Wall clock time and date at job start Tue Mar 9 2021 13:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 H 1.09001 * 109.47046 * 130.25833 * 3 2 1 5 5 C 1.52997 * 109.47080 * 250.26071 * 3 2 1 6 6 C 1.52996 * 109.46975 * 180.02562 * 5 3 2 7 7 C 1.53005 * 109.47245 * 299.99595 * 6 5 3 8 8 H 1.09001 * 109.46962 * 300.00283 * 7 6 5 9 9 N 1.46496 * 109.47399 * 179.97438 * 7 6 5 10 10 C 1.34777 * 119.99714 * 85.00186 * 9 7 6 11 11 O 1.21639 * 120.00131 * 359.97438 * 10 9 7 12 12 C 1.47186 * 120.00141 * 179.97438 * 10 9 7 13 13 C 1.36012 * 123.45919 * 0.02841 * 12 10 9 14 14 S 1.70453 * 110.81494 * 179.97438 * 13 12 10 15 15 C 1.75501 * 92.44534 * 359.97438 * 14 13 12 16 16 C 1.50706 * 124.71109 * 180.02562 * 15 14 13 17 17 O 1.42901 * 109.46964 * 119.97668 * 16 15 14 18 18 Si 1.86303 * 109.47001 * 359.97438 * 16 15 14 19 19 C 1.32770 * 110.57636 * 359.73925 * 15 14 13 20 20 C 1.53000 * 109.46632 * 59.99973 * 7 6 5 21 21 C 1.52996 * 109.47518 * 300.00318 * 20 7 6 22 22 H 4.18741 * 15.03726 * 0.02562 * 4 2 1 23 23 H 1.09000 * 109.47140 * 299.99946 * 5 3 2 24 24 H 1.09001 * 109.47375 * 59.99964 * 5 3 2 25 25 H 1.09004 * 109.47108 * 179.97438 * 6 5 3 26 26 H 1.09001 * 109.47372 * 59.99628 * 6 5 3 27 27 H 0.96992 * 120.00382 * 265.00389 * 9 7 6 28 28 H 1.07994 * 124.59278 * 359.93919 * 13 12 10 29 29 H 1.08991 * 109.47141 * 239.97627 * 16 15 14 30 30 H 0.96701 * 114.00296 * 180.02562 * 17 16 15 31 31 H 1.48494 * 109.99854 * 298.67781 * 18 16 15 32 32 H 1.48497 * 109.99874 * 59.99972 * 18 16 15 33 33 H 1.07999 * 123.45784 * 180.24793 * 19 15 14 34 34 H 1.09004 * 109.46724 * 179.97438 * 20 7 6 35 35 H 1.09001 * 109.47194 * 60.00452 * 20 7 6 36 36 H 1.09001 * 109.46993 * 299.99696 * 21 20 7 37 37 H 1.09004 * 109.47298 * 180.02562 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0090 0.6649 -0.7843 5 6 3.1557 0.4881 1.3577 6 6 4.6857 0.4894 1.3575 7 6 5.1969 -0.9297 1.1003 8 1 4.8342 -1.5942 1.8845 9 7 6.6619 -0.9284 1.0995 10 6 7.3365 -1.0347 2.2614 11 8 6.7289 -1.1314 3.3108 12 6 8.8083 -1.0340 2.2606 13 6 9.5575 -0.9293 1.1303 14 16 11.2210 -0.9621 1.5010 15 6 10.9112 -1.1199 3.2212 16 6 11.9791 -1.2157 4.2803 17 8 11.8403 -0.1277 5.1964 18 14 13.6585 -1.1410 3.4772 19 6 9.6054 -1.1371 3.4606 20 6 4.6870 -1.4171 -0.2574 21 6 3.1571 -1.4183 -0.2572 22 1 -1.0500 -0.0001 0.0009 23 1 2.7920 1.4991 1.5408 24 1 2.7927 -0.1762 2.1420 25 1 5.0489 0.8370 2.3246 26 1 5.0484 1.1539 0.5732 27 1 7.1463 -0.8509 0.2628 28 1 9.1533 -0.8384 0.1330 29 1 11.8748 -2.1583 4.8172 30 1 12.4967 -0.1253 5.9065 31 1 13.8275 -2.2852 2.5459 32 1 13.8133 0.1397 2.7417 33 1 9.1826 -1.2231 4.4507 34 1 5.0516 -2.4278 -0.4408 35 1 5.0497 -0.7526 -1.0416 36 1 2.7944 -2.0829 0.5269 37 1 2.7939 -1.7660 -1.2244 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12865462_6894386.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:13:36 Heat of formation + Delta-G solvation = 9.042199 kcal Electronic energy + Delta-G solvation = -20293.622029 eV Core-core repulsion = 17130.059282 eV Total energy + Delta-G solvation = -3163.562747 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 292.092 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.22445 -39.63920 -38.55724 -37.13928 -35.82253 -33.58274 -31.98329 -31.90833 -29.93764 -26.97008 -25.85035 -23.85781 -23.66167 -21.72832 -21.30928 -20.29386 -19.05125 -18.80878 -18.43686 -18.04546 -17.09473 -16.32454 -16.18045 -15.85852 -15.64323 -15.38401 -15.24934 -14.83540 -14.36706 -14.12905 -14.07879 -13.82048 -13.73383 -13.59009 -13.30644 -12.76672 -12.66649 -12.37493 -12.24316 -12.21341 -12.09542 -11.91084 -11.65131 -10.98374 -10.90715 -10.81504 -10.53411 -10.09695 -9.94357 -9.51189 -5.32049 -0.37201 0.35072 0.70617 0.91061 1.13294 1.50280 1.81643 1.93886 1.96696 2.09399 2.38858 3.25511 3.36190 3.55635 3.62985 3.68798 3.82869 3.97716 4.04642 4.09698 4.18225 4.25702 4.33434 4.35007 4.38223 4.40300 4.63394 4.66257 4.71750 4.92960 4.98781 5.04699 5.05099 5.10639 5.19084 5.21617 5.26481 5.33879 5.49066 6.46546 6.51158 6.75288 7.23417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.186 4.186 3 C 0.020 3.980 4 H 0.093 0.907 5 C -0.108 4.108 6 C -0.129 4.129 7 C 0.145 3.855 8 H 0.093 0.907 9 N -0.723 5.723 10 C 0.580 3.420 11 O -0.529 6.529 12 C -0.154 4.154 13 C -0.203 4.203 14 S 0.174 5.826 15 C -0.198 4.198 16 C -0.034 4.034 17 O -0.542 6.542 18 Si 0.671 3.329 19 C -0.049 4.049 20 C -0.126 4.126 21 C -0.106 4.106 22 H 0.217 0.783 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.398 0.602 28 H 0.172 0.828 29 H 0.085 0.915 30 H 0.385 0.615 31 H -0.238 1.238 32 H -0.234 1.234 33 H 0.159 0.841 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.124 -1.014 -1.983 4.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.186 4.186 3 C 0.002 3.998 4 H 0.111 0.889 5 C -0.146 4.146 6 C -0.168 4.168 7 C 0.041 3.959 8 H 0.111 0.889 9 N -0.375 5.375 10 C 0.366 3.634 11 O -0.406 6.406 12 C -0.172 4.172 13 C -0.341 4.341 14 S 0.439 5.561 15 C -0.314 4.314 16 C -0.147 4.147 17 O -0.349 6.349 18 Si 0.569 3.431 19 C -0.078 4.078 20 C -0.164 4.164 21 C -0.144 4.144 22 H 0.234 0.766 23 H 0.090 0.910 24 H 0.089 0.911 25 H 0.093 0.907 26 H 0.086 0.914 27 H 0.233 0.767 28 H 0.190 0.810 29 H 0.103 0.897 30 H 0.233 0.767 31 H -0.162 1.162 32 H -0.158 1.158 33 H 0.176 0.824 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.960 -0.802 -3.261 5.990 hybrid contribution -1.894 -0.076 0.320 1.922 sum 3.066 -0.878 -2.940 4.338 Atomic orbital electron populations 1.24977 0.96005 1.00449 1.00580 1.22990 0.94226 1.00724 1.00660 1.18369 0.84498 0.97963 0.98998 0.88946 1.21514 0.94744 1.02259 0.96046 1.21941 0.95242 0.96571 1.03051 1.21061 0.78565 0.97595 0.98728 0.88926 1.45912 1.07300 1.75382 1.08864 1.17572 0.85986 0.76053 0.83827 1.90823 1.69618 1.49115 1.31076 1.20260 0.93979 1.10225 0.92779 1.25793 0.99487 1.06007 1.02794 1.83171 1.03798 1.69075 1.00008 1.23431 0.97455 1.13480 0.97072 1.23993 1.04921 0.92862 0.92959 1.86521 1.58891 1.47342 1.42156 0.94708 0.81149 0.82544 0.84653 1.21035 0.90763 0.97021 0.98945 1.21822 0.96004 1.02284 0.96315 1.21491 0.94170 0.95704 1.03079 0.76608 0.90991 0.91053 0.90749 0.91420 0.76738 0.81049 0.89737 0.76669 1.16153 1.15775 0.82399 0.90652 0.90979 0.90973 0.90756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.30 19.25 29.55 0.57 0.27 16 2 C -0.19 -0.36 12.56 -37.12 -0.47 -0.82 16 3 C 0.02 0.00 2.56 -93.41 -0.24 -0.24 16 4 H 0.09 -0.08 8.14 -51.93 -0.42 -0.50 16 5 C -0.11 -0.03 5.16 -26.73 -0.14 -0.16 16 6 C -0.13 -0.03 5.49 -26.73 -0.15 -0.18 16 7 C 0.14 0.01 2.45 -67.93 -0.17 -0.16 16 8 H 0.09 0.19 7.58 -51.93 -0.39 -0.20 16 9 N -0.72 -0.08 5.05 -54.95 -0.28 -0.35 16 10 C 0.58 1.98 7.76 -12.63 -0.10 1.88 16 11 O -0.53 -3.79 16.46 5.24 0.09 -3.70 16 12 C -0.15 -0.38 5.98 -104.63 -0.63 -1.01 16 13 C -0.20 -0.02 10.38 29.93 0.31 0.29 16 14 S 0.17 0.15 20.18 -107.50 -2.17 -2.02 16 15 C -0.20 -0.41 5.72 -36.18 -0.21 -0.61 16 16 C -0.03 0.01 2.94 36.01 0.11 0.12 16 17 O -0.54 -0.04 12.82 -35.23 -0.45 -0.50 16 18 Si 0.67 -1.14 30.91 -169.99 -5.25 -6.39 16 19 C -0.05 -0.16 9.91 -39.02 -0.39 -0.54 16 20 C -0.13 0.25 5.39 -26.73 -0.14 0.10 16 21 C -0.11 0.11 5.16 -26.73 -0.14 -0.03 16 22 H 0.22 -0.32 7.80 -54.09 -0.42 -0.74 16 23 H 0.07 0.03 8.14 -51.93 -0.42 -0.40 16 24 H 0.07 0.07 8.14 -51.93 -0.42 -0.35 16 25 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 26 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 27 H 0.40 -1.05 7.10 -40.82 -0.29 -1.34 16 28 H 0.17 -0.55 7.01 -52.49 -0.37 -0.92 16 29 H 0.08 -0.17 7.96 -51.93 -0.41 -0.58 16 30 H 0.39 -1.98 8.74 45.56 0.40 -1.59 16 31 H -0.24 -0.06 7.11 56.52 0.40 0.35 16 32 H -0.23 -0.27 7.11 56.52 0.40 0.13 16 33 H 0.16 0.58 8.06 -52.49 -0.42 0.16 16 34 H 0.07 -0.17 8.14 -51.93 -0.42 -0.59 16 35 H 0.07 -0.22 8.14 -51.93 -0.42 -0.64 16 36 H 0.07 -0.02 8.14 -51.93 -0.42 -0.45 16 37 H 0.07 -0.09 8.14 -51.93 -0.42 -0.52 16 LS Contribution 327.87 15.07 4.94 4.94 Total: 0.00 -8.20 327.87 -9.81 -18.01 By element: Atomic # 1 Polarization: -3.99 SS G_CDS: -4.91 Total: -8.90 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -1.77 Total: -1.09 kcal Atomic # 7 Polarization: -0.08 SS G_CDS: -0.28 Total: -0.35 kcal Atomic # 8 Polarization: -3.83 SS G_CDS: -0.37 Total: -4.20 kcal Atomic # 14 Polarization: -1.14 SS G_CDS: -5.25 Total: -6.39 kcal Atomic # 16 Polarization: 0.15 SS G_CDS: -2.17 Total: -2.02 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -8.20 -9.81 -18.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12865462_6894386.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.055 kcal (2) G-P(sol) polarization free energy of solvation -8.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds