Wall clock time and date at job start Tue Mar 9 2021 13:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42907 * 114.00069 * 2 1 4 4 H 1.08995 * 112.84741 * 341.20078 * 3 2 1 5 5 C 1.53781 * 113.60933 * 112.50134 * 3 2 1 6 6 C 1.53784 * 87.07845 * 89.11930 * 5 3 2 7 7 H 1.09003 * 113.68603 * 270.86693 * 6 5 3 8 8 C 1.52998 * 113.61276 * 139.97888 * 6 5 3 9 9 N 1.46502 * 109.47261 * 87.50380 * 8 6 5 10 10 C 1.34775 * 120.00142 * 179.97438 * 9 8 6 11 11 O 1.21551 * 120.00128 * 359.97438 * 10 9 8 12 12 C 1.47848 * 119.99984 * 179.97438 * 10 9 8 13 13 C 1.39541 * 120.14107 * 0.02562 * 12 10 9 14 14 C 1.38073 * 119.84306 * 179.97438 * 13 12 10 15 15 Br 1.89100 * 119.93864 * 180.02562 * 14 13 12 16 16 C 1.38424 * 120.12429 * 0.02562 * 14 13 12 17 17 C 1.38365 * 120.28088 * 359.97438 * 16 14 13 18 18 C 1.50699 * 119.91852 * 179.97438 * 17 16 14 19 19 O 1.42903 * 109.47152 * 245.00373 * 18 17 16 20 20 Si 1.86305 * 109.47184 * 4.99845 * 18 17 16 21 21 C 1.37938 * 120.16079 * 0.25921 * 17 16 14 22 22 C 1.53778 * 87.08263 * 25.43185 * 6 5 3 23 23 H 1.09003 * 109.46828 * 59.99754 * 1 2 3 24 24 H 1.08996 * 109.47292 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47155 * 299.99888 * 1 2 3 26 26 H 1.08994 * 113.62085 * 334.57124 * 5 3 2 27 27 H 1.09009 * 113.61156 * 203.66160 * 5 3 2 28 28 H 1.08994 * 109.47474 * 327.50143 * 8 6 5 29 29 H 1.09006 * 109.47354 * 207.49721 * 8 6 5 30 30 H 0.97005 * 119.99813 * 359.97438 * 9 8 6 31 31 H 1.07999 * 120.07716 * 359.97438 * 13 12 10 32 32 H 1.08002 * 119.85752 * 179.97438 * 16 14 13 33 33 H 1.08997 * 109.47198 * 125.00051 * 18 17 16 34 34 H 0.96700 * 114.00311 * 180.02562 * 19 18 17 35 35 H 1.48497 * 110.00233 * 300.00062 * 20 18 17 36 36 H 1.48492 * 109.99800 * 61.32455 * 20 18 17 37 37 H 1.07997 * 120.06534 * 179.72327 * 21 17 16 38 38 H 1.09000 * 113.61733 * 89.11772 * 22 6 5 39 39 H 1.09004 * 113.60985 * 219.93988 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3137 2.0789 -0.3237 5 6 2.7534 1.6488 1.3018 6 6 4.0061 1.0330 0.6565 7 1 4.1097 -0.0372 0.8354 8 6 5.2909 1.8112 0.9475 9 7 5.8763 1.3352 2.2033 10 6 7.0205 1.8796 2.6624 11 8 7.5670 2.7652 2.0344 12 6 7.6110 1.3996 3.9301 13 6 6.9863 0.3828 4.6532 14 6 7.5434 -0.0611 5.8360 15 35 6.6996 -1.4395 6.8178 16 6 8.7184 0.5009 6.3045 17 6 9.3421 1.5095 5.5916 18 6 10.6208 2.1161 6.1095 19 8 10.3980 3.4889 6.4379 20 14 11.1729 1.1951 7.6320 21 6 8.7932 1.9652 4.4110 22 6 3.3756 1.3720 -0.7045 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 2.3927 1.0963 2.1693 27 1 2.8389 2.7198 1.4863 28 1 5.0610 2.8731 1.0334 29 1 6.0007 1.6576 0.1347 30 1 5.4403 0.6282 2.7044 31 1 6.0693 -0.0560 4.2886 32 1 9.1502 0.1507 7.2304 33 1 11.3925 2.0465 5.3429 34 1 11.1804 3.9439 6.7782 35 1 10.1293 1.2824 8.6848 36 1 11.4387 -0.2269 7.2969 37 1 9.2790 2.7556 3.8581 38 1 3.6311 2.3671 -1.0685 39 1 3.5182 0.5964 -1.4570 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12896214_12335870.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:06:56 Heat of formation + Delta-G solvation = -47.832606 kcal Electronic energy + Delta-G solvation = -22859.625848 eV Core-core repulsion = 19202.396664 eV Total energy + Delta-G solvation = -3657.229184 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.046 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.70821 -40.71286 -39.88551 -37.66383 -37.37453 -35.48862 -33.80638 -33.32870 -30.64115 -29.39155 -27.43627 -27.03578 -26.68671 -25.32555 -23.42560 -22.80440 -21.63557 -20.45061 -19.07505 -18.47928 -17.87577 -17.78156 -17.26822 -16.73859 -16.53090 -16.50640 -16.15112 -16.01912 -15.41008 -15.28754 -14.94549 -14.83618 -14.47994 -14.37068 -14.22060 -13.88110 -13.63483 -13.38386 -12.90629 -12.80180 -12.53851 -12.48164 -12.19374 -11.98003 -11.91010 -11.73577 -11.60708 -11.33302 -11.10254 -10.58425 -10.49826 -10.36248 -10.17100 -10.03881 -4.99717 -0.67416 -0.29596 0.24448 1.20859 1.40188 1.61312 1.87634 1.91995 2.34335 2.70123 3.08980 3.22394 3.50612 3.55503 3.62232 3.65065 3.73944 3.75835 3.83006 3.89296 4.04469 4.18643 4.23279 4.32212 4.45216 4.51293 4.52535 4.58743 4.60658 4.70255 4.75808 4.80027 4.83063 4.86171 4.94811 5.03399 5.11785 5.20540 5.24623 5.37739 6.25678 6.27656 6.85458 6.94456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.393 6.393 3 C 0.054 3.946 4 H 0.086 0.914 5 C -0.151 4.151 6 C -0.110 4.110 7 H 0.100 0.900 8 C 0.130 3.870 9 N -0.709 5.709 10 C 0.560 3.440 11 O -0.569 6.569 12 C -0.132 4.132 13 C -0.046 4.046 14 C -0.100 4.100 15 Br -0.028 7.028 16 C -0.082 4.082 17 C -0.084 4.084 18 C -0.082 4.082 19 O -0.563 6.563 20 Si 0.770 3.230 21 C -0.025 4.025 22 C -0.130 4.130 23 H 0.050 0.950 24 H 0.093 0.907 25 H 0.049 0.951 26 H 0.073 0.927 27 H 0.099 0.901 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.413 0.587 31 H 0.165 0.835 32 H 0.134 0.866 33 H 0.101 0.899 34 H 0.407 0.593 35 H -0.289 1.289 36 H -0.281 1.281 37 H 0.143 0.857 38 H 0.108 0.892 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.067 -0.121 0.818 0.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.312 6.312 3 C -0.004 4.004 4 H 0.104 0.896 5 C -0.189 4.189 6 C -0.128 4.128 7 H 0.118 0.882 8 C 0.007 3.993 9 N -0.361 5.361 10 C 0.348 3.652 11 O -0.449 6.449 12 C -0.136 4.136 13 C -0.066 4.066 14 C -0.180 4.180 15 Br 0.057 6.943 16 C -0.101 4.101 17 C -0.085 4.085 18 C -0.191 4.191 19 O -0.373 6.373 20 Si 0.675 3.325 21 C -0.045 4.045 22 C -0.168 4.168 23 H 0.069 0.931 24 H 0.111 0.889 25 H 0.067 0.933 26 H 0.092 0.908 27 H 0.118 0.882 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.250 0.750 31 H 0.182 0.818 32 H 0.151 0.849 33 H 0.119 0.881 34 H 0.259 0.741 35 H -0.216 1.216 36 H -0.208 1.208 37 H 0.160 0.840 38 H 0.127 0.873 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.688 -0.981 1.057 1.598 hybrid contribution -0.580 0.100 -0.412 0.719 sum -1.268 -0.881 0.645 1.673 Atomic orbital electron populations 1.22957 0.79642 1.03656 1.00791 1.87838 1.21159 1.27436 1.94731 1.23166 0.94900 0.85162 0.97128 0.89630 1.23573 0.95650 1.01871 0.97767 1.22674 0.92055 1.00286 0.97810 0.88176 1.21489 0.94335 0.98591 0.84867 1.45852 1.24370 1.40338 1.25518 1.18208 0.80930 0.81597 0.84512 1.90794 1.62549 1.31951 1.59591 1.19974 0.97821 0.99517 0.96319 1.21462 0.99412 0.93944 0.91779 1.21707 0.98266 0.99764 0.98232 1.96829 1.78952 1.45935 1.72558 1.21234 0.93992 0.95939 0.98969 1.19622 0.97531 0.96349 0.94960 1.24857 0.95500 0.89065 1.09712 1.86443 1.41882 1.21448 1.87529 0.94091 0.85251 0.77663 0.75483 1.21333 0.92909 0.96337 0.93884 1.23217 0.93774 1.03598 0.96170 0.93140 0.88896 0.93263 0.90787 0.88239 0.91175 0.91563 0.74973 0.81792 0.84893 0.88084 0.74124 1.21603 1.20791 0.83953 0.87322 0.90636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.06 10.85 113.37 1.23 1.17 16 2 O -0.39 -0.85 10.63 -148.98 -1.58 -2.44 16 3 C 0.05 -0.09 4.38 31.12 0.14 0.04 16 4 H 0.09 -0.32 7.87 -2.39 -0.02 -0.34 16 5 C -0.15 0.48 7.46 31.12 0.23 0.72 16 6 C -0.11 0.32 3.69 -10.27 -0.04 0.28 16 7 H 0.10 -0.23 8.14 -2.39 -0.02 -0.25 16 8 C 0.13 -0.04 5.51 86.38 0.48 0.44 16 9 N -0.71 -0.23 5.51 -465.97 -2.57 -2.80 16 10 C 0.56 3.74 7.77 86.79 0.67 4.41 16 11 O -0.57 -8.16 16.35 -3.88 -0.06 -8.22 16 12 C -0.13 -0.63 5.87 -20.09 -0.12 -0.74 16 13 C -0.05 -0.05 9.28 22.55 0.21 0.15 16 14 C -0.10 -0.34 6.22 22.27 0.14 -0.20 16 15 Br -0.03 -0.07 33.69 -20.37 -0.69 -0.75 16 16 C -0.08 -0.38 8.40 22.34 0.19 -0.19 16 17 C -0.08 -0.36 5.38 -19.91 -0.11 -0.47 16 18 C -0.08 0.09 2.79 71.24 0.20 0.28 16 19 O -0.56 0.27 12.80 -148.98 -1.91 -1.64 16 20 Si 0.77 -2.27 29.84 68.60 2.05 -0.23 16 21 C -0.03 -0.15 9.22 22.53 0.21 0.06 16 22 C -0.13 0.36 7.47 31.12 0.23 0.59 16 23 H 0.05 -0.19 8.14 -2.39 -0.02 -0.21 16 24 H 0.09 -0.35 8.14 -2.39 -0.02 -0.37 16 25 H 0.05 -0.18 8.14 -2.39 -0.02 -0.20 16 26 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 27 H 0.10 -0.44 7.90 -2.38 -0.02 -0.46 16 28 H 0.07 0.06 7.84 -2.39 -0.02 0.04 16 29 H 0.07 0.11 8.14 -2.38 -0.02 0.09 16 30 H 0.41 -1.94 6.51 -92.70 -0.60 -2.54 16 31 H 0.16 -0.77 6.40 -2.91 -0.02 -0.79 16 32 H 0.13 0.54 4.85 -2.91 -0.01 0.53 16 33 H 0.10 -0.51 7.96 -2.39 -0.02 -0.53 16 34 H 0.41 -4.56 8.74 -74.06 -0.65 -5.20 16 35 H -0.29 -1.15 7.05 99.48 0.70 -0.45 16 36 H -0.28 -0.58 7.11 99.48 0.71 0.13 16 37 H 0.14 1.01 7.65 -2.91 -0.02 0.98 16 38 H 0.11 -0.56 8.10 -2.39 -0.02 -0.57 16 39 H 0.07 -0.09 8.14 -2.39 -0.02 -0.11 16 Total: 0.00 -18.77 348.09 -1.23 -20.00 By element: Atomic # 1 Polarization: -10.33 SS G_CDS: -0.13 Total: -10.46 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: 3.66 Total: 6.54 kcal Atomic # 7 Polarization: -0.23 SS G_CDS: -2.57 Total: -2.80 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: -3.55 Total: -12.30 kcal Atomic # 14 Polarization: -2.27 SS G_CDS: 2.05 Total: -0.23 kcal Atomic # 35 Polarization: -0.07 SS G_CDS: -0.69 Total: -0.75 kcal Total: -18.77 -1.23 -20.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12896214_12335870.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.835 kcal (2) G-P(sol) polarization free energy of solvation -18.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds