Wall clock time and date at job start Tue Mar 9 2021 13:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86309 * 109.47118 * 2 1 4 4 C 1.50697 * 109.47055 * 240.00275 * 2 1 3 5 5 C 1.31113 * 118.55023 * 120.00055 * 4 2 1 6 6 N 1.38919 * 121.85391 * 180.42425 * 5 4 2 7 7 C 1.47035 * 118.88219 * 346.68825 * 6 5 4 8 8 C 1.50703 * 109.82312 * 163.20088 * 7 6 5 9 9 O 1.21279 * 120.00024 * 340.86454 * 8 7 6 10 10 N 1.34778 * 119.99935 * 160.86103 * 8 7 6 11 11 C 1.46499 * 119.99771 * 179.97438 * 10 8 7 12 12 H 1.08992 * 109.47397 * 325.00275 * 11 10 8 13 13 C 1.53002 * 109.46799 * 85.00174 * 11 10 8 14 14 C 1.52997 * 109.46817 * 179.97438 * 13 11 10 15 15 C 1.53005 * 109.47452 * 300.00239 * 14 13 11 16 16 H 1.09000 * 109.47360 * 180.02562 * 15 14 13 17 17 O 1.42905 * 109.46812 * 300.00186 * 15 14 13 18 18 C 1.52999 * 109.47159 * 59.99536 * 15 14 13 19 19 C 1.52997 * 109.47317 * 300.00546 * 18 15 14 20 20 C 1.53542 * 107.71252 * 43.62688 * 7 6 5 21 21 C 1.50208 * 118.54570 * 300.01825 * 4 2 1 22 22 H 0.96705 * 113.99954 * 60.00048 * 1 2 3 23 23 H 1.09000 * 109.47245 * 120.00027 * 2 1 3 24 24 H 1.48495 * 109.99845 * 59.99912 * 3 2 1 25 25 H 1.48495 * 109.99718 * 181.31723 * 3 2 1 26 26 H 1.08007 * 119.07579 * 0.44868 * 5 4 2 27 27 H 0.97005 * 120.56232 * 166.70336 * 6 5 4 28 28 H 1.09000 * 109.81497 * 284.05783 * 7 6 5 29 29 H 0.97006 * 119.99662 * 0.02562 * 10 8 7 30 30 H 1.08993 * 109.47662 * 299.99952 * 13 11 10 31 31 H 1.09002 * 109.47075 * 60.00457 * 13 11 10 32 32 H 1.09002 * 109.47153 * 60.00231 * 14 13 11 33 33 H 1.09001 * 109.47289 * 180.02562 * 14 13 11 34 34 H 0.96701 * 114.00061 * 180.02562 * 17 15 14 35 35 H 1.08996 * 109.46929 * 179.97438 * 18 15 14 36 36 H 1.09002 * 109.46716 * 60.00455 * 18 15 14 37 37 H 1.09002 * 109.47153 * 299.99641 * 19 18 15 38 38 H 1.09001 * 109.46832 * 179.97438 * 19 18 15 39 39 H 1.08997 * 109.61848 * 58.80583 * 20 7 6 40 40 H 1.08994 * 109.62099 * 179.36344 * 20 7 6 41 41 H 1.08995 * 109.32947 * 280.18685 * 21 4 2 42 42 H 1.08999 * 109.32665 * 39.84154 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 2.6831 -0.0460 -2.0745 6 7 3.1759 -0.6304 -3.2344 7 6 3.1005 -2.0915 -3.3808 8 6 3.2940 -2.4710 -4.8264 9 8 3.1322 -1.6429 -5.6976 10 7 3.6469 -3.7305 -5.1511 11 6 3.8345 -4.0995 -6.5564 12 1 3.1199 -3.5550 -7.1735 13 6 5.2579 -3.7449 -6.9911 14 6 5.4540 -4.1309 -8.4586 15 6 5.2297 -5.6352 -8.6247 16 1 5.3698 -5.9102 -9.6701 17 8 6.1666 -6.3487 -7.8152 18 6 3.8063 -5.9898 -8.1899 19 6 3.6102 -5.6039 -6.7224 20 6 1.7097 -2.5373 -2.9072 21 6 1.5482 -2.1481 -1.4359 22 1 -0.3933 0.4417 -0.7651 23 1 1.7923 -0.5138 0.8900 24 1 1.5615 2.4679 1.2085 25 1 3.5345 1.7703 -0.0321 26 1 2.9264 0.9847 -1.8620 27 1 3.5636 -0.0839 -3.9359 28 1 3.8686 -2.5643 -2.7687 29 1 3.7760 -4.3929 -4.4542 30 1 5.4179 -2.6734 -6.8724 31 1 5.9726 -4.2896 -6.3740 32 1 4.7394 -3.5866 -9.0760 33 1 6.4682 -3.8787 -8.7682 34 1 6.0827 -7.3105 -7.8714 35 1 3.6464 -7.0614 -8.3087 36 1 3.0917 -5.4455 -8.8073 37 1 4.3249 -6.1481 -6.1050 38 1 2.5960 -5.8560 -6.4129 39 1 0.9437 -2.0404 -3.5025 40 1 1.6159 -3.6180 -3.0133 41 1 2.1883 -2.7831 -0.8235 42 1 0.5090 -2.2905 -1.1395 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12892148_15413834.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:04:11 Heat of formation + Delta-G solvation = -108.825127 kcal Electronic energy + Delta-G solvation = -23065.433695 eV Core-core repulsion = 19625.328812 eV Total energy + Delta-G solvation = -3440.104883 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.57081 -40.21844 -39.25998 -37.38130 -36.65579 -34.44975 -33.16051 -32.94108 -31.84490 -29.85331 -27.34771 -25.35541 -24.05508 -23.71986 -23.02464 -21.60920 -20.90497 -19.37760 -19.10586 -18.06032 -17.73741 -17.40979 -16.91370 -16.56690 -16.11099 -15.88736 -15.77360 -15.51423 -15.29186 -15.20772 -14.56053 -14.44088 -14.18312 -14.06919 -13.87125 -13.26696 -13.23419 -13.14889 -13.11463 -12.90941 -12.47507 -12.18821 -12.07191 -11.90419 -11.80697 -11.62383 -11.29618 -11.28172 -10.89371 -10.67655 -10.20095 -10.12925 -8.44791 -4.98576 1.32988 1.40000 1.47720 1.61769 1.89376 1.99030 2.63241 3.36718 3.52011 3.65692 3.70810 3.75429 3.79737 3.87437 3.99014 4.04897 4.10243 4.17997 4.33295 4.36708 4.44150 4.45812 4.50148 4.59386 4.63922 4.64704 4.78505 4.89965 4.96887 5.02834 5.05003 5.12835 5.15575 5.21068 5.23680 5.29972 5.33916 5.47779 5.58162 6.24358 6.45492 6.81090 6.91899 6.93254 7.09969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.562 6.562 2 C -0.046 4.046 3 Si 0.756 3.244 4 C -0.289 4.289 5 C 0.140 3.860 6 N -0.738 5.738 7 C 0.137 3.863 8 C 0.514 3.486 9 O -0.571 6.571 10 N -0.709 5.709 11 C 0.149 3.851 12 H 0.069 0.931 13 C -0.118 4.118 14 C -0.115 4.115 15 C 0.103 3.897 16 H 0.065 0.935 17 O -0.581 6.581 18 C -0.146 4.146 19 C -0.115 4.115 20 C -0.118 4.118 21 C -0.053 4.053 22 H 0.391 0.609 23 H 0.093 0.907 24 H -0.306 1.306 25 H -0.289 1.289 26 H 0.143 0.857 27 H 0.407 0.593 28 H 0.105 0.895 29 H 0.416 0.584 30 H 0.043 0.957 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.392 0.608 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.097 0.903 41 H 0.068 0.932 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.153 -4.872 -2.726 5.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.370 6.370 2 C -0.158 4.158 3 Si 0.664 3.336 4 C -0.299 4.299 5 C 0.019 3.981 6 N -0.370 5.370 7 C 0.028 3.972 8 C 0.300 3.700 9 O -0.450 6.450 10 N -0.361 5.361 11 C 0.044 3.956 12 H 0.087 0.913 13 C -0.157 4.157 14 C -0.153 4.153 15 C 0.045 3.955 16 H 0.083 0.917 17 O -0.389 6.389 18 C -0.185 4.185 19 C -0.153 4.153 20 C -0.156 4.156 21 C -0.090 4.090 22 H 0.241 0.759 23 H 0.111 0.889 24 H -0.235 1.235 25 H -0.217 1.217 26 H 0.160 0.840 27 H 0.244 0.756 28 H 0.122 0.878 29 H 0.253 0.747 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.241 0.759 35 H 0.106 0.894 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.081 0.919 40 H 0.116 0.884 41 H 0.086 0.914 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.478 -3.551 -2.238 4.225 hybrid contribution 0.266 -0.885 0.144 0.936 sum 0.744 -4.437 -2.094 4.962 Atomic orbital electron populations 1.86420 1.18159 1.82078 1.50315 1.24727 0.84674 1.08793 0.97616 0.94113 0.77634 0.76921 0.84937 1.20983 1.08591 0.99110 1.01219 1.20488 0.93793 0.96858 0.86948 1.44365 1.68092 1.04975 1.19578 1.21089 1.00350 0.83795 0.91948 1.20852 0.75484 0.82556 0.91140 1.90711 1.52126 1.50703 1.51465 1.45951 1.69258 1.11373 1.09495 1.20978 0.96425 0.96629 0.81562 0.91284 1.21716 0.96802 1.00036 0.97102 1.21548 1.02506 0.94779 0.96426 1.21794 0.88068 0.91769 0.93904 0.91703 1.86494 1.58584 1.24041 1.69758 1.22195 0.97133 1.03040 0.96093 1.21666 1.02887 0.92840 0.97940 1.21813 0.94128 1.02477 0.97224 1.19926 1.01963 0.92520 0.94609 0.75948 0.88912 1.23459 1.21654 0.84039 0.75618 0.87788 0.74732 0.93791 0.91395 0.90111 0.91709 0.75862 0.89358 0.90595 0.90094 0.90429 0.91936 0.88422 0.91394 0.90709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.23 12.54 -148.98 -1.87 -3.10 16 2 C -0.05 -0.05 2.83 71.24 0.20 0.15 16 3 Si 0.76 -0.10 29.68 68.60 2.04 1.93 16 4 C -0.29 -0.11 5.45 -16.76 -0.09 -0.20 16 5 C 0.14 -0.03 9.63 83.42 0.80 0.77 16 6 N -0.74 -0.59 5.47 -328.99 -1.80 -2.39 16 7 C 0.14 -0.17 3.36 44.33 0.15 -0.02 16 8 C 0.51 1.08 7.05 87.66 0.62 1.70 16 9 O -0.57 -5.89 15.75 -3.03 -0.05 -5.94 16 10 N -0.71 1.92 5.08 -442.54 -2.25 -0.33 16 11 C 0.15 -0.15 2.45 44.99 0.11 -0.04 16 12 H 0.07 0.22 7.58 -2.39 -0.02 0.21 16 13 C -0.12 -0.17 5.35 30.59 0.16 -0.01 16 14 C -0.11 0.03 5.66 30.60 0.17 0.20 16 15 C 0.10 -0.37 3.77 30.60 0.12 -0.25 16 16 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 17 O -0.58 1.31 11.97 -148.98 -1.78 -0.48 16 18 C -0.15 0.92 5.64 30.59 0.17 1.09 16 19 C -0.12 0.64 5.24 30.59 0.16 0.81 16 20 C -0.12 0.28 5.48 30.79 0.17 0.45 16 21 C -0.05 0.04 5.83 29.71 0.17 0.21 16 22 H 0.39 -2.08 8.70 -74.05 -0.64 -2.72 16 23 H 0.09 0.26 7.96 -2.39 -0.02 0.24 16 24 H -0.31 -2.44 7.11 99.48 0.71 -1.73 16 25 H -0.29 -1.25 7.10 99.48 0.71 -0.54 16 26 H 0.14 -0.45 4.36 -2.91 -0.01 -0.46 16 27 H 0.41 0.66 8.10 -92.70 -0.75 -0.09 16 28 H 0.10 -0.45 8.14 -2.39 -0.02 -0.47 16 29 H 0.42 -3.45 8.60 -92.70 -0.80 -4.25 16 30 H 0.04 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.07 0.18 7.68 -2.39 -0.02 0.16 16 32 H 0.08 -0.08 8.14 -2.39 -0.02 -0.10 16 33 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 34 H 0.39 -3.84 9.08 -74.06 -0.67 -4.51 16 35 H 0.09 -0.80 8.14 -2.39 -0.02 -0.82 16 36 H 0.08 -0.44 8.14 -2.39 -0.02 -0.46 16 37 H 0.08 -0.49 7.68 -2.39 -0.02 -0.50 16 38 H 0.08 -0.52 8.14 -2.39 -0.02 -0.54 16 39 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 40 H 0.10 -0.63 8.14 -2.39 -0.02 -0.65 16 41 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 42 H 0.07 0.05 7.82 -2.39 -0.02 0.03 16 Total: 0.00 -18.19 329.57 -4.56 -22.75 By element: Atomic # 1 Polarization: -15.55 SS G_CDS: -1.77 Total: -17.32 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: 2.92 Total: 4.86 kcal Atomic # 7 Polarization: 1.33 SS G_CDS: -4.05 Total: -2.72 kcal Atomic # 8 Polarization: -5.81 SS G_CDS: -3.70 Total: -9.51 kcal Atomic # 14 Polarization: -0.10 SS G_CDS: 2.04 Total: 1.93 kcal Total: -18.19 -4.56 -22.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12892148_15413834.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.076 kcal (2) G-P(sol) polarization free energy of solvation -18.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds