Wall clock time and date at job start Tue Mar 9 2021 13:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35887 * 116.99964 * 2 1 4 4 C 1.38815 * 119.93585 * 180.02562 * 3 2 1 5 5 C 1.37923 * 120.06739 * 179.97438 * 4 3 2 6 6 C 1.39357 * 119.93450 * 359.97438 * 5 4 3 7 7 C 1.48403 * 120.06737 * 179.97438 * 6 5 4 8 8 N 1.31625 * 126.03776 * 325.32398 * 7 6 5 9 9 N 1.40068 * 108.10936 * 180.12314 * 8 7 6 10 10 C 1.46504 * 125.92873 * 179.85171 * 9 8 7 11 11 C 1.50701 * 109.47396 * 304.69609 * 10 9 8 12 12 O 1.21280 * 119.99781 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99622 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99622 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47212 * 179.97438 * 14 13 11 16 16 H 1.09006 * 112.85138 * 43.80167 * 15 14 13 17 17 C 1.53785 * 113.61712 * 272.49768 * 15 14 13 18 18 C 1.53782 * 87.08069 * 220.01782 * 17 15 14 19 19 H 1.09000 * 113.60871 * 139.98313 * 18 17 15 20 20 O 1.42894 * 113.61201 * 270.87909 * 18 17 15 21 21 C 1.42901 * 114.00205 * 247.50139 * 20 18 17 22 22 C 1.53781 * 113.61559 * 174.99892 * 15 14 13 23 23 C 1.35036 * 108.14212 * 359.59550 * 9 8 7 24 24 C 1.35090 * 107.98028 * 0.24011 * 23 9 8 25 25 C 1.50699 * 126.08086 * 180.02562 * 24 23 9 26 26 O 1.42890 * 109.47043 * 254.97752 * 25 24 23 27 27 Si 1.86306 * 109.46620 * 14.97398 * 25 24 23 28 28 C 1.39361 * 119.86820 * 0.25231 * 6 5 4 29 29 C 1.37922 * 119.93726 * 359.47273 * 28 6 5 30 30 H 1.09006 * 109.47311 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47377 * 300.00336 * 1 2 3 32 32 H 1.09001 * 109.46803 * 60.00248 * 1 2 3 33 33 H 1.08000 * 119.96916 * 359.97305 * 4 3 2 34 34 H 1.08002 * 120.03819 * 180.02562 * 5 4 3 35 35 H 1.09001 * 109.46891 * 184.69267 * 10 9 8 36 36 H 1.09002 * 109.46910 * 64.69571 * 10 9 8 37 37 H 0.96996 * 120.00772 * 359.97438 * 13 11 10 38 38 H 1.09002 * 109.47068 * 299.99729 * 14 13 11 39 39 H 1.09001 * 109.47372 * 59.99816 * 14 13 11 40 40 H 1.08998 * 113.61167 * 334.56695 * 17 15 14 41 41 H 1.08998 * 113.61682 * 105.46547 * 17 15 14 42 42 H 1.08997 * 109.47136 * 60.00008 * 21 20 18 43 43 H 1.08999 * 109.47374 * 180.02562 * 21 20 18 44 44 H 1.09004 * 109.46951 * 300.00077 * 21 20 18 45 45 H 1.09003 * 113.61181 * 254.52982 * 22 15 14 46 46 H 1.08994 * 113.61519 * 25.43167 * 22 15 14 47 47 H 1.07998 * 126.00980 * 180.20263 * 23 9 8 48 48 H 1.09000 * 109.46852 * 134.97174 * 25 24 23 49 49 H 0.96701 * 114.00163 * 59.99831 * 26 25 24 50 50 H 1.48505 * 109.99754 * 58.68376 * 27 25 24 51 51 H 1.48493 * 109.99929 * 179.97438 * 27 25 24 52 52 H 1.07999 * 120.02933 * 179.74591 * 28 6 5 53 53 H 1.07993 * 119.96881 * 180.25237 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 3.4322 1.2819 -0.0005 5 6 4.0612 2.5093 -0.0011 6 6 3.3035 3.6790 -0.0016 7 6 3.9772 5.0013 -0.0016 8 7 5.1084 5.2940 0.6043 9 7 5.3961 6.6431 0.3612 10 6 6.5641 7.3758 0.8565 11 6 6.6318 7.2580 2.3573 12 8 5.7873 6.6247 2.9546 13 7 7.6303 7.8572 3.0359 14 6 7.6958 7.7431 4.4950 15 6 8.9156 8.5082 5.0121 16 1 9.0364 9.4824 4.5382 17 6 10.2042 7.6691 5.0367 18 6 10.5238 8.3429 6.3817 19 1 10.9530 7.6643 7.1188 20 8 11.2603 9.5604 6.2511 21 6 12.5942 9.4901 6.7590 22 6 9.0094 8.5536 6.5464 23 6 4.4130 7.1497 -0.4136 24 6 3.5224 6.1631 -0.6553 25 6 2.2659 6.2838 -1.4785 26 8 1.1307 6.3257 -0.6117 27 14 2.3335 7.8476 -2.4890 28 6 1.9119 3.6044 0.0037 29 6 1.2885 2.3742 -0.0015 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 4.0189 0.3751 -0.0005 34 1 5.1398 2.5641 -0.0019 35 1 6.4790 8.4262 0.5779 36 1 7.4693 6.9558 0.4178 37 1 8.3055 8.3639 2.5583 38 1 6.7904 8.1631 4.9333 39 1 7.7810 6.6928 4.7739 40 1 10.0255 6.5969 5.1171 41 1 10.9064 7.9238 4.2430 42 1 13.1476 8.7202 6.2213 43 1 13.0859 10.4533 6.6232 44 1 12.5663 9.2433 7.8203 45 1 8.7471 9.5225 6.9713 46 1 8.5041 7.7232 7.0395 47 1 4.3495 8.1651 -0.7757 48 1 2.1836 5.4244 -2.1439 49 1 1.1372 7.0668 0.0095 50 1 3.5276 7.8304 -3.3719 51 1 1.1004 7.9781 -3.3059 52 1 1.3222 4.5092 0.0075 53 1 0.2101 2.3158 -0.0015 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12896214_12622750.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:07:21 Heat of formation + Delta-G solvation = -5.674622 kcal Electronic energy + Delta-G solvation = -35195.386372 eV Core-core repulsion = 30423.440387 eV Total energy + Delta-G solvation = -4771.945985 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.188 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -42.45618 -41.10358 -40.92182 -40.19595 -38.47791 -37.67335 -37.32428 -35.26876 -34.55144 -32.23927 -32.02942 -31.22774 -29.80710 -28.49763 -27.86068 -27.25911 -26.65214 -25.77712 -24.06405 -23.69223 -23.33026 -21.87960 -21.45092 -21.00533 -20.40717 -19.17835 -18.76522 -18.30261 -17.56654 -17.29839 -17.11349 -17.00086 -16.71257 -16.67522 -16.56098 -16.34982 -16.21982 -16.02728 -15.52205 -15.40812 -15.25705 -15.07577 -14.88321 -14.54426 -14.42848 -14.33234 -14.08089 -14.03648 -13.87353 -13.68473 -13.38641 -13.27041 -13.01868 -12.86285 -12.81255 -12.50417 -12.42855 -12.17627 -12.11773 -11.87781 -11.83759 -11.66802 -11.48465 -11.28446 -11.07813 -10.49477 -10.45049 -10.23336 -10.14404 -10.05324 -9.61887 -8.94996 -4.94980 0.05097 0.32933 0.86945 1.33292 1.46130 1.52160 1.66712 1.80467 2.08084 2.14442 2.30047 2.70421 2.78277 3.38002 3.51069 3.57688 3.58941 3.70715 3.75830 3.77377 3.87253 3.87903 3.90276 4.00156 4.16524 4.21585 4.25707 4.26233 4.33523 4.34891 4.35812 4.42645 4.52728 4.53894 4.56400 4.57239 4.62683 4.69869 4.74333 4.76179 4.78753 4.84467 4.87442 4.88412 5.05573 5.06080 5.08266 5.17153 5.26664 5.32485 5.44924 5.52976 5.57757 5.70387 5.97354 6.26023 6.35895 6.48756 6.65490 6.88917 7.18768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.335 6.335 3 C 0.124 3.876 4 C -0.168 4.168 5 C -0.063 4.063 6 C -0.073 4.073 7 C 0.115 3.885 8 N -0.299 5.299 9 N -0.360 5.360 10 C 0.110 3.890 11 C 0.494 3.506 12 O -0.567 6.567 13 N -0.711 5.711 14 C 0.135 3.865 15 C -0.103 4.103 16 H 0.107 0.893 17 C -0.150 4.150 18 C 0.054 3.946 19 H 0.082 0.918 20 O -0.390 6.390 21 C 0.025 3.975 22 C -0.134 4.134 23 C 0.080 3.920 24 C -0.271 4.271 25 C -0.041 4.041 26 O -0.554 6.554 27 Si 0.802 3.198 28 C -0.065 4.065 29 C -0.213 4.213 30 H 0.119 0.881 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.140 0.860 34 H 0.129 0.871 35 H 0.182 0.818 36 H 0.138 0.862 37 H 0.420 0.580 38 H 0.058 0.942 39 H 0.055 0.945 40 H 0.093 0.907 41 H 0.077 0.923 42 H 0.049 0.951 43 H 0.094 0.906 44 H 0.048 0.952 45 H 0.076 0.924 46 H 0.102 0.898 47 H 0.229 0.771 48 H 0.092 0.908 49 H 0.394 0.606 50 H -0.281 1.281 51 H -0.302 1.302 52 H 0.165 0.835 53 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.153 8.199 -0.132 9.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.248 6.248 3 C 0.078 3.922 4 C -0.187 4.187 5 C -0.082 4.082 6 C -0.076 4.076 7 C -0.050 4.050 8 N -0.120 5.120 9 N -0.142 5.142 10 C -0.013 4.013 11 C 0.279 3.721 12 O -0.445 6.445 13 N -0.365 5.365 14 C 0.011 3.989 15 C -0.122 4.122 16 H 0.125 0.875 17 C -0.187 4.187 18 C -0.004 4.004 19 H 0.100 0.900 20 O -0.309 6.309 21 C -0.071 4.071 22 C -0.172 4.172 23 C -0.065 4.065 24 C -0.282 4.282 25 C -0.150 4.150 26 O -0.363 6.363 27 Si 0.707 3.293 28 C -0.083 4.083 29 C -0.232 4.232 30 H 0.137 0.863 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.158 0.842 34 H 0.147 0.853 35 H 0.200 0.800 36 H 0.156 0.844 37 H 0.257 0.743 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.111 0.889 41 H 0.096 0.904 42 H 0.068 0.932 43 H 0.113 0.887 44 H 0.067 0.933 45 H 0.094 0.906 46 H 0.120 0.880 47 H 0.245 0.755 48 H 0.109 0.891 49 H 0.244 0.756 50 H -0.208 1.208 51 H -0.230 1.230 52 H 0.182 0.818 53 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 4.522 7.210 -0.097 8.512 hybrid contribution -0.162 -0.745 -0.211 0.791 sum 4.360 6.466 -0.308 7.804 Atomic orbital electron populations 1.23360 0.76364 1.05634 1.02345 1.86045 1.23552 1.26842 1.88399 1.19336 0.92569 0.84798 0.95533 1.20490 0.91851 0.98718 1.07636 1.21077 0.99975 0.90891 0.96293 1.17948 0.93161 0.89589 1.06868 1.20726 0.93248 0.94172 0.96883 1.77685 1.17475 0.94125 1.22735 1.48129 1.19803 1.07175 1.39071 1.21988 0.88119 1.00763 0.90465 1.21109 0.81407 0.78818 0.90731 1.90826 1.40935 1.41748 1.70989 1.45783 1.28798 1.54078 1.07886 1.21293 0.98202 0.99804 0.79613 1.22643 0.93150 0.99723 0.96678 0.87500 1.23538 0.97359 0.99657 0.98158 1.23155 0.92859 0.86612 0.97819 0.90033 1.87830 1.26427 1.33871 1.82807 1.22960 0.82438 1.03432 0.98232 1.23225 0.94598 1.03642 0.95717 1.22899 0.88126 1.00855 0.94661 1.20636 1.02786 0.93301 1.11526 1.24590 0.82565 1.11535 0.96328 1.86307 1.42274 1.54725 1.52979 0.94008 0.76512 0.79707 0.79091 1.21860 0.93315 0.99349 0.93822 1.21433 1.01174 0.91569 1.08978 0.86312 0.91717 0.91604 0.84244 0.85332 0.80036 0.84389 0.74270 0.92377 0.92710 0.88850 0.90382 0.93246 0.88707 0.93337 0.90566 0.87992 0.75502 0.89094 0.75567 1.20821 1.23044 0.81800 0.83266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.01 9.81 113.37 1.11 1.12 16 2 O -0.33 -3.00 10.49 -92.28 -0.97 -3.97 16 3 C 0.12 1.30 6.69 22.55 0.15 1.45 16 4 C -0.17 -1.84 9.97 22.33 0.22 -1.62 16 5 C -0.06 -0.76 9.74 22.46 0.22 -0.54 16 6 C -0.07 -0.91 5.80 -20.03 -0.12 -1.03 16 7 C 0.11 1.28 6.74 42.53 0.29 1.57 16 8 N -0.30 -3.65 11.65 -48.16 -0.56 -4.21 16 9 N -0.36 -0.91 3.39 -351.90 -1.19 -2.11 16 10 C 0.11 -0.73 6.98 85.63 0.60 -0.13 16 11 C 0.49 0.58 7.86 87.66 0.69 1.27 16 12 O -0.57 -7.88 15.72 -3.03 -0.05 -7.93 16 13 N -0.71 3.43 5.56 -463.06 -2.57 0.86 16 14 C 0.13 -0.23 5.51 86.38 0.48 0.25 16 15 C -0.10 0.48 3.69 -10.27 -0.04 0.44 16 16 H 0.11 -0.57 8.14 -2.38 -0.02 -0.59 16 17 C -0.15 0.65 7.46 31.12 0.23 0.88 16 18 C 0.05 -0.12 4.37 31.12 0.14 0.01 16 19 H 0.08 -0.30 7.87 -2.39 -0.02 -0.32 16 20 O -0.39 -0.39 10.63 -148.98 -1.58 -1.97 16 21 C 0.03 -0.08 10.85 113.37 1.23 1.15 16 22 C -0.13 0.42 7.47 31.12 0.23 0.65 16 23 C 0.08 -0.16 9.96 83.47 0.83 0.67 16 24 C -0.27 -1.03 5.34 -19.95 -0.11 -1.14 16 25 C -0.04 -0.04 2.00 71.24 0.14 0.10 16 26 O -0.55 -0.33 10.10 -148.98 -1.50 -1.84 16 27 Si 0.80 -3.30 30.74 68.60 2.11 -1.19 16 28 C -0.06 -0.65 8.94 22.47 0.20 -0.45 16 29 C -0.21 -1.82 9.02 22.33 0.20 -1.62 16 30 H 0.12 -0.39 8.14 -2.38 -0.02 -0.41 16 31 H 0.06 -0.05 7.66 -2.39 -0.02 -0.07 16 32 H 0.07 -0.07 7.65 -2.39 -0.02 -0.09 16 33 H 0.14 1.13 8.06 -2.91 -0.02 1.11 16 34 H 0.13 1.41 8.06 -2.91 -0.02 1.39 16 35 H 0.18 -3.21 8.07 -2.39 -0.02 -3.23 16 36 H 0.14 -1.47 8.14 -2.39 -0.02 -1.49 16 37 H 0.42 -5.07 8.47 -92.71 -0.79 -5.85 16 38 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 39 H 0.05 0.11 7.84 -2.39 -0.02 0.09 16 40 H 0.09 -0.41 7.89 -2.39 -0.02 -0.43 16 41 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 16 42 H 0.05 -0.23 8.14 -2.39 -0.02 -0.25 16 43 H 0.09 -0.47 8.14 -2.39 -0.02 -0.49 16 44 H 0.05 -0.21 8.14 -2.39 -0.02 -0.23 16 45 H 0.08 -0.14 8.14 -2.39 -0.02 -0.16 16 46 H 0.10 -0.44 8.10 -2.39 -0.02 -0.46 16 47 H 0.23 -3.04 6.40 -2.91 -0.02 -3.06 16 48 H 0.09 0.43 7.84 -2.39 -0.02 0.41 16 49 H 0.39 -2.80 8.70 -74.06 -0.64 -3.45 16 50 H -0.28 -0.05 7.11 99.48 0.71 0.65 16 51 H -0.30 -1.19 7.11 99.48 0.71 -0.48 16 52 H 0.16 1.37 4.51 -2.91 -0.01 1.36 16 53 H 0.15 0.54 6.28 -2.91 -0.02 0.52 16 Total: 0.00 -35.10 437.38 -0.06 -35.16 By element: Atomic # 1 Polarization: -15.40 SS G_CDS: -0.44 Total: -15.84 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: 6.70 Total: 3.04 kcal Atomic # 7 Polarization: -1.14 SS G_CDS: -4.33 Total: -5.47 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: -4.10 Total: -15.71 kcal Atomic # 14 Polarization: -3.30 SS G_CDS: 2.11 Total: -1.19 kcal Total: -35.10 -0.06 -35.16 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12896214_12622750.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.488 kcal (2) G-P(sol) polarization free energy of solvation -35.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds