Wall clock time and date at job start Tue Mar 9 2021 13:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36543 * 126.64972 * 2 1 4 4 C 1.46655 * 125.98450 * 359.97438 * 3 2 1 5 5 O 1.21691 * 120.00310 * 359.73039 * 4 3 2 6 6 N 1.34784 * 119.99922 * 180.02562 * 4 3 2 7 7 C 1.46499 * 119.99893 * 179.72855 * 6 4 3 8 8 H 1.08990 * 109.47400 * 34.99963 * 7 6 4 9 9 C 1.52997 * 109.46833 * 155.00334 * 7 6 4 10 10 C 1.52997 * 109.47794 * 59.99608 * 9 7 6 11 11 C 1.52998 * 109.46959 * 59.99773 * 10 9 7 12 12 H 1.09007 * 109.47334 * 60.00217 * 11 10 9 13 13 O 1.42901 * 109.47486 * 180.02562 * 11 10 9 14 14 C 1.53001 * 109.47375 * 300.00553 * 11 10 9 15 15 C 1.52998 * 109.46843 * 274.99901 * 7 6 4 16 16 O 1.34913 * 108.02803 * 180.26176 * 3 2 1 17 17 C 1.33935 * 109.38326 * 359.56534 * 16 3 2 18 18 C 1.50700 * 125.61755 * 180.17378 * 17 16 3 19 19 O 1.42900 * 109.46820 * 270.30356 * 18 17 16 20 20 C 1.35900 * 117.00195 * 179.97438 * 19 18 17 21 21 C 1.38742 * 120.05116 * 359.73122 * 20 19 18 22 22 C 1.38147 * 119.94211 * 179.74248 * 21 20 19 23 23 C 1.38265 * 120.05496 * 0.50436 * 22 21 20 24 24 C 1.50701 * 119.94619 * 179.74341 * 23 22 21 25 25 O 1.42898 * 109.47396 * 245.02812 * 24 23 22 26 26 Si 1.86300 * 109.46802 * 5.02746 * 24 23 22 27 27 C 1.38267 * 120.11289 * 359.77221 * 23 22 21 28 28 C 1.38148 * 120.05508 * 359.97281 * 27 23 22 29 29 C 1.35131 * 108.76529 * 0.43695 * 17 16 3 30 30 H 1.08994 * 109.46810 * 89.99913 * 1 2 3 31 31 H 1.09002 * 109.47343 * 210.00510 * 1 2 3 32 32 H 1.09001 * 109.46887 * 330.00134 * 1 2 3 33 33 H 0.97005 * 119.99846 * 359.72643 * 6 4 3 34 34 H 1.09007 * 109.46894 * 180.02562 * 9 7 6 35 35 H 1.09002 * 109.46979 * 299.99327 * 9 7 6 36 36 H 1.08993 * 109.47831 * 179.97438 * 10 9 7 37 37 H 1.08998 * 109.47008 * 300.00346 * 10 9 7 38 38 H 0.96699 * 114.00473 * 179.97438 * 13 11 10 39 39 H 1.09002 * 109.47302 * 180.02562 * 14 11 10 40 40 H 1.09007 * 109.46838 * 299.99599 * 14 11 10 41 41 H 1.08997 * 109.47450 * 60.00399 * 15 7 6 42 42 H 1.08998 * 109.47317 * 180.02562 * 15 7 6 43 43 H 1.08997 * 109.47227 * 30.30590 * 18 17 16 44 44 H 1.09000 * 109.47273 * 150.30957 * 18 17 16 45 45 H 1.07998 * 120.02719 * 359.97438 * 21 20 19 46 46 H 1.07993 * 119.97276 * 180.23314 * 22 21 20 47 47 H 1.08999 * 109.46680 * 125.02255 * 24 23 22 48 48 H 0.96699 * 113.99702 * 179.97438 * 25 24 23 49 49 H 1.48497 * 109.99913 * 178.67941 * 26 24 23 50 50 H 1.48502 * 109.99869 * 299.99794 * 26 24 23 51 51 H 1.08003 * 119.97494 * 179.97438 * 27 23 22 52 52 H 1.08001 * 120.02738 * 179.97438 * 28 27 23 53 53 H 1.08001 * 126.44102 * 179.77301 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3220 1.0955 0.0000 4 6 1.8843 2.4952 -0.0005 5 8 0.6969 2.7614 -0.0060 6 7 2.7973 3.4868 -0.0010 7 6 2.3600 4.8850 -0.0075 8 1 1.4462 4.9826 0.5784 9 6 3.4535 5.7641 0.6026 10 6 4.7363 5.6270 -0.2198 11 6 4.4691 6.0710 -1.6594 12 1 4.1438 7.1113 -1.6643 13 8 5.6671 5.9424 -2.4278 14 6 3.3756 5.1919 -2.2696 15 6 2.0928 5.3289 -1.4471 16 8 3.6005 0.6647 -0.0059 17 6 3.6184 -0.6745 0.0000 18 6 4.8550 -1.5358 0.0000 19 8 5.2458 -1.8081 -1.3473 20 6 6.3517 -2.5776 -1.5254 21 6 7.0497 -3.0561 -0.4259 22 6 8.1705 -3.8425 -0.6096 23 6 8.6028 -4.1443 -1.8878 24 6 9.8291 -4.9977 -2.0853 25 8 10.8529 -4.2226 -2.7124 26 14 10.4353 -5.6057 -0.4320 27 6 7.9123 -3.6639 -2.9852 28 6 6.7878 -2.8814 -2.8068 29 6 2.3448 -1.1262 0.0000 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 3.7438 3.2746 0.0030 34 1 3.1280 6.8044 0.5981 35 1 3.6439 5.4478 1.6282 36 1 5.5152 6.2536 0.2146 37 1 5.0616 4.5867 -0.2150 38 1 5.5712 6.2067 -3.3530 39 1 3.1855 5.5079 -3.2953 40 1 3.7009 4.1515 -2.2647 41 1 1.3138 4.7027 -1.8818 42 1 1.7679 6.3694 -1.4521 43 1 5.6618 -1.0131 0.5138 44 1 4.6446 -2.4738 0.5138 45 1 6.7149 -2.8170 0.5726 46 1 8.7119 -4.2184 0.2458 47 1 9.5804 -5.8503 -2.7171 48 1 11.6734 -4.7092 -2.8703 49 1 11.6255 -6.4745 -0.6156 50 1 10.7776 -4.4526 0.4389 51 1 8.2522 -3.9006 -3.9826 52 1 6.2490 -2.5061 -3.6643 53 1 2.0306 -2.1595 0.0006 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12892148_4549632.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:04:44 Heat of formation + Delta-G solvation = -112.358412 kcal Electronic energy + Delta-G solvation = -35745.947507 eV Core-core repulsion = 30937.082614 eV Total energy + Delta-G solvation = -4808.864893 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.181 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -43.96221 -41.37849 -41.22674 -39.55386 -39.16287 -37.38403 -37.11592 -35.35494 -34.16139 -33.19650 -32.07300 -31.95012 -31.64641 -30.12425 -28.87292 -27.95375 -26.17256 -24.30053 -23.84200 -23.55596 -22.88771 -22.58494 -22.13352 -20.93353 -20.30112 -19.48245 -19.43477 -18.54871 -18.27684 -17.79673 -17.50158 -17.15109 -16.85393 -16.81131 -16.77570 -16.28132 -15.94145 -15.71021 -15.60083 -15.34855 -15.11860 -14.81506 -14.68291 -14.47916 -14.37564 -14.12294 -14.08595 -14.03276 -13.98421 -13.92949 -13.70687 -13.62409 -13.37289 -13.33328 -12.90366 -12.80839 -12.47995 -12.28878 -12.25163 -12.21481 -11.87955 -11.83060 -11.72241 -11.33637 -11.26305 -10.84049 -10.81074 -10.46943 -10.32311 -10.03996 -9.73259 -9.24118 -4.92277 -0.28175 0.26254 0.30727 0.95230 1.31899 1.34920 1.60739 1.93189 1.95457 1.98384 2.35951 2.60945 3.19060 3.27248 3.44073 3.55646 3.62646 3.64359 3.66793 3.73730 3.82966 3.95705 3.97552 3.99769 4.01443 4.07656 4.13849 4.27778 4.29236 4.29531 4.37614 4.40489 4.42234 4.44692 4.47451 4.54444 4.58953 4.69088 4.71272 4.80768 4.90445 4.95519 4.96828 4.98241 5.03142 5.05247 5.08352 5.15492 5.18739 5.24240 5.24638 5.29561 5.39899 5.50559 5.66495 5.68028 6.27233 6.27686 6.60209 6.81115 6.87986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.095 4.095 3 C -0.097 4.097 4 C 0.602 3.398 5 O -0.543 6.543 6 N -0.704 5.704 7 C 0.141 3.859 8 H 0.089 0.911 9 C -0.116 4.116 10 C -0.117 4.117 11 C 0.104 3.896 12 H 0.071 0.929 13 O -0.589 6.589 14 C -0.146 4.146 15 C -0.125 4.125 16 O -0.164 6.164 17 C 0.009 3.991 18 C 0.135 3.865 19 O -0.326 6.326 20 C 0.125 3.875 21 C -0.202 4.202 22 C -0.081 4.081 23 C -0.123 4.123 24 C -0.083 4.083 25 O -0.560 6.560 26 Si 0.765 3.235 27 C -0.061 4.061 28 C -0.162 4.162 29 C -0.184 4.184 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.409 0.591 34 H 0.102 0.898 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.058 0.942 38 H 0.393 0.607 39 H 0.073 0.927 40 H 0.052 0.948 41 H 0.053 0.947 42 H 0.095 0.905 43 H 0.099 0.901 44 H 0.134 0.866 45 H 0.160 0.840 46 H 0.146 0.854 47 H 0.094 0.906 48 H 0.394 0.606 49 H -0.289 1.289 50 H -0.297 1.297 51 H 0.137 0.863 52 H 0.134 0.866 53 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.709 -2.913 2.171 3.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.098 4.098 3 C -0.149 4.149 4 C 0.389 3.611 5 O -0.423 6.423 6 N -0.355 5.355 7 C 0.037 3.963 8 H 0.107 0.893 9 C -0.153 4.153 10 C -0.154 4.154 11 C 0.046 3.954 12 H 0.089 0.911 13 O -0.398 6.398 14 C -0.184 4.184 15 C -0.164 4.164 16 O -0.061 6.061 17 C -0.043 4.043 18 C 0.061 3.939 19 O -0.241 6.241 20 C 0.080 3.920 21 C -0.220 4.220 22 C -0.098 4.098 23 C -0.123 4.123 24 C -0.192 4.192 25 O -0.370 6.370 26 Si 0.671 3.329 27 C -0.079 4.079 28 C -0.181 4.181 29 C -0.203 4.203 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.091 0.909 33 H 0.246 0.754 34 H 0.121 0.879 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.077 0.923 38 H 0.242 0.758 39 H 0.092 0.908 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.113 0.887 43 H 0.117 0.883 44 H 0.152 0.848 45 H 0.178 0.822 46 H 0.163 0.837 47 H 0.112 0.888 48 H 0.244 0.756 49 H -0.217 1.217 50 H -0.224 1.224 51 H 0.155 0.845 52 H 0.152 0.848 53 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 0.426 -2.163 3.190 3.877 hybrid contribution 1.121 0.248 -1.550 1.929 sum 1.547 -1.915 1.640 2.958 Atomic orbital electron populations 1.20450 0.87278 1.04055 1.03224 1.20989 0.98495 0.91221 0.99059 1.21950 0.81673 0.95104 1.16166 1.16611 0.85672 0.82275 0.76516 1.90844 1.16628 1.82702 1.52085 1.46056 1.09900 1.06167 1.73404 1.21176 0.98931 0.79050 0.97114 0.89328 1.21778 0.92927 1.01187 0.99431 1.21506 0.98413 1.01952 0.93562 1.21889 0.83834 0.98408 0.91319 0.91131 1.86480 1.35502 1.90512 1.27278 1.22193 0.95608 1.00542 1.00050 1.21855 0.97095 1.02916 0.94535 1.83970 1.28261 1.22741 1.71126 1.22434 0.97047 0.80233 1.04614 1.21270 0.91621 0.98283 0.82736 1.86106 1.42253 1.66488 1.29240 1.19078 0.86557 0.91711 0.94672 1.21455 0.98396 1.03087 0.99051 1.21031 0.96044 0.96230 0.96493 1.19424 0.96982 1.02160 0.93738 1.24982 0.88630 0.96213 1.09346 1.86554 1.26810 1.42482 1.81177 0.94204 0.84133 0.79248 0.75359 1.20959 0.92837 0.94635 0.99504 1.20637 0.99133 1.02879 0.95457 1.21903 0.90731 1.01308 1.06383 0.90540 0.89133 0.90949 0.75381 0.87924 0.89690 0.90435 0.92286 0.75756 0.90822 0.92925 0.92796 0.88692 0.88304 0.84818 0.82213 0.83686 0.88849 0.75593 1.21675 1.22450 0.84513 0.84819 0.79692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.34 9.81 71.24 0.70 0.36 16 2 C -0.09 -0.54 6.20 -19.74 -0.12 -0.66 16 3 C -0.10 -0.72 7.13 24.07 0.17 -0.55 16 4 C 0.60 4.85 7.75 86.44 0.67 5.52 16 5 O -0.54 -6.93 14.40 -4.32 -0.06 -6.99 16 6 N -0.70 -1.92 4.23 -446.54 -1.89 -3.81 16 7 C 0.14 -0.01 2.78 44.99 0.13 0.12 16 8 H 0.09 0.18 7.58 -2.39 -0.02 0.16 16 9 C -0.12 0.49 5.61 30.59 0.17 0.66 16 10 C -0.12 0.19 5.40 30.59 0.17 0.36 16 11 C 0.10 -0.11 3.47 30.59 0.11 -0.01 16 12 H 0.07 -0.25 8.14 -2.38 -0.02 -0.27 16 13 O -0.59 -1.24 13.32 -148.98 -1.98 -3.23 16 14 C -0.15 0.05 5.39 30.60 0.16 0.21 16 15 C -0.13 0.02 5.60 30.59 0.17 0.19 16 16 O -0.16 -0.94 10.40 -5.07 -0.05 -0.99 16 17 C 0.01 0.02 6.94 24.97 0.17 0.19 16 18 C 0.13 -0.39 5.27 71.24 0.38 -0.02 16 19 O -0.33 -1.01 10.12 -92.43 -0.94 -1.95 16 20 C 0.12 0.33 6.69 22.51 0.15 0.48 16 21 C -0.20 0.22 9.04 22.37 0.20 0.42 16 22 C -0.08 0.02 8.66 22.25 0.19 0.21 16 23 C -0.12 -0.24 5.39 -19.85 -0.11 -0.35 16 24 C -0.08 0.07 2.79 71.24 0.20 0.27 16 25 O -0.56 -1.32 12.81 -148.98 -1.91 -3.23 16 26 Si 0.76 -2.09 29.85 68.60 2.05 -0.04 16 27 C -0.06 -0.18 9.68 22.26 0.22 0.03 16 28 C -0.16 -0.60 9.99 22.37 0.22 -0.38 16 29 C -0.18 -0.29 10.73 22.07 0.24 -0.06 16 30 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.09 -0.07 8.14 -2.39 -0.02 -0.09 16 32 H 0.07 0.52 6.45 -2.39 -0.02 0.50 16 33 H 0.41 0.42 6.62 -92.70 -0.61 -0.19 16 34 H 0.10 -0.72 8.14 -2.38 -0.02 -0.74 16 35 H 0.08 -0.41 8.14 -2.39 -0.02 -0.43 16 36 H 0.08 -0.11 8.14 -2.39 -0.02 -0.13 16 37 H 0.06 0.00 6.51 -2.39 -0.02 -0.01 16 38 H 0.39 -2.01 9.08 -74.06 -0.67 -2.69 16 39 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 40 H 0.05 0.18 7.60 -2.38 -0.02 0.17 16 41 H 0.05 0.24 8.14 -2.39 -0.02 0.22 16 42 H 0.09 -0.34 8.14 -2.39 -0.02 -0.36 16 43 H 0.10 -0.55 7.65 -2.39 -0.02 -0.57 16 44 H 0.13 -1.25 7.68 -2.39 -0.02 -1.27 16 45 H 0.16 -1.17 6.30 -2.91 -0.02 -1.19 16 46 H 0.15 -0.59 4.86 -2.91 -0.01 -0.61 16 47 H 0.09 -0.44 7.96 -2.39 -0.02 -0.46 16 48 H 0.39 -2.21 8.74 -74.06 -0.65 -2.86 16 49 H -0.29 -0.52 7.11 99.48 0.71 0.19 16 50 H -0.30 -1.22 7.05 99.48 0.70 -0.52 16 51 H 0.14 0.13 8.06 -2.91 -0.02 0.11 16 52 H 0.13 0.35 8.06 -2.91 -0.02 0.33 16 53 H 0.19 -0.76 8.06 -2.91 -0.02 -0.79 16 Total: 0.00 -23.08 428.06 -1.53 -24.61 By element: Atomic # 1 Polarization: -10.46 SS G_CDS: -0.93 Total: -11.38 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: 4.18 Total: 7.01 kcal Atomic # 7 Polarization: -1.92 SS G_CDS: -1.89 Total: -3.81 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: -4.94 Total: -16.39 kcal Atomic # 14 Polarization: -2.09 SS G_CDS: 2.05 Total: -0.04 kcal Total: -23.08 -1.53 -24.61 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12892148_4549632.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.748 kcal (2) G-P(sol) polarization free energy of solvation -23.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds