.25091 1.02442 0.98668 0.92106 1.86561 1.37754 1.90888 1.20435 0.94154 0.77560 0.75155 0.86719 1.20993 0.93869 0.97676 0.97207 1.21409 1.00941 0.92844 1.07672 1.21754 0.94848 0.98326 1.00464 1.21470 0.95148 1.02845 0.94816 0.74674 0.91300 0.92647 0.92898 0.89689 0.74300 0.85413 0.85583 0.91845 0.91502 0.83984 0.84163 0.85571 0.76567 1.21378 1.22990 0.83988 0.84323 0.88817 0.89941 0.90217 0.92306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -0.46 19.25 74.32 1.43 0.97 16 2 C -0.21 -0.63 12.56 31.13 0.39 -0.24 16 3 C 0.02 -0.04 2.56 -12.60 -0.03 -0.07 16 4 H 0.11 -0.47 8.14 -2.38 -0.02 -0.49 16 5 C -0.10 0.08 5.16 30.59 0.16 0.23 16 6 C -0.12 0.27 5.49 30.59 0.17 0.44 16 7 C 0.14 -0.45 2.45 44.99 0.11 -0.34 16 8 H 0.06 0.18 7.58 -2.38 -0.02 0.16 16 9 N -0.71 3.99 5.08 -442.52 -2.25 1.74 16 10 C 0.52 -0.20 7.79 87.66 0.68 0.48 16 11 O -0.58 -5.24 15.64 -3.04 -0.05 -5.28 16 12 C -0.13 0.69 6.07 29.85 0.18 0.87 16 13 C 0.07 0.02 4.03 71.98 0.29 0.31 16 14 O -0.32 -0.92 10.14 -92.37 -0.94 -1.85 16 15 C 0.12 0.49 6.69 22.51 0.15 0.64 16 16 C -0.16 -0.44 9.99 22.36 0.22 -0.21 16 17 C -0.06 -0.12 9.60 22.25 0.21 0.09 16 18 C -0.16 -0.25 5.39 -19.85 -0.11 -0.36 16 19 C -0.07 -0.03 2.82 71.24 0.20 0.17 16 20 O -0.55 -1.86 12.77 -148.98 -1.90 -3.76 16 21 Si 0.76 -0.28 29.79 68.60 2.04 1.76 16 22 C -0.08 -0.11 8.66 22.26 0.19 0.08 16 23 C -0.21 -0.60 9.04 22.37 0.20 -0.40 16 24 C -0.12 0.85 5.39 30.59 0.16 1.01 16 25 C -0.10 0.41 5.16 30.59 0.16 0.56 16 26 H 0.24 -0.95 7.80 -4.42 -0.03 -0.98 16 27 H 0.07 -0.02 8.14 -2.39 -0.02 -0.04 16 28 H 0.05 0.12 8.14 -2.38 -0.02 0.10 16 29 H 0.05 0.12 8.14 -2.39 -0.02 0.10 16 30 H 0.08 -0.46 8.14 -2.39 -0.02 -0.48 16 31 H 0.42 -5.14 8.60 -92.71 -0.80 -5.93 16 32 H 0.13 -1.16 8.14 -2.39 -0.02 -1.18 16 33 H 0.13 -1.11 8.14 -2.39 -0.02 -1.13 16 34 H 0.06 0.12 7.62 -2.39 -0.02 0.10 16 35 H 0.07 0.10 7.62 -2.39 -0.02 0.08 16 36 H 0.14 0.02 8.06 -2.91 -0.02 0.00 16 37 H 0.14 0.01 8.06 -2.91 -0.02 -0.02 16 38 H 0.13 -0.18 7.96 -2.38 -0.02 -0.20 16 39 H 0.39 -0.70 8.70 -74.06 -0.64 -1.34 16 40 H -0.29 -1.12 7.10 99.48 0.71 -0.41 16 41 H -0.30 -2.15 7.11 99.48 0.71 -1.44 16 42 H 0.14 -0.32 4.87 -2.91 -0.01 -0.33 16 43 H 0.14 0.17 6.30 -2.91 -0.02 0.16 16 44 H 0.09 -1.01 8.14 -2.39 -0.02 -1.03 16 45 H 0.08 -0.66 8.14 -2.38 -0.02 -0.68 16 46 H 0.08 -0.37 8.14 -2.39 -0.02 -0.39 16 47 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 Total: 0.00 -19.85 388.47 1.26 -18.59 By element: Atomic # 1 Polarization: -15.04 SS G_CDS: -0.43 Total: -15.47 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: 4.78 Total: 4.27 kcal Atomic # 7 Polarization: 3.99 SS G_CDS: -2.25 Total: 1.74 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: -2.89 Total: -10.90 kcal Atomic # 14 Polarization: -0.28 SS G_CDS: 2.04 Total: 1.76 kcal Total: -19.85 1.26 -18.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12865462_4549602.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.218 kcal (2) G-P(sol) polarization free energy of solvation -19.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds