Wall clock time and date at job start Tue Mar 9 2021 13:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35987 * 117.00413 * 2 1 4 4 C 1.39153 * 120.07144 * 179.97438 * 3 2 1 5 5 O 1.35992 * 120.07296 * 359.97438 * 4 3 2 6 6 C 1.42907 * 117.00005 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47118 * 180.02562 * 6 5 4 8 8 O 1.21280 * 119.99840 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99667 * 180.02562 * 7 6 5 10 10 C 1.46502 * 119.99831 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.47138 * 34.99358 * 10 9 7 12 12 C 1.52997 * 109.47375 * 154.99585 * 10 9 7 13 13 C 1.52997 * 109.47028 * 59.99604 * 12 10 9 14 14 C 1.53005 * 109.46804 * 60.00500 * 13 12 10 15 15 H 1.08997 * 109.47090 * 60.00197 * 14 13 12 16 16 O 1.42900 * 109.46720 * 179.97438 * 14 13 12 17 17 C 1.52997 * 109.46920 * 299.99567 * 14 13 12 18 18 C 1.52995 * 109.47109 * 60.00193 * 17 14 13 19 19 C 1.38563 * 119.85224 * 180.02562 * 4 3 2 20 20 C 1.38245 * 120.00301 * 359.72280 * 19 4 3 21 21 C 1.38261 * 120.14178 * 0.54753 * 20 19 4 22 22 C 1.50699 * 119.92538 * 179.72723 * 21 20 19 23 23 O 1.42892 * 109.47249 * 119.73101 * 22 21 20 24 24 Si 1.86298 * 109.47032 * 359.72486 * 22 21 20 25 25 C 1.38242 * 120.14400 * 359.45608 * 21 20 19 26 26 H 1.08995 * 109.47739 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46938 * 300.00589 * 1 2 3 28 28 H 1.09000 * 109.46817 * 59.99582 * 1 2 3 29 29 H 1.09000 * 109.46820 * 300.00532 * 6 5 4 30 30 H 1.08998 * 109.47063 * 60.00104 * 6 5 4 31 31 H 0.97005 * 120.00512 * 359.97438 * 9 7 6 32 32 H 1.08998 * 109.47469 * 180.02562 * 12 10 9 33 33 H 1.09003 * 109.47220 * 300.00100 * 12 10 9 34 34 H 1.09007 * 109.47302 * 179.97438 * 13 12 10 35 35 H 1.08996 * 109.47647 * 300.00163 * 13 12 10 36 36 H 0.96703 * 114.00010 * 179.97438 * 16 14 13 37 37 H 1.09007 * 109.46879 * 180.02562 * 17 14 13 38 38 H 1.09005 * 109.46935 * 300.00167 * 17 14 13 39 39 H 1.09000 * 109.47078 * 179.97438 * 18 17 14 40 40 H 1.09004 * 109.46720 * 60.00133 * 18 17 14 41 41 H 1.08005 * 120.00453 * 179.97438 * 19 4 3 42 42 H 1.07999 * 119.93162 * 180.27366 * 20 19 4 43 43 H 1.09004 * 109.46453 * 239.73169 * 22 21 20 44 44 H 0.96703 * 114.00176 * 299.99748 * 23 22 21 45 45 H 1.48506 * 109.99834 * 58.68765 * 24 22 21 46 46 H 1.48502 * 110.00011 * 180.02562 * 24 22 21 47 47 H 1.08001 * 119.99775 * 180.25292 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2116 0.0000 4 6 3.4360 1.2861 0.0005 5 8 4.1795 0.1474 0.0016 6 6 5.6003 0.3002 0.0027 7 6 6.2518 -1.0587 0.0031 8 8 5.5667 -2.0595 0.0030 9 7 7.5956 -1.1617 0.0046 10 6 8.2289 -2.4828 0.0056 11 1 7.6274 -3.1745 -0.5843 12 6 9.6288 -2.3777 -0.6025 13 6 10.4730 -1.4068 0.2254 14 6 10.5786 -1.9207 1.6627 15 1 11.0498 -2.9036 1.6634 16 8 11.3675 -1.0142 2.4359 17 6 9.1786 -2.0258 2.2709 18 6 8.3344 -2.9966 1.4429 19 6 4.0604 2.5230 0.0011 20 6 3.3032 3.6796 -0.0047 21 6 1.9226 3.6056 0.0004 22 6 1.1020 4.8696 0.0002 23 8 0.2781 4.9025 -1.1668 24 14 2.2370 6.3469 0.0011 25 6 1.2934 2.3747 -0.0001 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 5.9073 0.8497 -0.8873 30 1 5.9059 0.8503 0.8927 31 1 8.1435 -0.3612 0.0051 32 1 10.0999 -3.3607 -0.6022 33 1 9.5537 -2.0116 -1.6265 34 1 11.4706 -1.3323 -0.2076 35 1 10.0019 -0.4239 0.2247 36 1 11.4766 -1.2773 3.3600 37 1 9.2539 -2.3915 3.2950 38 1 8.7075 -1.0428 2.2701 39 1 7.3372 -3.0718 1.8764 40 1 8.8057 -3.9796 1.4437 41 1 5.1388 2.5837 0.0019 42 1 3.7911 4.6431 -0.0088 43 1 0.4729 4.8943 0.8901 44 1 0.7722 4.8830 -1.9978 45 1 3.1221 6.3080 -1.1908 46 1 1.4399 7.5998 0.0016 47 1 0.2148 2.3197 -0.0002 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12892148_60476.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:05:26 Heat of formation + Delta-G solvation = -158.834477 kcal Electronic energy + Delta-G solvation = -29653.827055 eV Core-core repulsion = 25383.162849 eV Total energy + Delta-G solvation = -4270.664206 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 338.165 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.82662 -41.28492 -39.88916 -39.03980 -38.83929 -37.10881 -36.89041 -34.14893 -32.07988 -32.01722 -31.47029 -30.51407 -28.86985 -28.35970 -26.20714 -23.91728 -23.86263 -23.22479 -22.58379 -21.95921 -20.35278 -19.75319 -18.67510 -18.42534 -18.30739 -17.98762 -17.53478 -17.11926 -16.90675 -16.68140 -16.40829 -16.15582 -15.88876 -15.80908 -15.65126 -15.47890 -15.17321 -14.68618 -14.61662 -14.30251 -14.16116 -14.05203 -13.73398 -13.54790 -13.46457 -13.41765 -12.96432 -12.61658 -12.54864 -12.35733 -12.32045 -12.18231 -12.14573 -12.00262 -11.85661 -11.65860 -11.34950 -10.87460 -10.84281 -10.64032 -10.15140 -9.77849 -8.85275 -4.98463 0.17707 0.30007 1.25873 1.46386 1.53345 1.57431 1.94025 2.32114 2.55080 2.56947 3.05582 3.32870 3.43782 3.55380 3.55871 3.62354 3.77325 3.79074 3.90325 3.91319 3.93773 3.94929 4.06139 4.12448 4.21259 4.26273 4.26577 4.29218 4.34642 4.38002 4.48002 4.52792 4.57765 4.65252 4.69479 4.87107 4.92975 4.94004 4.99453 5.00286 5.10526 5.11067 5.19843 5.36777 5.39660 5.55818 5.97025 6.34731 6.37597 6.55227 6.59654 7.13441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.302 6.302 3 C 0.107 3.893 4 C 0.105 3.895 5 O -0.276 6.276 6 C 0.038 3.962 7 C 0.516 3.484 8 O -0.509 6.509 9 N -0.722 5.722 10 C 0.146 3.854 11 H 0.095 0.905 12 C -0.126 4.126 13 C -0.114 4.114 14 C 0.103 3.897 15 H 0.057 0.943 16 O -0.569 6.569 17 C -0.150 4.150 18 C -0.131 4.131 19 C -0.170 4.170 20 C -0.113 4.113 21 C -0.114 4.114 22 C -0.072 4.072 23 O -0.530 6.530 24 Si 0.686 3.314 25 C -0.146 4.146 26 H 0.103 0.897 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.401 0.599 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.380 0.620 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.139 0.861 42 H 0.133 0.867 43 H 0.118 0.882 44 H 0.376 0.624 45 H -0.259 1.259 46 H -0.257 1.257 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.370 1.705 1.678 4.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.215 6.215 3 C 0.061 3.939 4 C 0.059 3.941 5 O -0.189 6.189 6 C -0.041 4.041 7 C 0.301 3.699 8 O -0.382 6.382 9 N -0.377 5.377 10 C 0.042 3.958 11 H 0.113 0.887 12 C -0.164 4.164 13 C -0.152 4.152 14 C 0.044 3.956 15 H 0.075 0.925 16 O -0.375 6.375 17 C -0.188 4.188 18 C -0.169 4.169 19 C -0.188 4.188 20 C -0.131 4.131 21 C -0.114 4.114 22 C -0.182 4.182 23 O -0.337 6.337 24 Si 0.587 3.413 25 C -0.165 4.165 26 H 0.121 0.879 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.237 0.763 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.227 0.773 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.157 0.843 42 H 0.150 0.850 43 H 0.136 0.864 44 H 0.224 0.776 45 H -0.184 1.184 46 H -0.182 1.182 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.669 1.609 1.119 4.160 hybrid contribution -0.184 -0.032 -0.483 0.518 sum 3.485 1.578 0.636 3.878 Atomic orbital electron populations 1.23129 0.78123 1.04393 1.01368 1.86247 1.21326 1.25345 1.88546 1.18279 0.89015 0.85566 1.01070 1.18285 0.88313 0.85788 1.01733 1.86279 1.16055 1.27720 1.88824 1.22493 0.81270 0.96428 1.03942 1.20009 0.82533 0.90500 0.76881 1.90793 1.62620 1.37966 1.46864 1.45959 1.05742 1.09744 1.76301 1.21004 0.93613 0.84337 0.96860 0.88735 1.21825 0.93760 1.01201 0.99573 1.21483 1.01124 0.99209 0.93390 1.21840 0.89944 0.92433 0.91388 0.92489 1.86506 1.73382 1.51593 1.26021 1.22245 0.96174 1.00819 0.99593 1.21899 1.01077 0.99009 0.94954 1.20994 1.00472 0.90680 1.06703 1.20691 0.92848 0.97890 1.01638 1.19985 0.93701 0.95092 1.02660 1.25008 1.00235 1.01805 0.91176 1.86592 1.35615 1.95715 1.15744 0.94990 0.80377 0.76385 0.89560 1.20934 1.00401 0.90394 1.04795 0.87881 0.92508 0.92539 0.88876 0.88784 0.76344 0.89682 0.90241 0.90527 0.91385 0.77252 0.91485 0.91125 0.90745 0.90517 0.84306 0.85002 0.86374 0.77601 1.18420 1.18238 0.84166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.01 9.81 101.05 0.99 1.00 16 2 O -0.30 -1.34 10.28 -34.21 -0.35 -1.69 16 3 C 0.11 0.36 6.70 -39.12 -0.26 0.10 16 4 C 0.10 0.29 6.70 -39.12 -0.26 0.03 16 5 O -0.28 -1.11 9.45 -47.34 -0.45 -1.56 16 6 C 0.04 -0.02 5.22 36.00 0.19 0.17 16 7 C 0.52 0.85 7.87 -10.99 -0.09 0.76 16 8 O -0.51 -3.39 16.16 -14.35 -0.23 -3.62 16 9 N -0.72 1.10 4.23 -53.81 -0.23 0.87 16 10 C 0.15 -0.18 2.78 -67.93 -0.19 -0.37 16 11 H 0.09 0.05 7.58 -51.93 -0.39 -0.34 16 12 C -0.13 0.37 5.61 -26.73 -0.15 0.22 16 13 C -0.11 0.27 5.40 -26.73 -0.14 0.13 16 14 C 0.10 -0.18 3.47 -26.73 -0.09 -0.27 16 15 H 0.06 -0.12 8.14 -51.93 -0.42 -0.54 16 16 O -0.57 0.27 13.32 -35.23 -0.47 -0.20 16 17 C -0.15 0.28 5.39 -26.73 -0.14 0.13 16 18 C -0.13 0.14 5.60 -26.73 -0.15 -0.01 16 19 C -0.17 0.03 9.04 -39.46 -0.36 -0.33 16 20 C -0.11 0.06 8.66 -39.57 -0.34 -0.28 16 21 C -0.11 -0.05 5.39 -104.61 -0.56 -0.61 16 22 C -0.07 0.02 2.82 36.01 0.10 0.13 16 23 O -0.53 -0.58 12.77 -35.23 -0.45 -1.03 16 24 Si 0.69 -0.86 29.78 -169.99 -5.06 -5.93 16 25 C -0.15 -0.23 8.60 -39.46 -0.34 -0.57 16 26 H 0.10 -0.09 8.14 -51.93 -0.42 -0.52 16 27 H 0.06 -0.05 7.66 -51.93 -0.40 -0.44 16 28 H 0.06 -0.03 7.66 -51.93 -0.40 -0.43 16 29 H 0.09 -0.29 7.66 -51.93 -0.40 -0.69 16 30 H 0.09 -0.30 7.66 -51.93 -0.40 -0.69 16 31 H 0.40 -1.59 6.87 -40.82 -0.28 -1.87 16 32 H 0.08 -0.29 8.14 -51.93 -0.42 -0.71 16 33 H 0.08 -0.26 8.14 -51.93 -0.42 -0.68 16 34 H 0.08 -0.14 8.14 -51.93 -0.42 -0.56 16 35 H 0.07 -0.19 6.50 -51.93 -0.34 -0.52 16 36 H 0.38 -1.49 9.08 45.56 0.41 -1.08 16 37 H 0.07 -0.14 8.14 -51.93 -0.42 -0.56 16 38 H 0.07 -0.09 7.60 -51.93 -0.39 -0.49 16 39 H 0.07 0.08 8.14 -51.93 -0.42 -0.34 16 40 H 0.08 -0.14 8.14 -51.93 -0.42 -0.57 16 41 H 0.14 -0.44 6.30 -52.48 -0.33 -0.78 16 42 H 0.13 -0.35 4.87 -52.49 -0.26 -0.60 16 43 H 0.12 -0.12 7.96 -51.93 -0.41 -0.54 16 44 H 0.38 -0.60 8.70 45.56 0.40 -0.21 16 45 H -0.26 -0.14 7.11 56.52 0.40 0.26 16 46 H -0.26 -0.55 7.11 56.52 0.40 -0.15 16 47 H 0.14 0.08 6.30 -52.49 -0.33 -0.25 16 LS Contribution 376.82 15.07 5.68 5.68 Total: 0.00 -11.09 376.82 -9.46 -20.55 By element: Atomic # 1 Polarization: -7.20 SS G_CDS: -6.10 Total: -13.30 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -1.80 Total: 0.23 kcal Atomic # 7 Polarization: 1.10 SS G_CDS: -0.23 Total: 0.87 kcal Atomic # 8 Polarization: -6.15 SS G_CDS: -1.95 Total: -8.10 kcal Atomic # 14 Polarization: -0.86 SS G_CDS: -5.06 Total: -5.93 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -11.09 -9.46 -20.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12892148_60476.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.282 kcal (2) G-P(sol) polarization free energy of solvation -11.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds