Wall clock time and date at job start Tue Mar 9 2021 13:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 H 1.08995 * 109.46940 * 101.34568 * 3 2 1 5 5 C 1.52997 * 109.47107 * 221.34635 * 3 2 1 6 6 C 1.53003 * 109.47127 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.47010 * 300.00125 * 6 5 3 8 8 H 1.08995 * 109.47098 * 299.99700 * 7 6 5 9 9 N 1.46498 * 109.47257 * 179.97438 * 7 6 5 10 10 C 1.34777 * 119.99828 * 84.72116 * 9 7 6 11 11 O 1.21693 * 120.00014 * 0.28042 * 10 9 7 12 12 C 1.46682 * 120.00182 * 180.27909 * 10 9 7 13 13 C 1.37865 * 126.23190 * 180.02562 * 12 10 9 14 14 C 1.39839 * 107.08096 * 179.97438 * 13 12 10 15 15 C 1.35445 * 107.86750 * 0.02562 * 14 13 12 16 16 C 1.50698 * 125.56667 * 179.97438 * 15 14 13 17 17 O 1.42902 * 109.47233 * 120.02427 * 16 15 14 18 18 Si 1.86302 * 109.47073 * 0.02562 * 16 15 14 19 19 N 1.35535 * 108.87138 * 359.76872 * 15 14 13 20 20 C 1.53004 * 109.47083 * 59.99777 * 7 6 5 21 21 C 1.52994 * 109.47215 * 299.99913 * 20 7 6 22 22 H 4.18737 * 15.03837 * 0.02562 * 4 2 1 23 23 H 1.08996 * 109.47253 * 300.00046 * 5 3 2 24 24 H 1.09003 * 109.47446 * 59.99890 * 5 3 2 25 25 H 1.08996 * 109.47248 * 179.97438 * 6 5 3 26 26 H 1.08995 * 109.46945 * 59.99919 * 6 5 3 27 27 H 0.97001 * 120.00384 * 265.00562 * 9 7 6 28 28 H 1.07998 * 126.46374 * 359.97438 * 13 12 10 29 29 H 1.08003 * 126.06763 * 179.97438 * 14 13 12 30 30 H 1.09000 * 109.47412 * 240.02455 * 16 15 14 31 31 H 0.96695 * 113.99934 * 180.02562 * 17 16 15 32 32 H 1.48493 * 109.99935 * 298.68055 * 18 16 15 33 33 H 1.48506 * 109.99828 * 60.00289 * 18 16 15 34 34 H 0.96998 * 125.67897 * 180.26976 * 19 15 14 35 35 H 1.08994 * 109.46839 * 60.00381 * 20 7 6 36 36 H 1.08998 * 109.46617 * 179.97438 * 20 7 6 37 37 H 1.08996 * 109.47083 * 180.02562 * 21 20 7 38 38 H 1.09003 * 109.47213 * 300.00438 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 1 3.0093 0.2030 -1.0075 5 6 3.1556 1.0838 0.9529 6 6 4.6856 1.0849 0.9524 7 6 5.1967 -0.2815 1.4134 8 1 4.8339 -0.4841 2.4210 9 7 6.6617 -0.2807 1.4124 10 6 7.3360 0.1931 2.4788 11 8 6.7280 0.6156 3.4446 12 6 8.8028 0.1996 2.4753 13 6 9.6181 0.6514 3.4912 14 6 10.9389 0.4718 3.0685 15 6 10.9081 -0.0738 1.8292 16 6 12.1136 -0.4326 0.9992 17 8 12.0960 -1.8327 0.7139 18 14 13.6643 -0.0103 1.9415 19 7 9.6160 -0.2486 1.4592 20 6 4.6871 -1.3647 0.4605 21 6 3.1572 -1.3658 0.4610 22 1 -1.0500 0.0004 0.0003 23 1 2.7918 2.0573 0.6243 24 1 2.7923 0.8815 1.9605 25 1 5.0486 1.8568 1.6309 26 1 5.0484 1.2875 -0.0552 27 1 7.1464 -0.6174 0.6426 28 1 9.2972 1.0659 4.4354 29 1 11.8262 0.7243 3.6302 30 1 12.0919 0.1288 0.0651 31 1 12.8447 -2.1352 0.1821 32 1 13.7101 1.4482 2.2165 33 1 13.7060 -0.7695 3.2172 34 1 9.3145 -0.6257 0.6179 35 1 5.0500 -1.1621 -0.5471 36 1 5.0517 -2.3380 0.7887 37 1 2.7942 -2.1377 -0.2175 38 1 2.7943 -1.5683 1.4687 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12865462_6580494.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:13:28 Heat of formation + Delta-G solvation = 20.015135 kcal Electronic energy + Delta-G solvation = -20652.605294 eV Core-core repulsion = 17463.166352 eV Total energy + Delta-G solvation = -3189.438942 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.65691 -40.92752 -39.32640 -37.62916 -36.03485 -33.72046 -32.35974 -31.90632 -31.67937 -30.04090 -26.88515 -24.45804 -23.83839 -22.80607 -21.72046 -21.51193 -21.03705 -19.60384 -19.06738 -18.44267 -17.47792 -17.01128 -16.49172 -16.11326 -15.76204 -15.49638 -15.34633 -15.29166 -15.13895 -14.67825 -14.44220 -14.17854 -13.94676 -13.79267 -13.53984 -13.30730 -12.83889 -12.72720 -12.39644 -12.21770 -12.04464 -11.99707 -11.69434 -11.38013 -11.00097 -10.95541 -10.47538 -10.30948 -10.24737 -9.38806 -4.93058 0.17457 1.19222 1.37083 1.75322 1.83457 1.83861 1.87969 2.02560 2.10964 2.15544 3.29734 3.35072 3.55504 3.67199 3.72642 3.82087 4.01596 4.02687 4.09704 4.16117 4.18116 4.32026 4.35877 4.40926 4.41512 4.60778 4.68918 4.78051 4.84824 4.95476 4.99927 5.05779 5.07506 5.16671 5.23498 5.27540 5.37005 5.44464 5.59372 6.19142 6.38441 6.67229 6.85474 6.96488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.211 4.211 3 C 0.021 3.979 4 H 0.107 0.893 5 C -0.103 4.103 6 C -0.122 4.122 7 C 0.145 3.855 8 H 0.068 0.932 9 N -0.710 5.710 10 C 0.591 3.409 11 O -0.568 6.568 12 C -0.059 4.059 13 C -0.120 4.120 14 C -0.232 4.232 15 C 0.070 3.930 16 C -0.061 4.061 17 O -0.565 6.565 18 Si 0.810 3.190 19 N -0.504 5.504 20 C -0.116 4.116 21 C -0.104 4.104 22 H 0.237 0.763 23 H 0.070 0.930 24 H 0.056 0.944 25 H 0.050 0.950 26 H 0.085 0.915 27 H 0.411 0.589 28 H 0.145 0.855 29 H 0.143 0.857 30 H 0.109 0.891 31 H 0.410 0.590 32 H -0.290 1.290 33 H -0.302 1.302 34 H 0.433 0.567 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.693 -2.634 -8.901 10.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.211 4.211 3 C 0.003 3.997 4 H 0.125 0.875 5 C -0.142 4.142 6 C -0.161 4.161 7 C 0.041 3.959 8 H 0.086 0.914 9 N -0.360 5.360 10 C 0.379 3.621 11 O -0.447 6.447 12 C -0.173 4.173 13 C -0.147 4.147 14 C -0.256 4.256 15 C -0.050 4.050 16 C -0.170 4.170 17 O -0.376 6.376 18 Si 0.715 3.285 19 N -0.102 5.102 20 C -0.154 4.154 21 C -0.142 4.142 22 H 0.254 0.746 23 H 0.089 0.911 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.104 0.896 27 H 0.247 0.753 28 H 0.163 0.837 29 H 0.160 0.840 30 H 0.126 0.874 31 H 0.263 0.737 32 H -0.217 1.217 33 H -0.230 1.230 34 H 0.273 0.727 35 H 0.113 0.887 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.935 -2.071 -7.319 8.564 hybrid contribution -0.936 0.036 -0.138 0.946 sum 2.999 -2.035 -7.457 8.291 Atomic orbital electron populations 1.25692 0.96992 0.99883 1.00383 1.23583 0.95231 1.01232 1.01028 1.18438 0.83667 0.96349 1.01219 0.87471 1.21449 0.94680 0.98734 0.99305 1.21855 0.95167 0.96613 1.02435 1.21080 0.78059 0.96161 1.00641 0.91379 1.45801 1.07693 1.63843 1.18702 1.17123 0.84939 0.77148 0.82852 1.90847 1.69141 1.48950 1.35796 1.20311 0.90212 1.13896 0.92879 1.21411 0.92098 1.02160 0.99005 1.20713 0.97583 1.10923 0.96367 1.20484 0.85130 1.03323 0.96061 1.24626 1.01267 0.86840 1.04289 1.86416 1.53494 1.20602 1.77072 0.94265 0.78787 0.76666 0.78759 1.41834 1.04853 1.47053 1.16452 1.21764 0.95247 0.98134 1.00220 1.21464 0.94690 0.95793 1.02222 0.74604 0.91094 0.92526 0.93106 0.89619 0.75276 0.83697 0.83978 0.87353 0.73687 1.21745 1.22998 0.72665 0.88665 0.89977 0.89892 0.92194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -0.56 19.25 74.32 1.43 0.87 16 2 C -0.21 -0.77 12.56 31.13 0.39 -0.37 16 3 C 0.02 -0.02 2.56 -12.60 -0.03 -0.05 16 4 H 0.11 -0.40 8.14 -2.39 -0.02 -0.42 16 5 C -0.10 -0.08 5.16 30.59 0.16 0.08 16 6 C -0.12 -0.03 5.49 30.60 0.17 0.14 16 7 C 0.14 -0.01 2.45 44.99 0.11 0.10 16 8 H 0.07 0.39 7.58 -2.39 -0.02 0.37 16 9 N -0.71 0.32 5.07 -446.50 -2.27 -1.94 16 10 C 0.59 4.67 7.75 86.45 0.67 5.34 16 11 O -0.57 -9.45 16.55 -4.33 -0.07 -9.53 16 12 C -0.06 -0.39 7.06 40.35 0.28 -0.10 16 13 C -0.12 -1.13 10.65 22.57 0.24 -0.89 16 14 C -0.23 -1.59 9.32 22.01 0.21 -1.38 16 15 C 0.07 0.17 6.51 41.34 0.27 0.44 16 16 C -0.06 0.31 3.07 71.24 0.22 0.53 16 17 O -0.57 3.21 12.86 -148.98 -1.92 1.29 16 18 Si 0.81 -3.97 30.54 68.60 2.10 -1.87 16 19 N -0.50 -0.20 5.99 -171.94 -1.03 -1.23 16 20 C -0.12 0.64 5.39 30.59 0.16 0.80 16 21 C -0.10 0.29 5.16 30.59 0.16 0.45 16 22 H 0.24 -0.85 7.80 -4.42 -0.03 -0.88 16 23 H 0.07 0.07 8.14 -2.39 -0.02 0.05 16 24 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 25 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 26 H 0.09 -0.29 8.14 -2.39 -0.02 -0.31 16 27 H 0.41 -3.03 7.73 -92.71 -0.72 -3.74 16 28 H 0.15 1.42 8.06 -2.91 -0.02 1.39 16 29 H 0.14 0.82 6.17 -2.91 -0.02 0.80 16 30 H 0.11 -1.16 7.96 -2.39 -0.02 -1.18 16 31 H 0.41 -6.67 8.74 -74.06 -0.65 -7.32 16 32 H -0.29 -0.40 7.11 99.48 0.71 0.31 16 33 H -0.30 -1.25 7.11 99.48 0.71 -0.54 16 34 H 0.43 -2.85 8.19 -92.71 -0.76 -3.61 16 35 H 0.09 -0.91 8.14 -2.39 -0.02 -0.93 16 36 H 0.08 -0.50 8.14 -2.39 -0.02 -0.52 16 37 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 38 H 0.06 -0.01 8.14 -2.39 -0.02 -0.03 16 Total: 0.00 -24.04 323.12 0.25 -23.79 By element: Atomic # 1 Polarization: -15.47 SS G_CDS: -1.00 Total: -16.46 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: 4.44 Total: 5.95 kcal Atomic # 7 Polarization: 0.12 SS G_CDS: -3.30 Total: -3.17 kcal Atomic # 8 Polarization: -6.25 SS G_CDS: -1.99 Total: -8.23 kcal Atomic # 14 Polarization: -3.97 SS G_CDS: 2.10 Total: -1.87 kcal Total: -24.04 0.25 -23.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12865462_6580494.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.805 kcal (2) G-P(sol) polarization free energy of solvation -24.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds