Wall clock time and date at job start Tue Mar 9 2021 12:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86297 * 109.46965 * 2 1 4 4 C 1.50697 * 109.46824 * 119.99523 * 2 1 3 5 5 C 1.38359 * 120.34679 * 64.72925 * 4 2 1 6 6 C 1.40025 * 118.28529 * 179.73897 * 5 4 2 7 7 C 1.47842 * 120.55707 * 180.28368 * 6 5 4 8 8 O 1.21548 * 120.00076 * 0.22940 * 7 6 5 9 9 N 1.34781 * 120.00045 * 180.22774 * 7 6 5 10 10 C 1.46502 * 120.00209 * 175.01913 * 9 7 6 11 11 C 1.50702 * 112.84787 * 65.08639 * 10 9 7 12 12 C 1.38231 * 119.99805 * 197.54741 * 11 10 9 13 13 C 1.38241 * 119.99831 * 179.77068 * 12 11 10 14 14 C 1.38232 * 119.99858 * 0.50227 * 13 12 11 15 15 C 1.38231 * 120.00216 * 359.75466 * 14 13 12 16 16 C 1.38238 * 119.99920 * 17.82402 * 11 10 9 17 17 C 1.53783 * 113.61016 * 293.89250 * 10 9 7 18 18 C 1.53781 * 87.08075 * 270.88284 * 17 10 9 19 19 H 1.09000 * 113.61315 * 219.94205 * 18 17 10 20 20 O 1.42893 * 113.61370 * 89.11818 * 18 17 10 21 21 C 1.53781 * 113.61374 * 196.28340 * 10 9 7 22 22 C 1.39527 * 118.88433 * 0.50416 * 6 5 4 23 23 N 1.31689 * 120.56209 * 359.75400 * 22 6 5 24 24 C 1.31932 * 121.88422 * 0.02562 * 23 22 6 25 25 H 0.96699 * 114.00086 * 300.00149 * 1 2 3 26 26 H 1.08996 * 109.46868 * 239.99810 * 2 1 3 27 27 H 1.48501 * 110.00126 * 178.68170 * 3 2 1 28 28 H 1.48502 * 109.99998 * 299.99758 * 3 2 1 29 29 H 1.07995 * 120.86014 * 359.97165 * 5 4 2 30 30 H 0.96998 * 119.99760 * 355.01657 * 9 7 6 31 31 H 1.08004 * 120.00112 * 0.02562 * 12 11 10 32 32 H 1.08006 * 119.99425 * 180.23147 * 13 12 11 33 33 H 1.07996 * 119.99815 * 179.71947 * 14 13 12 34 34 H 1.08003 * 120.00533 * 179.97438 * 15 14 13 35 35 H 1.07997 * 119.99989 * 0.02562 * 16 11 10 36 36 H 1.08999 * 113.61779 * 25.43272 * 17 10 9 37 37 H 1.09000 * 113.60687 * 156.25318 * 17 10 9 38 38 H 0.96704 * 114.00392 * 179.97438 * 20 18 17 39 39 H 1.08993 * 113.61309 * 203.66306 * 21 10 9 40 40 H 1.08994 * 113.61614 * 334.57047 * 21 10 9 41 41 H 1.07999 * 119.71663 * 179.77505 * 22 6 5 42 42 H 1.07994 * 119.45879 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7103 1.2305 5 6 1.6837 -2.0599 1.4086 6 6 2.1751 -2.6776 2.5652 7 6 1.9451 -4.1185 2.8033 8 8 1.3285 -4.7781 1.9896 9 7 2.4192 -4.7007 3.9226 10 6 2.0991 -6.1007 4.2121 11 6 2.6898 -7.0559 3.2073 12 6 2.2029 -8.3460 3.1109 13 6 2.7416 -9.2208 2.1859 14 6 3.7741 -8.8086 1.3645 15 6 4.2646 -7.5202 1.4645 16 6 3.7224 -6.6437 2.3858 17 6 0.6070 -6.3461 4.4922 18 6 0.9175 -6.0559 5.9701 19 1 0.3901 -6.7108 6.6638 20 8 0.8063 -4.6744 6.3178 21 6 2.3614 -6.5032 5.6729 22 6 2.8815 -1.9095 3.4913 23 7 3.0868 -0.6261 3.2791 24 6 2.6396 -0.0185 2.1968 25 1 -0.3933 0.4417 0.7650 26 1 1.7923 -0.5139 -0.8899 27 1 3.5346 1.7703 0.0321 28 1 1.5615 2.4678 -1.2085 29 1 1.1290 -2.6231 0.6729 30 1 2.9725 -4.1928 4.5364 31 1 1.3988 -8.6693 3.7555 32 1 2.3586 -10.2277 2.1082 33 1 4.1980 -9.4935 0.6450 34 1 5.0716 -7.1982 0.8230 35 1 4.1061 -5.6372 2.4645 36 1 -0.0508 -5.6092 4.0313 37 1 0.2906 -7.3721 4.3044 38 1 1.0000 -4.4856 7.2462 39 1 2.5240 -7.5723 5.8087 40 1 3.1189 -5.8930 6.1646 41 1 3.2634 -2.3715 4.3897 42 1 2.8309 1.0358 2.0623 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12891110_13287814.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:58:16 Heat of formation + Delta-G solvation = -6.043947 kcal Electronic energy + Delta-G solvation = -27941.508219 eV Core-core repulsion = 24047.578657 eV Total energy + Delta-G solvation = -3893.929562 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.34688 -41.46181 -39.66978 -39.21189 -37.94974 -36.24719 -34.47486 -33.78686 -32.79094 -31.71059 -31.67786 -27.31401 -27.06364 -26.54732 -25.05678 -23.87778 -23.51418 -22.53420 -21.68021 -20.33846 -19.33010 -18.63526 -18.18718 -17.99308 -17.71150 -17.59477 -16.80486 -16.49003 -16.44076 -15.98437 -15.86619 -15.60372 -15.33970 -15.26212 -14.71014 -14.57168 -14.41239 -14.36132 -14.26073 -13.98738 -13.60951 -13.52078 -13.24587 -12.94143 -12.74132 -12.35432 -12.24742 -12.19598 -11.95264 -11.56539 -11.26605 -11.10158 -10.95630 -10.61199 -10.59074 -10.34467 -10.09973 -9.86669 -9.59599 -5.04134 -0.58507 -0.06382 0.37690 0.45073 1.20743 1.60667 1.66542 1.86896 1.96268 2.61476 2.75728 3.06733 3.13977 3.35815 3.42157 3.45740 3.59123 3.63842 3.67087 3.69720 3.71474 3.83274 4.02419 4.06811 4.08400 4.20223 4.24395 4.35713 4.44362 4.56286 4.60218 4.68290 4.80353 4.81383 4.84413 4.89619 4.95186 4.96714 5.03146 5.11232 5.29197 5.36152 5.51598 5.57670 5.69278 6.05557 6.36979 6.61402 6.68040 6.93611 7.07481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.076 4.076 3 Si 0.787 3.213 4 C -0.176 4.176 5 C -0.004 4.004 6 C -0.196 4.196 7 C 0.566 3.434 8 O -0.560 6.560 9 N -0.681 5.681 10 C 0.189 3.811 11 C -0.078 4.078 12 C -0.122 4.122 13 C -0.125 4.125 14 C -0.134 4.134 15 C -0.135 4.135 16 C -0.119 4.119 17 C -0.141 4.141 18 C 0.090 3.910 19 H 0.095 0.905 20 O -0.564 6.564 21 C -0.147 4.147 22 C 0.148 3.852 23 N -0.491 5.491 24 C 0.131 3.869 25 H 0.397 0.603 26 H 0.109 0.891 27 H -0.276 1.276 28 H -0.293 1.293 29 H 0.132 0.868 30 H 0.414 0.586 31 H 0.143 0.857 32 H 0.142 0.858 33 H 0.135 0.865 34 H 0.126 0.874 35 H 0.110 0.890 36 H 0.051 0.949 37 H 0.116 0.884 38 H 0.399 0.601 39 H 0.119 0.881 40 H 0.099 0.901 41 H 0.188 0.812 42 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.648 0.605 7.537 7.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.185 4.185 3 Si 0.690 3.310 4 C -0.179 4.179 5 C -0.031 4.031 6 C -0.201 4.201 7 C 0.353 3.647 8 O -0.439 6.439 9 N -0.332 5.332 10 C 0.102 3.898 11 C -0.079 4.079 12 C -0.140 4.140 13 C -0.143 4.143 14 C -0.152 4.152 15 C -0.153 4.153 16 C -0.137 4.137 17 C -0.179 4.179 18 C 0.030 3.970 19 H 0.113 0.887 20 O -0.372 6.372 21 C -0.184 4.184 22 C -0.010 4.010 23 N -0.198 5.198 24 C -0.025 4.025 25 H 0.247 0.753 26 H 0.126 0.874 27 H -0.202 1.202 28 H -0.221 1.221 29 H 0.150 0.850 30 H 0.253 0.747 31 H 0.160 0.840 32 H 0.160 0.840 33 H 0.153 0.847 34 H 0.144 0.856 35 H 0.128 0.872 36 H 0.070 0.930 37 H 0.134 0.866 38 H 0.250 0.750 39 H 0.137 0.863 40 H 0.117 0.883 41 H 0.205 0.795 42 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 2.076 0.953 6.041 6.458 hybrid contribution -0.059 -1.025 -0.633 1.207 sum 2.017 -0.073 5.408 5.772 Atomic orbital electron populations 1.86510 1.17035 1.82228 1.50493 1.25293 0.85483 1.11747 0.95996 0.93745 0.78025 0.73713 0.85491 1.21452 1.02025 0.94743 0.99630 1.21613 0.92376 0.94107 0.95009 1.21039 1.05545 0.94724 0.98758 1.18141 0.78589 0.86506 0.81438 1.90809 1.42089 1.65102 1.45911 1.45273 1.52943 1.11631 1.23362 1.20058 0.95678 0.79775 0.94268 1.19932 0.95989 0.94715 0.97311 1.21207 1.00328 0.92877 0.99592 1.21446 0.96545 1.00647 0.95663 1.21429 0.97527 0.96328 0.99957 1.21356 1.00635 0.94482 0.98794 1.20974 0.97119 0.99228 0.96423 1.23610 0.95211 1.03059 0.96028 1.22707 0.95082 0.83649 0.95535 0.88749 1.86471 1.92570 1.23951 1.34236 1.24059 0.99098 1.04210 0.91078 1.23377 0.91080 0.89158 0.97396 1.67797 1.19954 1.10785 1.21274 1.23232 0.90650 1.00837 0.87816 0.75312 0.87361 1.20234 1.22090 0.85027 0.74687 0.83960 0.84025 0.84717 0.85561 0.87199 0.92999 0.86570 0.75001 0.86309 0.88255 0.79548 0.79625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.62 12.84 -148.98 -1.91 -2.54 16 2 C -0.08 0.03 2.82 71.23 0.20 0.23 16 3 Si 0.79 -3.01 29.83 68.60 2.05 -0.97 16 4 C -0.18 -0.19 5.35 -19.81 -0.11 -0.29 16 5 C 0.00 -0.02 9.38 22.73 0.21 0.19 16 6 C -0.20 -0.84 5.89 -19.99 -0.12 -0.95 16 7 C 0.57 4.02 6.35 86.78 0.55 4.57 16 8 O -0.56 -8.65 14.92 -3.87 -0.06 -8.71 16 9 N -0.68 -0.44 3.76 -426.75 -1.60 -2.05 16 10 C 0.19 0.12 0.92 3.38 0.00 0.13 16 11 C -0.08 -0.36 4.51 -19.87 -0.09 -0.45 16 12 C -0.12 -0.35 8.94 22.27 0.20 -0.16 16 13 C -0.13 -0.39 10.05 22.27 0.22 -0.17 16 14 C -0.13 -0.61 10.05 22.27 0.22 -0.38 16 15 C -0.13 -0.84 10.05 22.27 0.22 -0.62 16 16 C -0.12 -0.81 8.64 22.27 0.19 -0.62 16 17 C -0.14 -0.21 6.66 31.12 0.21 -0.01 16 18 C 0.09 -0.43 5.28 31.22 0.16 -0.27 16 19 H 0.09 -0.79 8.14 -2.39 -0.02 -0.81 16 20 O -0.56 2.21 13.09 -148.98 -1.95 0.26 16 21 C -0.15 0.92 7.15 31.22 0.22 1.14 16 22 C 0.15 0.00 10.71 85.03 0.91 0.91 16 23 N -0.49 -0.72 10.35 -194.76 -2.01 -2.74 16 24 C 0.13 -0.10 9.84 84.70 0.83 0.73 16 25 H 0.40 -2.92 8.70 -74.06 -0.64 -3.57 16 26 H 0.11 0.14 7.96 -2.39 -0.02 0.12 16 27 H -0.28 -0.04 7.11 99.48 0.71 0.67 16 28 H -0.29 -1.10 7.11 99.48 0.71 -0.39 16 29 H 0.13 1.17 7.74 -2.91 -0.02 1.15 16 30 H 0.41 -2.11 6.74 -92.71 -0.62 -2.73 16 31 H 0.14 -0.30 6.29 -2.91 -0.02 -0.31 16 32 H 0.14 -0.20 8.06 -2.91 -0.02 -0.23 16 33 H 0.13 0.10 8.06 -2.91 -0.02 0.07 16 34 H 0.13 0.44 8.06 -2.91 -0.02 0.41 16 35 H 0.11 0.68 6.89 -2.91 -0.02 0.66 16 36 H 0.05 0.46 7.57 -2.39 -0.02 0.44 16 37 H 0.12 -0.13 6.02 -2.39 -0.01 -0.14 16 38 H 0.40 -5.02 9.12 -74.05 -0.68 -5.69 16 39 H 0.12 -0.95 7.93 -2.39 -0.02 -0.97 16 40 H 0.10 -0.90 8.09 -2.39 -0.02 -0.92 16 41 H 0.19 -1.25 6.44 -2.91 -0.02 -1.27 16 42 H 0.19 -1.24 4.91 -2.91 -0.01 -1.26 16 Total: 0.00 -25.30 348.28 -2.24 -27.54 By element: Atomic # 1 Polarization: -13.98 SS G_CDS: -0.80 Total: -14.78 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: 4.06 Total: 3.98 kcal Atomic # 7 Polarization: -1.17 SS G_CDS: -3.62 Total: -4.78 kcal Atomic # 8 Polarization: -7.06 SS G_CDS: -3.92 Total: -10.98 kcal Atomic # 14 Polarization: -3.01 SS G_CDS: 2.05 Total: -0.97 kcal Total: -25.30 -2.24 -27.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12891110_13287814.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.497 kcal (2) G-P(sol) polarization free energy of solvation -25.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds