Wall clock time and date at job start Tue Mar 9 2021 13:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86300 * 109.47190 * 2 1 4 4 C 1.50697 * 109.47590 * 239.99812 * 2 1 3 5 5 C 1.38271 * 119.94391 * 119.72423 * 4 2 1 6 6 C 1.38148 * 120.05274 * 179.72564 * 5 4 2 7 7 C 1.38730 * 119.94378 * 0.57432 * 6 5 4 8 8 O 1.35900 * 120.05580 * 179.67764 * 7 6 5 9 9 C 1.42902 * 117.00003 * 0.02570 * 8 7 6 10 10 C 1.50696 * 109.47499 * 179.97438 * 9 8 7 11 11 C 1.36417 * 125.80333 * 89.70842 * 10 9 8 12 12 C 1.47379 * 127.18934 * 0.02562 * 11 10 9 13 13 O 1.21616 * 120.00285 * 359.97438 * 12 11 10 14 14 N 1.34780 * 120.00039 * 179.97438 * 12 11 10 15 15 C 1.46499 * 120.00340 * 179.97438 * 14 12 11 16 16 H 1.08998 * 109.46806 * 34.99704 * 15 14 12 17 17 C 1.52999 * 109.47323 * 155.00290 * 15 14 12 18 18 C 1.52995 * 109.47143 * 59.99471 * 17 15 14 19 19 C 1.52998 * 109.47156 * 60.00453 * 18 17 15 20 20 H 1.09003 * 109.47000 * 59.99689 * 19 18 17 21 21 O 1.42901 * 109.47444 * 179.97438 * 19 18 17 22 22 C 1.53004 * 109.47224 * 299.99848 * 19 18 17 23 23 C 1.52998 * 109.46664 * 275.00082 * 15 14 12 24 24 C 1.47016 * 105.61620 * 179.87256 * 11 10 9 25 25 C 1.34182 * 105.95468 * 0.39325 * 24 11 10 26 26 O 1.33651 * 125.79922 * 270.02832 * 10 9 8 27 27 C 1.38736 * 119.88967 * 359.70253 * 7 6 5 28 28 C 1.38141 * 119.94155 * 359.97438 * 27 7 6 29 29 H 0.96695 * 114.00385 * 300.00492 * 1 2 3 30 30 H 1.09001 * 109.47255 * 120.00067 * 2 1 3 31 31 H 1.48506 * 110.00048 * 300.00131 * 3 2 1 32 32 H 1.48502 * 109.99996 * 61.31456 * 3 2 1 33 33 H 1.07996 * 119.97091 * 359.97438 * 5 4 2 34 34 H 1.07997 * 120.02526 * 180.29633 * 6 5 4 35 35 H 1.08999 * 109.46924 * 299.99564 * 9 8 7 36 36 H 1.08995 * 109.47129 * 59.99295 * 9 8 7 37 37 H 0.97009 * 119.99907 * 0.02562 * 14 12 11 38 38 H 1.08996 * 109.46910 * 180.02562 * 17 15 14 39 39 H 1.09002 * 109.46776 * 299.99772 * 17 15 14 40 40 H 1.09007 * 109.47082 * 179.97438 * 18 17 15 41 41 H 1.08996 * 109.47651 * 300.00077 * 18 17 15 42 42 H 0.96703 * 113.99941 * 180.02562 * 21 19 18 43 43 H 1.09002 * 109.47276 * 179.97438 * 22 19 18 44 44 H 1.08996 * 109.46624 * 299.99789 * 22 19 18 45 45 H 1.09003 * 109.47837 * 60.00162 * 23 15 14 46 46 H 1.09003 * 109.46722 * 179.97438 * 23 15 14 47 47 H 1.08008 * 127.02565 * 180.18812 * 24 11 10 48 48 H 1.07994 * 125.43748 * 179.72012 * 25 24 11 49 49 H 1.07995 * 120.02461 * 179.97438 * 27 7 6 50 50 H 1.07999 * 119.96989 * 180.02562 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 2.7216 -0.0357 -2.1426 6 6 3.1881 -0.6863 -3.2684 7 6 2.8533 -2.0144 -3.4893 8 8 3.3056 -2.6548 -4.5994 9 6 4.1221 -1.8996 -5.4966 10 6 4.5267 -2.7682 -6.6597 11 6 3.8348 -2.9128 -7.8264 12 6 2.5650 -2.2621 -8.1956 13 8 2.0229 -1.5011 -7.4172 14 7 2.0045 -2.5105 -9.3959 15 6 0.7420 -1.8641 -9.7627 16 1 0.7131 -0.8588 -9.3425 17 6 0.6343 -1.7834 -11.2867 18 6 0.6750 -3.1946 -11.8763 19 6 -0.4952 -4.0116 -11.3250 20 1 -1.4345 -3.5307 -11.5979 21 8 -0.4575 -5.3296 -11.8761 22 6 -0.3875 -4.0924 -9.8009 23 6 -0.4281 -2.6812 -9.2113 24 6 4.6224 -3.8504 -8.6401 25 6 5.6882 -4.1804 -7.8946 26 8 5.6214 -3.5325 -6.7210 27 6 2.0556 -2.6875 -2.5754 28 6 1.5971 -2.0343 -1.4478 29 1 -0.3934 0.4417 0.7649 30 1 1.7923 -0.5138 0.8900 31 1 1.5614 2.4679 -1.2085 32 1 1.5878 2.4586 1.2242 33 1 2.9776 0.9997 -1.9728 34 1 3.8092 -0.1603 -3.9782 35 1 3.5607 -1.0400 -5.8627 36 1 5.0140 -1.5549 -4.9734 37 1 2.4368 -3.1178 -10.0167 38 1 -0.3048 -1.3021 -11.5595 39 1 1.4680 -1.2013 -11.6795 40 1 0.5978 -3.1371 -12.9622 41 1 1.6143 -3.6755 -11.6035 42 1 -1.1723 -5.9045 -11.5700 43 1 -1.2215 -4.6741 -9.4081 44 1 0.5518 -4.5733 -9.5281 45 1 -0.3515 -2.7388 -8.1255 46 1 -1.3675 -2.2001 -9.4838 47 1 4.3890 -4.2041 -9.6335 48 1 6.4738 -4.8594 -8.1912 49 1 1.7932 -3.7212 -2.7454 50 1 0.9764 -2.5580 -0.7358 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12892148_4549634.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:04:49 Heat of formation + Delta-G solvation = -109.414989 kcal Electronic energy + Delta-G solvation = -34262.569026 eV Core-core repulsion = 29609.369389 eV Total energy + Delta-G solvation = -4653.199637 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.165 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -43.73713 -41.32512 -41.24149 -39.49930 -39.15702 -37.40400 -37.01348 -34.54426 -33.65940 -32.87714 -32.01332 -31.93307 -31.49991 -29.92951 -27.86279 -26.16751 -24.93195 -23.84200 -23.81655 -23.24720 -22.42145 -22.17906 -21.09523 -20.23202 -19.51372 -19.27064 -18.55322 -18.24030 -17.72534 -17.28112 -17.10985 -16.92231 -16.81903 -16.77982 -16.44753 -15.98626 -15.73866 -15.69091 -15.46331 -15.23686 -14.78092 -14.68637 -14.52320 -14.27614 -14.16717 -14.08692 -14.00315 -13.85312 -13.81728 -13.42050 -13.32082 -13.15552 -12.86552 -12.54017 -12.28294 -12.22112 -12.16376 -11.94620 -11.80598 -11.77625 -11.24978 -11.16697 -10.99267 -10.79702 -10.49528 -10.18092 -10.07358 -9.84638 -9.24704 -4.94052 -0.05431 0.23947 0.27516 1.01192 1.30230 1.49791 1.58957 1.94684 2.05237 2.11328 2.45414 2.58782 3.21105 3.32234 3.40289 3.54111 3.63438 3.66386 3.68774 3.72562 3.79660 3.91169 3.94663 3.99753 4.01252 4.09669 4.15780 4.26242 4.31792 4.38929 4.39572 4.42939 4.44118 4.44734 4.54471 4.61634 4.65337 4.78481 4.82685 4.92763 4.95391 4.99499 5.06011 5.09835 5.12416 5.22106 5.23227 5.24389 5.26885 5.44242 5.46002 5.65633 5.86595 6.23460 6.41313 6.60379 6.82382 7.08659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C -0.081 4.081 3 Si 0.762 3.238 4 C -0.123 4.123 5 C -0.078 4.078 6 C -0.205 4.205 7 C 0.124 3.876 8 O -0.322 6.322 9 C 0.135 3.865 10 C 0.042 3.958 11 C -0.225 4.225 12 C 0.583 3.417 13 O -0.571 6.571 14 N -0.701 5.701 15 C 0.143 3.857 16 H 0.078 0.922 17 C -0.115 4.115 18 C -0.114 4.114 19 C 0.105 3.895 20 H 0.065 0.935 21 O -0.586 6.586 22 C -0.144 4.144 23 C -0.126 4.126 24 C -0.200 4.200 25 C -0.009 4.009 26 O -0.175 6.175 27 C -0.163 4.163 28 C -0.059 4.059 29 H 0.394 0.606 30 H 0.097 0.903 31 H -0.302 1.302 32 H -0.284 1.284 33 H 0.148 0.852 34 H 0.150 0.850 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.410 0.590 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.393 0.607 43 H 0.069 0.931 44 H 0.059 0.941 45 H 0.045 0.955 46 H 0.087 0.913 47 H 0.187 0.813 48 H 0.253 0.747 49 H 0.134 0.866 50 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.623 -0.912 -2.451 4.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.370 6.370 2 C -0.189 4.189 3 Si 0.667 3.333 4 C -0.124 4.124 5 C -0.095 4.095 6 C -0.223 4.223 7 C 0.079 3.921 8 O -0.236 6.236 9 C 0.061 3.939 10 C -0.011 4.011 11 C -0.230 4.230 12 C 0.371 3.629 13 O -0.452 6.452 14 N -0.353 5.353 15 C 0.039 3.961 16 H 0.097 0.903 17 C -0.153 4.153 18 C -0.152 4.152 19 C 0.046 3.954 20 H 0.083 0.917 21 O -0.395 6.395 22 C -0.181 4.181 23 C -0.165 4.165 24 C -0.219 4.219 25 C -0.075 4.075 26 O -0.071 6.071 27 C -0.182 4.182 28 C -0.077 4.077 29 H 0.245 0.755 30 H 0.115 0.885 31 H -0.229 1.229 32 H -0.211 1.211 33 H 0.165 0.835 34 H 0.167 0.833 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.248 0.752 38 H 0.114 0.886 39 H 0.105 0.895 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.242 0.758 43 H 0.088 0.912 44 H 0.078 0.922 45 H 0.064 0.936 46 H 0.106 0.894 47 H 0.204 0.796 48 H 0.269 0.731 49 H 0.152 0.848 50 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.818 0.156 -2.614 4.630 hybrid contribution -1.658 -0.642 0.400 1.822 sum 2.160 -0.486 -2.214 3.131 Atomic orbital electron populations 1.86551 1.18707 1.80643 1.51061 1.24950 0.83905 1.11694 0.98351 0.94249 0.90388 0.72259 0.76377 1.19441 1.00912 0.94710 0.97305 1.20974 0.96193 0.99778 0.92601 1.21391 1.06167 0.93794 1.00951 1.19153 0.94722 0.91860 0.86332 1.86046 1.65335 1.40601 1.31662 1.21146 0.95485 0.91182 0.86125 1.22044 0.87043 0.95956 0.96096 1.21412 0.98462 1.05804 0.97283 1.17451 0.83244 0.80264 0.81902 1.90777 1.64608 1.38434 1.51393 1.45829 1.24484 1.48132 1.16888 1.21045 0.82412 0.96513 0.96112 0.90348 1.21764 1.04939 0.96871 0.91731 1.21492 0.97903 0.94451 1.01328 1.21861 0.99025 0.83394 0.91104 0.91696 1.86468 1.56333 1.24536 1.72134 1.22169 1.02565 0.97046 0.96364 1.21838 0.99009 0.95954 0.99710 1.23215 0.95486 1.00506 1.02683 1.24901 1.01984 0.98412 0.82168 1.83794 1.38844 1.46752 1.37684 1.20623 1.01198 1.01493 0.94848 1.20949 0.96719 0.93988 0.96009 0.75513 0.88498 1.22941 1.21078 0.83485 0.83273 0.87666 0.87799 0.75191 0.88587 0.89493 0.90339 0.91390 0.75781 0.91229 0.92220 0.93607 0.89410 0.79600 0.73107 0.84769 0.84148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.43 12.74 -148.98 -1.90 -4.33 16 2 C -0.08 -0.12 2.81 71.23 0.20 0.08 16 3 Si 0.76 -0.22 29.78 68.60 2.04 1.82 16 4 C -0.12 -0.69 5.42 -19.85 -0.11 -0.80 16 5 C -0.08 -0.35 8.66 22.26 0.19 -0.16 16 6 C -0.20 -1.19 9.04 22.37 0.20 -0.99 16 7 C 0.12 1.16 6.69 22.51 0.15 1.31 16 8 O -0.32 -3.47 10.12 -92.42 -0.94 -4.40 16 9 C 0.13 0.83 4.73 71.23 0.34 1.16 16 10 C 0.04 0.26 7.00 25.26 0.18 0.44 16 11 C -0.22 -1.19 6.31 -18.99 -0.12 -1.31 16 12 C 0.58 4.48 7.78 86.65 0.67 5.16 16 13 O -0.57 -8.33 14.51 -4.08 -0.06 -8.39 16 14 N -0.70 -0.84 4.23 -445.84 -1.89 -2.72 16 15 C 0.14 0.05 2.78 44.99 0.13 0.18 16 16 H 0.08 0.31 7.58 -2.39 -0.02 0.29 16 17 C -0.12 0.54 5.61 30.59 0.17 0.72 16 18 C -0.11 0.41 5.40 30.59 0.17 0.58 16 19 C 0.10 -0.23 3.47 30.59 0.11 -0.12 16 20 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 21 O -0.59 -0.12 13.32 -148.98 -1.98 -2.10 16 22 C -0.14 0.11 5.39 30.60 0.16 0.27 16 23 C -0.13 -0.14 5.60 30.59 0.17 0.03 16 24 C -0.20 0.38 10.60 23.65 0.25 0.63 16 25 C -0.01 0.03 12.03 66.89 0.80 0.83 16 26 O -0.18 -0.60 10.52 4.46 0.05 -0.56 16 27 C -0.16 -1.39 9.99 22.37 0.22 -1.17 16 28 C -0.06 -0.39 9.60 22.25 0.21 -0.18 16 29 H 0.39 -1.61 8.74 -74.06 -0.65 -2.26 16 30 H 0.10 -0.28 7.96 -2.39 -0.02 -0.30 16 31 H -0.30 -2.26 7.11 99.48 0.71 -1.55 16 32 H -0.28 -0.93 7.11 99.48 0.71 -0.23 16 33 H 0.15 -0.03 4.87 -2.91 -0.01 -0.04 16 34 H 0.15 0.20 6.30 -2.91 -0.02 0.18 16 35 H 0.11 0.79 6.02 -2.39 -0.01 0.78 16 36 H 0.10 0.08 7.66 -2.39 -0.02 0.06 16 37 H 0.41 -1.29 6.04 -92.70 -0.56 -1.85 16 38 H 0.10 -0.63 8.14 -2.39 -0.02 -0.65 16 39 H 0.09 -0.50 8.14 -2.39 -0.02 -0.52 16 40 H 0.08 -0.26 8.14 -2.38 -0.02 -0.28 16 41 H 0.07 -0.26 6.50 -2.39 -0.02 -0.27 16 42 H 0.39 -2.58 9.08 -74.05 -0.67 -3.25 16 43 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 44 H 0.06 0.10 7.60 -2.39 -0.02 0.08 16 45 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 46 H 0.09 -0.13 8.14 -2.39 -0.02 -0.15 16 47 H 0.19 -1.52 7.74 -2.91 -0.02 -1.55 16 48 H 0.25 -3.14 8.06 -2.91 -0.02 -3.16 16 49 H 0.13 0.93 8.06 -2.91 -0.02 0.90 16 50 H 0.14 0.55 8.06 -2.91 -0.02 0.53 16 Total: 0.00 -25.92 405.64 -1.40 -27.32 By element: Atomic # 1 Polarization: -12.47 SS G_CDS: -0.83 Total: -13.30 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: 4.10 Total: 6.66 kcal Atomic # 7 Polarization: -0.84 SS G_CDS: -1.89 Total: -2.72 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -4.83 Total: -19.78 kcal Atomic # 14 Polarization: -0.22 SS G_CDS: 2.04 Total: 1.82 kcal Total: -25.92 -1.40 -27.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12892148_4549634.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.095 kcal (2) G-P(sol) polarization free energy of solvation -25.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds