Wall clock time and date at job start Tue Mar 9 2021 12:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86297 * 109.46965 * 2 1 4 4 C 1.50697 * 109.46824 * 119.99523 * 2 1 3 5 5 C 1.38359 * 120.34679 * 64.72925 * 4 2 1 6 6 C 1.40025 * 118.28529 * 179.73897 * 5 4 2 7 7 C 1.47842 * 120.55707 * 180.28368 * 6 5 4 8 8 O 1.21548 * 120.00076 * 0.22940 * 7 6 5 9 9 N 1.34781 * 120.00045 * 180.22774 * 7 6 5 10 10 C 1.46502 * 120.00209 * 175.01913 * 9 7 6 11 11 C 1.50702 * 112.84787 * 65.08639 * 10 9 7 12 12 C 1.38231 * 119.99805 * 197.54741 * 11 10 9 13 13 C 1.38241 * 119.99831 * 179.77068 * 12 11 10 14 14 C 1.38232 * 119.99858 * 0.50227 * 13 12 11 15 15 C 1.38231 * 120.00216 * 359.75466 * 14 13 12 16 16 C 1.38238 * 119.99920 * 17.82402 * 11 10 9 17 17 C 1.53783 * 113.61016 * 293.89250 * 10 9 7 18 18 C 1.53781 * 87.08075 * 270.88284 * 17 10 9 19 19 H 1.09000 * 113.61315 * 219.94205 * 18 17 10 20 20 O 1.42893 * 113.61370 * 89.11818 * 18 17 10 21 21 C 1.53781 * 113.61374 * 196.28340 * 10 9 7 22 22 C 1.39527 * 118.88433 * 0.50416 * 6 5 4 23 23 N 1.31689 * 120.56209 * 359.75400 * 22 6 5 24 24 C 1.31932 * 121.88422 * 0.02562 * 23 22 6 25 25 H 0.96699 * 114.00086 * 300.00149 * 1 2 3 26 26 H 1.08996 * 109.46868 * 239.99810 * 2 1 3 27 27 H 1.48501 * 110.00126 * 178.68170 * 3 2 1 28 28 H 1.48502 * 109.99998 * 299.99758 * 3 2 1 29 29 H 1.07995 * 120.86014 * 359.97165 * 5 4 2 30 30 H 0.96998 * 119.99760 * 355.01657 * 9 7 6 31 31 H 1.08004 * 120.00112 * 0.02562 * 12 11 10 32 32 H 1.08006 * 119.99425 * 180.23147 * 13 12 11 33 33 H 1.07996 * 119.99815 * 179.71947 * 14 13 12 34 34 H 1.08003 * 120.00533 * 179.97438 * 15 14 13 35 35 H 1.07997 * 119.99989 * 0.02562 * 16 11 10 36 36 H 1.08999 * 113.61779 * 25.43272 * 17 10 9 37 37 H 1.09000 * 113.60687 * 156.25318 * 17 10 9 38 38 H 0.96704 * 114.00392 * 179.97438 * 20 18 17 39 39 H 1.08993 * 113.61309 * 203.66306 * 21 10 9 40 40 H 1.08994 * 113.61614 * 334.57047 * 21 10 9 41 41 H 1.07999 * 119.71663 * 179.77505 * 22 6 5 42 42 H 1.07994 * 119.45879 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7103 1.2305 5 6 1.6837 -2.0599 1.4086 6 6 2.1751 -2.6776 2.5652 7 6 1.9451 -4.1185 2.8033 8 8 1.3285 -4.7781 1.9896 9 7 2.4192 -4.7007 3.9226 10 6 2.0991 -6.1007 4.2121 11 6 2.6898 -7.0559 3.2073 12 6 2.2029 -8.3460 3.1109 13 6 2.7416 -9.2208 2.1859 14 6 3.7741 -8.8086 1.3645 15 6 4.2646 -7.5202 1.4645 16 6 3.7224 -6.6437 2.3858 17 6 0.6070 -6.3461 4.4922 18 6 0.9175 -6.0559 5.9701 19 1 0.3901 -6.7108 6.6638 20 8 0.8063 -4.6744 6.3178 21 6 2.3614 -6.5032 5.6729 22 6 2.8815 -1.9095 3.4913 23 7 3.0868 -0.6261 3.2791 24 6 2.6396 -0.0185 2.1968 25 1 -0.3933 0.4417 0.7650 26 1 1.7923 -0.5139 -0.8899 27 1 3.5346 1.7703 0.0321 28 1 1.5615 2.4678 -1.2085 29 1 1.1290 -2.6231 0.6729 30 1 2.9725 -4.1928 4.5364 31 1 1.3988 -8.6693 3.7555 32 1 2.3586 -10.2277 2.1082 33 1 4.1980 -9.4935 0.6450 34 1 5.0716 -7.1982 0.8230 35 1 4.1061 -5.6372 2.4645 36 1 -0.0508 -5.6092 4.0313 37 1 0.2906 -7.3721 4.3044 38 1 1.0000 -4.4856 7.2462 39 1 2.5240 -7.5723 5.8087 40 1 3.1189 -5.8930 6.1646 41 1 3.2634 -2.3715 4.3897 42 1 2.8309 1.0358 2.0623 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12891110_13287814.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:58:17 Heat of formation + Delta-G solvation = -2.994636 kcal Electronic energy + Delta-G solvation = -27941.375991 eV Core-core repulsion = 24047.578657 eV Total energy + Delta-G solvation = -3893.797334 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.30501 -41.44731 -39.52796 -39.20558 -37.94663 -36.30731 -34.39273 -33.72333 -32.76488 -31.63735 -31.60994 -27.30643 -27.12841 -26.53370 -25.02765 -23.82834 -23.43368 -22.50568 -21.64336 -20.31612 -19.28863 -18.65953 -18.20794 -17.97442 -17.72277 -17.58334 -16.77907 -16.45139 -16.43492 -15.88905 -15.79462 -15.52551 -15.40444 -15.20669 -14.70533 -14.50067 -14.37573 -14.29709 -14.19612 -13.95691 -13.62124 -13.51628 -13.33290 -12.93377 -12.72912 -12.43653 -12.21504 -12.13966 -11.88099 -11.53346 -11.19107 -11.08138 -11.00073 -10.59704 -10.51170 -10.30911 -10.06569 -9.75176 -9.51192 -5.14682 -0.53085 0.01016 0.47179 0.56816 1.13840 1.52995 1.78606 1.86428 1.95193 2.68042 2.81627 2.95650 3.05441 3.31976 3.32767 3.41718 3.52091 3.62205 3.64291 3.67320 3.76859 3.79802 4.06813 4.13110 4.13458 4.19880 4.24057 4.28112 4.44112 4.51945 4.57782 4.62940 4.68234 4.74596 4.87447 4.89128 4.93766 4.99867 5.10459 5.16614 5.31909 5.40423 5.61119 5.68533 5.77250 6.13640 6.40678 6.45027 6.54874 6.65215 7.17511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.536 6.536 2 C -0.064 4.064 3 Si 0.687 3.313 4 C -0.180 4.180 5 C 0.011 3.989 6 C -0.185 4.185 7 C 0.567 3.433 8 O -0.515 6.515 9 N -0.695 5.695 10 C 0.200 3.800 11 C -0.071 4.071 12 C -0.113 4.113 13 C -0.117 4.117 14 C -0.121 4.121 15 C -0.118 4.118 16 C -0.100 4.100 17 C -0.131 4.131 18 C 0.080 3.920 19 H 0.076 0.924 20 O -0.546 6.546 21 C -0.162 4.162 22 C 0.141 3.859 23 N -0.478 5.478 24 C 0.128 3.872 25 H 0.380 0.620 26 H 0.119 0.881 27 H -0.253 1.253 28 H -0.248 1.248 29 H 0.151 0.849 30 H 0.402 0.598 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.113 0.887 36 H 0.086 0.914 37 H 0.108 0.892 38 H 0.382 0.618 39 H 0.107 0.893 40 H 0.083 0.917 41 H 0.161 0.839 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.134 0.330 5.561 5.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.341 6.341 2 C -0.176 4.176 3 Si 0.588 3.412 4 C -0.182 4.182 5 C -0.015 4.015 6 C -0.190 4.190 7 C 0.353 3.647 8 O -0.390 6.390 9 N -0.347 5.347 10 C 0.113 3.887 11 C -0.072 4.072 12 C -0.131 4.131 13 C -0.135 4.135 14 C -0.139 4.139 15 C -0.136 4.136 16 C -0.118 4.118 17 C -0.169 4.169 18 C 0.021 3.979 19 H 0.093 0.907 20 O -0.351 6.351 21 C -0.200 4.200 22 C -0.017 4.017 23 N -0.185 5.185 24 C -0.028 4.028 25 H 0.228 0.772 26 H 0.136 0.864 27 H -0.177 1.177 28 H -0.173 1.173 29 H 0.169 0.831 30 H 0.239 0.761 31 H 0.141 0.859 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.131 0.869 36 H 0.105 0.895 37 H 0.126 0.874 38 H 0.229 0.771 39 H 0.126 0.874 40 H 0.102 0.898 41 H 0.178 0.822 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 1.555 0.688 3.993 4.339 hybrid contribution 0.140 -0.939 0.038 0.950 sum 1.695 -0.251 4.031 4.380 Atomic orbital electron populations 1.86549 1.16644 1.81663 1.49250 1.25028 0.85581 1.10300 0.96642 0.94865 0.81178 0.77256 0.87948 1.21418 1.02090 0.95472 0.99233 1.21621 0.91780 0.93244 0.94887 1.21049 1.04574 0.95120 0.98239 1.17929 0.79187 0.86167 0.81373 1.90840 1.39822 1.64071 1.44283 1.45367 1.53784 1.11450 1.24111 1.19837 0.95704 0.80213 0.92941 1.19673 0.96332 0.94034 0.97167 1.20908 0.99939 0.93026 0.99263 1.21124 0.96771 0.99668 0.95926 1.21175 0.97114 0.96229 0.99364 1.21140 1.00066 0.93966 0.98439 1.20850 0.96225 0.99157 0.95612 1.23531 0.95858 1.03535 0.94007 1.22776 0.94799 0.83396 0.96973 0.90657 1.86512 1.92420 1.23733 1.32434 1.24091 0.98976 1.03312 0.93647 1.23020 0.92129 0.89467 0.97121 1.67710 1.19498 1.10510 1.20797 1.22851 0.91682 0.99794 0.88497 0.77215 0.86359 1.17742 1.17283 0.83136 0.76116 0.85922 0.85871 0.86070 0.86225 0.86908 0.89505 0.87386 0.77085 0.87422 0.89826 0.82232 0.82090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.06 12.84 -35.23 -0.45 -0.51 16 2 C -0.06 0.04 2.82 36.00 0.10 0.14 16 3 Si 0.69 -1.23 29.83 -169.99 -5.07 -6.31 16 4 C -0.18 -0.03 5.35 -104.54 -0.56 -0.59 16 5 C 0.01 0.02 9.38 -38.87 -0.36 -0.35 16 6 C -0.18 -0.27 5.89 -104.82 -0.62 -0.89 16 7 C 0.57 1.48 6.35 -12.33 -0.08 1.40 16 8 O -0.51 -3.19 14.92 5.32 0.08 -3.11 16 9 N -0.70 0.00 3.76 -48.85 -0.18 -0.18 16 10 C 0.20 0.03 0.92 -132.16 -0.12 -0.09 16 11 C -0.07 -0.13 4.51 -104.62 -0.47 -0.61 16 12 C -0.11 -0.15 8.94 -39.58 -0.35 -0.50 16 13 C -0.12 -0.17 10.05 -39.58 -0.40 -0.56 16 14 C -0.12 -0.22 10.05 -39.59 -0.40 -0.62 16 15 C -0.12 -0.28 10.05 -39.58 -0.40 -0.68 16 16 C -0.10 -0.26 8.64 -39.58 -0.34 -0.61 16 17 C -0.13 -0.06 6.66 -25.92 -0.17 -0.23 16 18 C 0.08 -0.15 5.28 -25.77 -0.14 -0.29 16 19 H 0.08 -0.24 8.14 -51.93 -0.42 -0.66 16 20 O -0.55 0.80 13.09 -35.23 -0.46 0.34 16 21 C -0.16 0.39 7.15 -25.77 -0.18 0.21 16 22 C 0.14 0.01 10.71 -17.13 -0.18 -0.17 16 23 N -0.48 -0.52 10.35 -12.91 -0.13 -0.66 16 24 C 0.13 -0.02 9.84 -17.47 -0.17 -0.19 16 25 H 0.38 -1.45 8.70 45.56 0.40 -1.06 16 26 H 0.12 -0.02 7.96 -51.93 -0.41 -0.44 16 27 H -0.25 -0.10 7.11 56.52 0.40 0.30 16 28 H -0.25 -0.37 7.11 56.52 0.40 0.03 16 29 H 0.15 0.39 7.74 -52.49 -0.41 -0.01 16 30 H 0.40 -0.95 6.74 -40.82 -0.28 -1.23 16 31 H 0.12 -0.10 6.29 -52.48 -0.33 -0.43 16 32 H 0.12 -0.06 8.06 -52.48 -0.42 -0.49 16 33 H 0.12 0.01 8.06 -52.49 -0.42 -0.41 16 34 H 0.12 0.10 8.06 -52.48 -0.42 -0.32 16 35 H 0.11 0.24 6.89 -52.49 -0.36 -0.12 16 36 H 0.09 0.28 7.57 -51.93 -0.39 -0.11 16 37 H 0.11 -0.08 6.02 -51.93 -0.31 -0.40 16 38 H 0.38 -2.08 9.12 45.56 0.42 -1.66 16 39 H 0.11 -0.33 7.93 -51.93 -0.41 -0.74 16 40 H 0.08 -0.29 8.09 -51.93 -0.42 -0.71 16 41 H 0.16 -0.44 6.44 -52.49 -0.34 -0.78 16 42 H 0.16 -0.42 4.91 -52.49 -0.26 -0.68 16 LS Contribution 348.28 15.07 5.25 5.25 Total: 0.00 -9.86 348.28 -9.82 -19.68 By element: Atomic # 1 Polarization: -5.91 SS G_CDS: -4.00 Total: -9.91 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -4.85 Total: -4.60 kcal Atomic # 7 Polarization: -0.52 SS G_CDS: -0.32 Total: -0.84 kcal Atomic # 8 Polarization: -2.44 SS G_CDS: -0.83 Total: -3.27 kcal Atomic # 14 Polarization: -1.23 SS G_CDS: -5.07 Total: -6.31 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -9.86 -9.82 -19.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12891110_13287814.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.687 kcal (2) G-P(sol) polarization free energy of solvation -9.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds