Wall clock time and date at job start Tue Mar 9 2021 13:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 H 1.09001 * 109.47046 * 130.25833 * 3 2 1 5 5 C 1.52997 * 109.47080 * 250.26071 * 3 2 1 6 6 C 1.52996 * 109.46975 * 180.02562 * 5 3 2 7 7 C 1.53005 * 109.47245 * 299.99595 * 6 5 3 8 8 H 1.09001 * 109.46962 * 300.00283 * 7 6 5 9 9 N 1.46496 * 109.47399 * 179.97438 * 7 6 5 10 10 C 1.34777 * 119.99714 * 85.00186 * 9 7 6 11 11 O 1.21639 * 120.00131 * 359.97438 * 10 9 7 12 12 C 1.47186 * 120.00141 * 179.97438 * 10 9 7 13 13 C 1.36012 * 123.45919 * 0.02841 * 12 10 9 14 14 S 1.70453 * 110.81494 * 179.97438 * 13 12 10 15 15 C 1.75501 * 92.44534 * 359.97438 * 14 13 12 16 16 C 1.50706 * 124.71109 * 180.02562 * 15 14 13 17 17 O 1.42901 * 109.46964 * 119.97668 * 16 15 14 18 18 Si 1.86303 * 109.47001 * 359.97438 * 16 15 14 19 19 C 1.32770 * 110.57636 * 359.73925 * 15 14 13 20 20 C 1.53000 * 109.46632 * 59.99973 * 7 6 5 21 21 C 1.52996 * 109.47518 * 300.00318 * 20 7 6 22 22 H 4.18741 * 15.03726 * 0.02562 * 4 2 1 23 23 H 1.09000 * 109.47140 * 299.99946 * 5 3 2 24 24 H 1.09001 * 109.47375 * 59.99964 * 5 3 2 25 25 H 1.09004 * 109.47108 * 179.97438 * 6 5 3 26 26 H 1.09001 * 109.47372 * 59.99628 * 6 5 3 27 27 H 0.96992 * 120.00382 * 265.00389 * 9 7 6 28 28 H 1.07994 * 124.59278 * 359.93919 * 13 12 10 29 29 H 1.08991 * 109.47141 * 239.97627 * 16 15 14 30 30 H 0.96701 * 114.00296 * 180.02562 * 17 16 15 31 31 H 1.48494 * 109.99854 * 298.67781 * 18 16 15 32 32 H 1.48497 * 109.99874 * 59.99972 * 18 16 15 33 33 H 1.07999 * 123.45784 * 180.24793 * 19 15 14 34 34 H 1.09004 * 109.46724 * 179.97438 * 20 7 6 35 35 H 1.09001 * 109.47194 * 60.00452 * 20 7 6 36 36 H 1.09001 * 109.46993 * 299.99696 * 21 20 7 37 37 H 1.09004 * 109.47298 * 180.02562 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0090 0.6649 -0.7843 5 6 3.1557 0.4881 1.3577 6 6 4.6857 0.4894 1.3575 7 6 5.1969 -0.9297 1.1003 8 1 4.8342 -1.5942 1.8845 9 7 6.6619 -0.9284 1.0995 10 6 7.3365 -1.0347 2.2614 11 8 6.7289 -1.1314 3.3108 12 6 8.8083 -1.0340 2.2606 13 6 9.5575 -0.9293 1.1303 14 16 11.2210 -0.9621 1.5010 15 6 10.9112 -1.1199 3.2212 16 6 11.9791 -1.2157 4.2803 17 8 11.8403 -0.1277 5.1964 18 14 13.6585 -1.1410 3.4772 19 6 9.6054 -1.1371 3.4606 20 6 4.6870 -1.4171 -0.2574 21 6 3.1571 -1.4183 -0.2572 22 1 -1.0500 -0.0001 0.0009 23 1 2.7920 1.4991 1.5408 24 1 2.7927 -0.1762 2.1420 25 1 5.0489 0.8370 2.3246 26 1 5.0484 1.1539 0.5732 27 1 7.1463 -0.8509 0.2628 28 1 9.1533 -0.8384 0.1330 29 1 11.8748 -2.1583 4.8172 30 1 12.4967 -0.1253 5.9065 31 1 13.8275 -2.2852 2.5459 32 1 13.8133 0.1397 2.7417 33 1 9.1826 -1.2231 4.4507 34 1 5.0516 -2.4278 -0.4408 35 1 5.0497 -0.7526 -1.0416 36 1 2.7944 -2.0829 0.5269 37 1 2.7939 -1.7660 -1.2244 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12865462_6894386.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:13:36 Heat of formation + Delta-G solvation = 10.767048 kcal Electronic energy + Delta-G solvation = -20293.547234 eV Core-core repulsion = 17130.059282 eV Total energy + Delta-G solvation = -3163.487952 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 292.092 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.38038 -39.69373 -38.62309 -37.19209 -35.96887 -33.67717 -32.04366 -31.88921 -29.98573 -27.01592 -25.95157 -23.84371 -23.69905 -21.86269 -21.33425 -20.40665 -19.07047 -18.83936 -18.40807 -18.19295 -17.16204 -16.40856 -16.28671 -15.93836 -15.68853 -15.42902 -15.24465 -14.93748 -14.37712 -14.15860 -14.08743 -13.90808 -13.81633 -13.71004 -13.29046 -12.80783 -12.68567 -12.45600 -12.26906 -12.20277 -12.11045 -11.97093 -11.67145 -11.14595 -10.98330 -10.93582 -10.50899 -10.23666 -9.99994 -9.60668 -5.19468 -0.45490 0.27352 0.61857 0.74078 1.19766 1.59989 1.84329 1.87380 1.88706 2.00734 2.18550 3.31408 3.37667 3.58423 3.68660 3.70367 3.81798 3.94922 4.03923 4.11907 4.17370 4.20064 4.34258 4.38361 4.41907 4.42550 4.60424 4.64733 4.70452 4.89398 4.96893 5.01310 5.06109 5.08255 5.08927 5.19101 5.25695 5.31761 5.43085 6.40842 6.67594 6.83683 7.08661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.211 4.211 3 C 0.021 3.979 4 H 0.107 0.893 5 C -0.103 4.103 6 C -0.123 4.123 7 C 0.145 3.855 8 H 0.066 0.934 9 N -0.706 5.706 10 C 0.577 3.423 11 O -0.579 6.579 12 C -0.178 4.178 13 C -0.182 4.182 14 S 0.185 5.815 15 C -0.211 4.211 16 C -0.051 4.051 17 O -0.564 6.564 18 Si 0.760 3.240 19 C -0.072 4.072 20 C -0.116 4.116 21 C -0.104 4.104 22 H 0.238 0.762 23 H 0.069 0.931 24 H 0.056 0.944 25 H 0.048 0.952 26 H 0.085 0.915 27 H 0.415 0.585 28 H 0.208 0.792 29 H 0.100 0.900 30 H 0.406 0.594 31 H -0.260 1.260 32 H -0.273 1.273 33 H 0.140 0.860 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.059 0.941 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.029 -1.035 -3.816 6.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.211 4.211 3 C 0.003 3.997 4 H 0.125 0.875 5 C -0.141 4.141 6 C -0.161 4.161 7 C 0.041 3.959 8 H 0.084 0.916 9 N -0.357 5.357 10 C 0.364 3.636 11 O -0.460 6.460 12 C -0.196 4.196 13 C -0.320 4.320 14 S 0.451 5.549 15 C -0.328 4.328 16 C -0.162 4.162 17 O -0.375 6.375 18 Si 0.661 3.339 19 C -0.101 4.101 20 C -0.153 4.153 21 C -0.142 4.142 22 H 0.254 0.746 23 H 0.088 0.912 24 H 0.074 0.926 25 H 0.067 0.933 26 H 0.103 0.897 27 H 0.252 0.748 28 H 0.225 0.775 29 H 0.118 0.882 30 H 0.258 0.742 31 H -0.186 1.186 32 H -0.198 1.198 33 H 0.158 0.842 34 H 0.102 0.898 35 H 0.113 0.887 36 H 0.078 0.922 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.866 -0.827 -5.098 7.815 hybrid contribution -2.180 -0.042 0.889 2.354 sum 3.686 -0.870 -4.209 5.662 Atomic orbital electron populations 1.25688 0.96985 1.00132 1.00160 1.23584 0.95231 1.01128 1.01111 1.18439 0.83674 0.98803 0.98780 0.87522 1.21446 0.94709 1.01795 0.96193 1.21858 0.95138 0.96923 1.02203 1.21048 0.78426 0.97021 0.99451 0.91551 1.45773 1.07367 1.73858 1.08697 1.17803 0.86469 0.75421 0.83902 1.90793 1.70563 1.51736 1.32929 1.20191 0.93530 1.12464 0.93423 1.26144 0.98938 1.03258 1.03632 1.83164 1.04155 1.68543 0.99071 1.23813 0.97692 1.12756 0.98498 1.24333 1.05334 0.93481 0.93048 1.86469 1.60335 1.47568 1.43123 0.93595 0.78792 0.78899 0.82609 1.21047 0.91652 0.98591 0.98805 1.21764 0.95143 1.03219 0.95209 1.21467 0.94791 0.94855 1.03051 0.74582 0.91198 0.92558 0.93339 0.89678 0.74761 0.77470 0.88227 0.74247 1.18559 1.19838 0.84181 0.89812 0.88705 0.92199 0.89885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -0.64 19.25 74.32 1.43 0.79 16 2 C -0.21 -0.87 12.56 31.13 0.39 -0.47 16 3 C 0.02 0.00 2.56 -12.60 -0.03 -0.04 16 4 H 0.11 -0.32 8.14 -2.39 -0.02 -0.34 16 5 C -0.10 -0.16 5.16 30.59 0.16 0.00 16 6 C -0.12 -0.16 5.49 30.59 0.17 0.01 16 7 C 0.14 0.10 2.45 44.99 0.11 0.21 16 8 H 0.07 0.43 7.58 -2.39 -0.02 0.41 16 9 N -0.71 -0.14 5.05 -446.02 -2.25 -2.39 16 10 C 0.58 4.81 7.76 86.59 0.67 5.49 16 11 O -0.58 -10.11 16.46 -4.15 -0.07 -10.18 16 12 C -0.18 -1.04 5.98 -19.87 -0.12 -1.16 16 13 C -0.18 0.12 10.38 67.30 0.70 0.82 16 14 S 0.19 0.24 20.18 -56.49 -1.14 -0.90 16 15 C -0.21 -1.03 5.72 24.51 0.14 -0.89 16 16 C -0.05 0.02 2.94 71.24 0.21 0.23 16 17 O -0.56 -0.39 12.82 -148.98 -1.91 -2.30 16 18 Si 0.76 -2.86 30.91 68.60 2.12 -0.74 16 19 C -0.07 -0.60 9.91 22.67 0.22 -0.38 16 20 C -0.12 0.59 5.39 30.59 0.16 0.75 16 21 C -0.10 0.25 5.16 30.59 0.16 0.40 16 22 H 0.24 -0.78 7.80 -4.42 -0.03 -0.81 16 23 H 0.07 0.13 8.14 -2.39 -0.02 0.11 16 24 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 25 H 0.05 0.33 8.14 -2.38 -0.02 0.31 16 26 H 0.08 -0.18 8.14 -2.39 -0.02 -0.20 16 27 H 0.41 -2.89 7.10 -92.71 -0.66 -3.55 16 28 H 0.21 -1.90 7.01 -2.91 -0.02 -1.92 16 29 H 0.10 -0.39 7.96 -2.39 -0.02 -0.41 16 30 H 0.41 -4.20 8.74 -74.06 -0.65 -4.85 16 31 H -0.26 0.03 7.11 99.48 0.71 0.73 16 32 H -0.27 -0.69 7.11 99.48 0.71 0.02 16 33 H 0.14 1.54 8.06 -2.91 -0.02 1.51 16 34 H 0.08 -0.50 8.14 -2.39 -0.02 -0.52 16 35 H 0.09 -0.85 8.14 -2.39 -0.02 -0.87 16 36 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 37 H 0.08 -0.30 8.14 -2.38 -0.02 -0.32 16 Total: 0.00 -22.18 327.87 0.94 -21.24 By element: Atomic # 1 Polarization: -10.30 SS G_CDS: -0.18 Total: -10.48 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: 4.37 Total: 5.75 kcal Atomic # 7 Polarization: -0.14 SS G_CDS: -2.25 Total: -2.39 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: -1.98 Total: -12.48 kcal Atomic # 14 Polarization: -2.86 SS G_CDS: 2.12 Total: -0.74 kcal Atomic # 16 Polarization: 0.24 SS G_CDS: -1.14 Total: -0.90 kcal Total: -22.18 0.94 -21.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12865462_6894386.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.007 kcal (2) G-P(sol) polarization free energy of solvation -22.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds