Wall clock time and date at job start Tue Mar 9 2021 13:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 H 1.08997 * 109.47132 * 271.12157 * 3 2 1 5 5 C 1.52995 * 109.47446 * 31.12467 * 3 2 1 6 6 C 1.53000 * 109.47622 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47221 * 300.00676 * 6 5 3 8 8 H 1.09009 * 109.46764 * 299.99646 * 7 6 5 9 9 N 1.46501 * 109.47444 * 179.97438 * 7 6 5 10 10 C 1.34776 * 120.00461 * 154.99418 * 9 7 6 11 11 O 1.21693 * 119.99916 * 355.38868 * 10 9 7 12 12 C 1.46666 * 120.00074 * 175.38247 * 10 9 7 13 13 C 1.37890 * 126.22576 * 4.85921 * 12 10 9 14 14 C 1.39876 * 107.09195 * 179.97438 * 13 12 10 15 15 Br 1.89095 * 126.07320 * 180.02562 * 14 13 12 16 16 C 1.35507 * 107.85405 * 0.02562 * 14 13 12 17 17 C 1.50700 * 125.57206 * 179.97438 * 16 14 13 18 18 O 1.42906 * 109.46981 * 295.49116 * 17 16 14 19 19 Si 1.86298 * 109.47318 * 55.49202 * 17 16 14 20 20 N 1.35602 * 108.85446 * 359.72988 * 16 14 13 21 21 C 1.46504 * 125.67482 * 180.28859 * 20 16 14 22 22 C 1.52995 * 109.47374 * 59.99173 * 7 6 5 23 23 C 1.52995 * 109.47511 * 300.00080 * 22 7 6 24 24 H 4.18741 * 15.04023 * 0.02562 * 4 2 1 25 25 H 1.09001 * 109.47334 * 299.99918 * 5 3 2 26 26 H 1.09009 * 109.46788 * 59.99723 * 5 3 2 27 27 H 1.09007 * 109.46689 * 59.99735 * 6 5 3 28 28 H 1.08996 * 109.47249 * 180.02562 * 6 5 3 29 29 H 0.97005 * 119.99249 * 334.99713 * 9 7 6 30 30 H 1.07999 * 126.45337 * 359.97276 * 13 12 10 31 31 H 1.09006 * 109.47229 * 175.49598 * 17 16 14 32 32 H 0.96707 * 113.99760 * 60.00088 * 18 17 16 33 33 H 1.48495 * 109.99702 * 63.70266 * 19 17 16 34 34 H 1.48499 * 110.00091 * 185.02265 * 19 17 16 35 35 H 1.09002 * 109.47006 * 263.80320 * 21 20 16 36 36 H 1.08997 * 109.46893 * 23.79635 * 21 20 16 37 37 H 1.08995 * 109.46724 * 143.80137 * 21 20 16 38 38 H 1.09007 * 109.47305 * 60.00469 * 22 7 6 39 39 H 1.09010 * 109.47198 * 180.02562 * 22 7 6 40 40 H 1.08999 * 109.47479 * 299.99930 * 23 22 7 41 41 H 1.09001 * 109.47367 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0094 -0.0193 1.0274 5 6 3.1566 -1.2339 -0.7456 6 6 4.6866 -1.2329 -0.7462 7 6 5.1956 0.0305 -1.4430 8 1 4.8318 0.0503 -2.4704 9 7 6.6606 0.0318 -1.4430 10 6 7.3339 0.7202 -2.3860 11 8 6.7280 1.2713 -3.2860 12 6 8.7970 0.8053 -2.3273 13 6 9.6154 0.1578 -1.4260 14 6 10.9313 0.5203 -1.7316 15 35 12.4858 -0.0643 -0.8275 16 6 10.8944 1.3648 -2.7907 17 6 12.0927 1.9993 -3.4483 18 8 12.7353 2.8772 -2.5218 19 14 13.2875 0.6708 -3.9760 20 7 9.6032 1.5414 -3.1655 21 6 9.1427 2.3788 -4.2759 22 6 4.6850 1.2651 -0.6974 23 6 3.1550 1.2641 -0.6969 24 1 -1.0500 -0.0005 0.0000 25 1 2.7938 -2.1340 -0.2493 26 1 2.7932 -1.2139 -1.7731 27 1 5.0503 -1.2526 0.2813 28 1 5.0503 -2.1122 -1.2777 29 1 7.1460 -0.4629 -0.7643 30 1 9.2998 -0.5044 -0.6334 31 1 11.7703 2.5659 -4.3219 32 1 13.0489 2.4399 -1.7183 33 1 12.6608 -0.1957 -5.0063 34 1 14.5262 1.2869 -4.5156 35 1 8.8490 3.3572 -3.8956 36 1 9.9488 2.4976 -4.9999 37 1 8.2879 1.9048 -4.7582 38 1 5.0486 1.2453 0.3300 39 1 5.0472 2.1652 -1.1941 40 1 2.7913 1.2840 -1.7243 41 1 2.7913 2.1434 -0.1653 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12865462_5000100.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:13:15 Heat of formation + Delta-G solvation = 31.757568 kcal Electronic energy + Delta-G solvation = -24776.170489 eV Core-core repulsion = 21091.885116 eV Total energy + Delta-G solvation = -3684.285373 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 367.057 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.88902 -40.90906 -39.28438 -37.92707 -36.03274 -34.56649 -33.61391 -32.27970 -31.84699 -31.11467 -29.98174 -27.44958 -26.97491 -24.31189 -23.76960 -23.01666 -21.42000 -21.27981 -20.45099 -19.09469 -19.02020 -18.24945 -17.42777 -17.28334 -16.71103 -16.16791 -15.88838 -15.79179 -15.58088 -15.23794 -15.10794 -14.90243 -14.60295 -14.37198 -14.13449 -14.08166 -13.90023 -13.83522 -13.26016 -13.24828 -12.76748 -12.63175 -12.38599 -12.31321 -12.15650 -11.99854 -11.93922 -11.62750 -11.54261 -11.15742 -10.96205 -10.90953 -10.88810 -10.19895 -9.84073 -9.33655 -5.01359 0.13137 0.48870 0.90504 1.15789 1.46719 1.55837 1.84205 1.86601 1.90008 2.14723 2.24433 3.15383 3.36754 3.39685 3.54374 3.62740 3.67614 3.74483 3.84106 4.07555 4.10943 4.15853 4.22830 4.23550 4.37520 4.38517 4.41770 4.47214 4.54053 4.63232 4.71696 4.74450 5.01144 5.05445 5.11540 5.13518 5.21660 5.26481 5.30972 5.35477 5.47032 5.57479 5.75564 6.36203 6.41917 6.69863 7.06054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.209 4.209 3 C 0.020 3.980 4 H 0.107 0.893 5 C -0.104 4.104 6 C -0.116 4.116 7 C 0.148 3.852 8 H 0.069 0.931 9 N -0.697 5.697 10 C 0.590 3.410 11 O -0.579 6.579 12 C -0.056 4.056 13 C -0.092 4.092 14 C -0.184 4.184 15 Br 0.033 6.967 16 C 0.048 3.952 17 C -0.053 4.053 18 O -0.540 6.540 19 Si 0.718 3.282 20 N -0.398 5.398 21 C 0.061 3.939 22 C -0.122 4.122 23 C -0.103 4.103 24 H 0.236 0.764 25 H 0.081 0.919 26 H 0.059 0.941 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.419 0.581 30 H 0.189 0.811 31 H 0.121 0.879 32 H 0.388 0.612 33 H -0.278 1.278 34 H -0.264 1.264 35 H 0.085 0.915 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.050 0.950 40 H 0.056 0.944 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.491 -3.741 4.622 5.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.209 4.209 3 C 0.002 3.998 4 H 0.125 0.875 5 C -0.142 4.142 6 C -0.154 4.154 7 C 0.044 3.956 8 H 0.087 0.913 9 N -0.348 5.348 10 C 0.378 3.622 11 O -0.460 6.460 12 C -0.170 4.170 13 C -0.118 4.118 14 C -0.270 4.270 15 Br 0.117 6.883 16 C -0.073 4.073 17 C -0.163 4.163 18 O -0.347 6.347 19 Si 0.619 3.381 20 N -0.072 5.072 21 C -0.080 4.080 22 C -0.160 4.160 23 C -0.141 4.141 24 H 0.253 0.747 25 H 0.100 0.900 26 H 0.078 0.922 27 H 0.114 0.886 28 H 0.102 0.898 29 H 0.257 0.743 30 H 0.206 0.794 31 H 0.139 0.861 32 H 0.239 0.761 33 H -0.203 1.203 34 H -0.189 1.189 35 H 0.104 0.896 36 H 0.121 0.879 37 H 0.115 0.885 38 H 0.104 0.896 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.784 -3.246 2.921 4.436 hybrid contribution -1.054 0.721 -0.404 1.339 sum -0.270 -2.525 2.516 3.575 Atomic orbital electron populations 1.25683 0.97006 1.00004 1.00560 1.23625 0.95282 1.01111 1.00890 1.18462 0.83541 0.96084 1.01682 0.87470 1.21468 0.94949 0.97133 1.00631 1.21768 0.94955 0.96127 1.02570 1.21042 0.78002 0.96167 1.00392 0.91273 1.45579 1.07322 1.50990 1.30950 1.17007 0.84890 0.78533 0.81768 1.90809 1.70422 1.48622 1.36164 1.20194 0.91539 1.06126 0.99104 1.21552 0.89458 1.01059 0.99777 1.20850 0.94306 1.08942 1.02877 1.96617 1.30048 1.88924 1.72680 1.21076 0.85803 1.01591 0.98878 1.24839 0.94395 1.02017 0.95070 1.86517 1.77069 1.37116 1.34031 0.93156 0.77720 0.79182 0.88064 1.43963 1.04686 1.34205 1.24307 1.22431 1.02637 0.95230 0.87670 1.21858 0.94947 0.97511 1.01701 1.21447 0.94884 0.97146 1.00671 0.74718 0.90029 0.92242 0.88566 0.89762 0.74337 0.79428 0.86116 0.76132 1.20347 1.18900 0.89644 0.87917 0.88501 0.89556 0.93160 0.92560 0.91283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -0.45 19.25 74.32 1.43 0.98 16 2 C -0.21 -0.60 12.56 31.12 0.39 -0.21 16 3 C 0.02 -0.04 2.57 -12.60 -0.03 -0.07 16 4 H 0.11 -0.50 8.14 -2.39 -0.02 -0.52 16 5 C -0.10 0.42 5.16 30.59 0.16 0.58 16 6 C -0.12 0.84 5.39 30.59 0.16 1.01 16 7 C 0.15 -0.37 2.49 44.99 0.11 -0.25 16 8 H 0.07 0.21 7.52 -2.38 -0.02 0.19 16 9 N -0.70 2.21 5.06 -446.51 -2.26 -0.05 16 10 C 0.59 2.25 7.74 86.44 0.67 2.92 16 11 O -0.58 -6.35 14.42 -4.33 -0.06 -6.42 16 12 C -0.06 -0.14 6.88 40.35 0.28 0.14 16 13 C -0.09 0.18 10.34 22.58 0.23 0.42 16 14 C -0.18 0.06 6.04 22.03 0.13 0.20 16 15 Br 0.03 -0.13 29.42 -20.37 -0.60 -0.73 16 16 C 0.05 0.10 5.46 41.34 0.23 0.33 16 17 C -0.05 -0.07 2.82 71.24 0.20 0.13 16 18 O -0.54 -1.40 12.88 -148.98 -1.92 -3.32 16 19 Si 0.72 0.78 29.75 68.60 2.04 2.82 16 20 N -0.40 -1.43 3.16 -519.61 -1.64 -3.07 16 21 C 0.06 0.09 10.25 127.77 1.31 1.40 16 22 C -0.12 0.22 5.49 30.59 0.17 0.39 16 23 C -0.10 0.07 5.16 30.60 0.16 0.23 16 24 H 0.24 -0.93 7.80 -4.42 -0.03 -0.97 16 25 H 0.08 -0.40 8.14 -2.39 -0.02 -0.42 16 26 H 0.06 -0.09 8.14 -2.38 -0.02 -0.11 16 27 H 0.10 -1.05 8.14 -2.38 -0.02 -1.07 16 28 H 0.08 -0.67 8.14 -2.39 -0.02 -0.69 16 29 H 0.42 -3.98 7.50 -92.70 -0.70 -4.68 16 30 H 0.19 -1.73 7.45 -2.91 -0.02 -1.75 16 31 H 0.12 0.01 6.32 -2.38 -0.02 -0.01 16 32 H 0.39 -0.94 7.11 -74.05 -0.53 -1.47 16 33 H -0.28 -1.72 7.11 99.48 0.71 -1.01 16 34 H -0.26 -1.48 7.11 99.48 0.71 -0.78 16 35 H 0.09 0.10 8.14 -2.39 -0.02 0.08 16 36 H 0.10 -0.29 6.66 -2.39 -0.02 -0.30 16 37 H 0.10 0.38 6.59 -2.39 -0.02 0.37 16 38 H 0.09 -0.42 8.14 -2.38 -0.02 -0.44 16 39 H 0.05 0.15 8.14 -2.38 -0.02 0.13 16 40 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 41 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 Total: 0.00 -17.00 354.88 1.03 -15.97 By element: Atomic # 1 Polarization: -13.26 SS G_CDS: -0.12 Total: -13.38 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: 5.60 Total: 8.18 kcal Atomic # 7 Polarization: 0.79 SS G_CDS: -3.90 Total: -3.12 kcal Atomic # 8 Polarization: -7.75 SS G_CDS: -1.98 Total: -9.73 kcal Atomic # 14 Polarization: 0.78 SS G_CDS: 2.04 Total: 2.82 kcal Atomic # 35 Polarization: -0.13 SS G_CDS: -0.60 Total: -0.73 kcal Total: -17.00 1.03 -15.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12865462_5000100.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.726 kcal (2) G-P(sol) polarization free energy of solvation -17.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds