Wall clock time and date at job start Tue Mar 9 2021 13:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42896 * 114.00115 * 2 1 4 4 H 1.09008 * 112.91048 * 341.25654 * 3 2 1 5 5 C 1.53957 * 113.53897 * 112.50556 * 3 2 1 6 6 C 1.53785 * 87.01691 * 89.19133 * 5 3 2 7 7 H 1.08997 * 113.61654 * 270.77618 * 6 5 3 8 8 C 1.53002 * 113.61426 * 139.95028 * 6 5 3 9 9 N 1.46507 * 109.46696 * 85.86387 * 8 6 5 10 10 C 1.34780 * 119.99889 * 180.02562 * 9 8 6 11 11 O 1.21627 * 119.99715 * 0.02562 * 10 9 8 12 12 C 1.47292 * 119.99860 * 180.02562 * 10 9 8 13 13 C 1.40365 * 120.04214 * 180.02562 * 12 10 9 14 14 O 1.35679 * 120.14223 * 359.97438 * 13 12 10 15 15 C 1.38319 * 119.72132 * 180.02562 * 13 12 10 16 16 C 1.39560 * 119.81602 * 0.02562 * 15 13 12 17 17 C 1.47568 * 119.95817 * 179.97438 * 16 15 13 18 18 C 1.36109 * 125.94735 * 179.97438 * 17 16 15 19 19 C 1.40795 * 106.73337 * 180.22729 * 18 17 16 20 20 C 1.34832 * 107.04954 * 359.62775 * 19 18 17 21 21 C 1.50703 * 125.65064 * 180.13041 * 20 19 18 22 22 O 1.42901 * 109.47038 * 65.26126 * 21 20 19 23 23 Si 1.86304 * 109.47232 * 185.25576 * 21 20 19 24 24 O 1.34226 * 108.69752 * 0.37982 * 20 19 18 25 25 C 1.39960 * 120.08988 * 0.24713 * 16 15 13 26 26 C 1.36390 * 120.27667 * 359.48943 * 25 16 15 27 27 C 1.53784 * 113.62022 * 210.00625 * 3 2 1 28 28 H 1.09001 * 109.47221 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47085 * 299.99169 * 1 2 3 30 30 H 1.08999 * 109.47837 * 59.99794 * 1 2 3 31 31 H 1.08994 * 113.66280 * 334.67018 * 5 3 2 32 32 H 1.08996 * 113.61757 * 203.71354 * 5 3 2 33 33 H 1.09001 * 109.47286 * 325.86787 * 8 6 5 34 34 H 1.08998 * 109.47568 * 205.86114 * 8 6 5 35 35 H 0.96996 * 120.00061 * 0.02562 * 9 8 6 36 36 H 0.96701 * 113.99590 * 270.02696 * 14 13 12 37 37 H 1.08003 * 120.09419 * 179.97438 * 15 13 12 38 38 H 1.08002 * 126.62860 * 359.95803 * 18 17 16 39 39 H 1.08005 * 126.47533 * 179.75634 * 19 18 17 40 40 H 1.08997 * 109.47516 * 305.25880 * 21 20 19 41 41 H 0.96706 * 114.00024 * 59.99766 * 22 21 20 42 42 H 1.48491 * 110.00131 * 180.02562 * 23 21 20 43 43 H 1.48495 * 109.99933 * 301.32827 * 23 21 20 44 44 H 1.08004 * 119.86487 * 179.74666 * 25 16 15 45 45 H 1.08004 * 119.90723 * 180.23061 * 26 25 16 46 46 H 1.08995 * 113.61464 * 156.33391 * 27 3 2 47 47 H 1.08993 * 113.68801 * 25.44043 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3142 2.0798 -0.3226 5 6 2.7538 1.6474 1.3040 6 6 4.0061 1.0330 0.6564 7 1 4.1098 -0.0372 0.8351 8 6 5.2909 1.8112 0.9472 9 7 5.8568 1.3607 2.2213 10 6 6.9971 1.9104 2.6841 11 8 7.5560 2.7808 2.0443 12 6 7.5663 1.4571 3.9647 13 6 8.7535 2.0293 4.4478 14 8 9.3801 3.0005 3.7372 15 6 9.2825 1.5982 5.6510 16 6 8.6333 0.5977 6.3757 17 6 9.1952 0.1350 7.6593 18 6 8.6657 -0.8279 8.4626 19 6 9.5197 -0.9415 9.5762 20 6 10.5227 -0.0583 9.3970 21 6 11.6751 0.1657 10.3420 22 8 12.4806 -1.0132 10.3986 23 14 12.7065 1.5939 9.7360 24 8 10.3217 0.5921 8.2402 25 6 7.4530 0.0285 5.8838 26 6 6.9252 0.4545 4.7005 27 6 3.3755 1.3720 -0.7046 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3635 0.5138 -0.8899 31 1 2.3942 1.0932 2.1709 32 1 2.8391 2.7179 1.4902 33 1 5.0654 2.8760 1.0062 34 1 6.0108 1.6360 0.1478 35 1 5.4109 0.6669 2.7317 36 1 10.0313 2.6670 3.1048 37 1 10.1959 2.0340 6.0281 38 1 7.7626 -1.3921 8.2827 39 1 9.3960 -1.6112 10.4145 40 1 11.2908 0.3913 11.3367 41 1 12.8567 -1.2740 9.5467 42 1 13.8466 1.8247 10.6589 43 1 13.2101 1.3122 8.3677 44 1 6.9558 -0.7484 6.4457 45 1 6.0122 0.0137 4.3284 46 1 3.6309 2.3671 -1.0686 47 1 3.5181 0.5966 -1.4572 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12896214_12807986.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:07:27 Heat of formation + Delta-G solvation = -73.398260 kcal Electronic energy + Delta-G solvation = -30794.227397 eV Core-core repulsion = 26298.127181 eV Total energy + Delta-G solvation = -4496.100216 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 360.150 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.75256 -41.54139 -40.72222 -39.49118 -38.21042 -37.84520 -37.29153 -35.19262 -34.24795 -33.44269 -31.35425 -30.67004 -29.14569 -27.53504 -26.92255 -26.68616 -24.56827 -24.11417 -23.50846 -22.39016 -21.91276 -21.33255 -20.58991 -19.73643 -18.84817 -18.55734 -17.71084 -17.60014 -17.47601 -17.16745 -16.69824 -16.65576 -16.37783 -16.27336 -16.03132 -15.99946 -15.85010 -15.36560 -15.11539 -14.73597 -14.47297 -14.35304 -14.17041 -14.02438 -13.89062 -13.78625 -13.60743 -13.50315 -13.47693 -12.96788 -12.94599 -12.75035 -12.58594 -12.06951 -11.92207 -11.83848 -11.71850 -11.28625 -11.14547 -10.85295 -10.73269 -10.63216 -10.54939 -10.05771 -9.95739 -9.02771 -5.00664 -0.78500 0.10780 0.64889 1.08935 1.42344 1.43931 1.68573 1.89884 2.00287 2.10872 2.60375 2.65035 3.01427 3.12609 3.32672 3.45003 3.49304 3.53416 3.65411 3.73505 3.77321 3.83356 3.90295 3.93482 4.15796 4.17963 4.25011 4.29461 4.37170 4.38569 4.40415 4.55848 4.60137 4.64513 4.65897 4.70300 4.71612 4.75989 4.78566 4.84094 4.96823 4.99584 5.07978 5.09886 5.16793 5.21523 5.36708 5.43802 5.47060 5.93363 6.17277 6.20112 6.47751 6.69080 7.25002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.370 6.370 3 C 0.061 3.939 4 H 0.076 0.924 5 C -0.155 4.155 6 C -0.118 4.118 7 H 0.101 0.899 8 C 0.129 3.871 9 N -0.727 5.727 10 C 0.557 3.443 11 O -0.519 6.519 12 C -0.164 4.164 13 C 0.178 3.822 14 O -0.474 6.474 15 C -0.141 4.141 16 C 0.029 3.971 17 C 0.024 3.976 18 C -0.178 4.178 19 C -0.173 4.173 20 C -0.044 4.044 21 C -0.034 4.034 22 O -0.521 6.521 23 Si 0.698 3.302 24 O -0.162 6.162 25 C -0.116 4.116 26 C -0.064 4.064 27 C -0.131 4.131 28 H 0.088 0.912 29 H 0.043 0.957 30 H 0.044 0.956 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.399 0.601 36 H 0.399 0.601 37 H 0.144 0.856 38 H 0.156 0.844 39 H 0.156 0.844 40 H 0.138 0.862 41 H 0.381 0.619 42 H -0.248 1.248 43 H -0.255 1.255 44 H 0.139 0.861 45 H 0.136 0.864 46 H 0.097 0.903 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.347 -2.027 0.378 4.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.289 6.289 3 C 0.002 3.998 4 H 0.094 0.906 5 C -0.193 4.193 6 C -0.136 4.136 7 H 0.119 0.881 8 C 0.006 3.994 9 N -0.380 5.380 10 C 0.344 3.656 11 O -0.395 6.395 12 C -0.168 4.168 13 C 0.131 3.869 14 O -0.285 6.285 15 C -0.159 4.159 16 C 0.029 3.971 17 C -0.026 4.026 18 C -0.197 4.197 19 C -0.192 4.192 20 C -0.094 4.094 21 C -0.144 4.144 22 O -0.327 6.327 23 Si 0.597 3.403 24 O -0.059 6.059 25 C -0.134 4.134 26 C -0.083 4.083 27 C -0.169 4.169 28 H 0.106 0.894 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.094 0.906 32 H 0.111 0.889 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.235 0.765 36 H 0.257 0.743 37 H 0.161 0.839 38 H 0.174 0.826 39 H 0.173 0.827 40 H 0.156 0.844 41 H 0.229 0.771 42 H -0.172 1.172 43 H -0.179 1.179 44 H 0.156 0.844 45 H 0.154 0.846 46 H 0.116 0.884 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.360 -0.655 0.430 3.450 hybrid contribution -0.104 -1.740 -0.284 1.766 sum -3.464 -2.394 0.146 4.213 Atomic orbital electron populations 1.22842 0.80517 1.03071 1.00200 1.87871 1.20031 1.26383 1.94579 1.23091 0.94541 0.85432 0.96699 0.90557 1.23610 0.96123 1.01540 0.98018 1.22755 0.92804 1.00575 0.97499 0.88108 1.21424 0.94196 0.98701 0.85091 1.45906 1.25928 1.42136 1.23991 1.17974 0.80731 0.81968 0.84935 1.90849 1.60182 1.30077 1.58426 1.20504 0.98902 1.00348 0.97041 1.18284 0.90803 0.86918 0.90854 1.84773 1.57936 1.30137 1.55684 1.21587 1.01594 0.97352 0.95370 1.17750 0.94201 0.95497 0.89677 1.20332 0.88267 0.98757 0.95224 1.21911 1.02396 1.00391 0.94966 1.21584 0.94878 1.01871 1.00866 1.22935 1.00955 0.97722 0.87816 1.24355 0.92054 0.97363 1.00628 1.86668 1.66540 1.43086 1.36425 0.94407 0.82139 0.83907 0.79825 1.83949 1.37994 1.53503 1.30442 1.20704 0.94943 1.01105 0.96646 1.20823 0.98969 0.94621 0.93904 1.23180 0.94052 1.03150 0.96508 0.89368 0.93855 0.93764 0.90610 0.88940 0.91051 0.91063 0.76541 0.74272 0.83858 0.82613 0.82676 0.84413 0.77110 1.17169 1.17934 0.84354 0.84599 0.88449 0.90025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.85 101.05 1.10 1.06 16 2 O -0.37 -0.31 10.63 -35.23 -0.37 -0.69 16 3 C 0.06 -0.05 4.38 -25.82 -0.11 -0.17 16 4 H 0.08 -0.13 7.87 -51.92 -0.41 -0.54 16 5 C -0.16 0.25 7.47 -25.82 -0.19 0.06 16 6 C -0.12 0.19 3.68 -89.80 -0.33 -0.14 16 7 H 0.10 -0.14 8.14 -51.93 -0.42 -0.56 16 8 C 0.13 -0.05 5.50 -4.04 -0.02 -0.07 16 9 N -0.73 0.20 5.50 -61.42 -0.34 -0.14 16 10 C 0.56 1.49 7.75 -12.58 -0.10 1.40 16 11 O -0.52 -3.30 15.14 -16.71 -0.25 -3.55 16 12 C -0.16 -0.21 5.89 -104.79 -0.62 -0.83 16 13 C 0.18 0.36 6.71 -38.75 -0.26 0.10 16 14 O -0.47 -1.31 11.56 -40.70 -0.47 -1.78 16 15 C -0.14 -0.16 9.65 -39.06 -0.38 -0.53 16 16 C 0.03 0.01 5.87 -104.95 -0.62 -0.60 16 17 C 0.02 0.02 7.02 -36.54 -0.26 -0.23 16 18 C -0.18 -0.01 10.26 -39.38 -0.40 -0.42 16 19 C -0.17 -0.07 10.78 -39.82 -0.43 -0.50 16 20 C -0.04 -0.03 6.21 -35.51 -0.22 -0.25 16 21 C -0.03 0.02 2.98 36.01 0.11 0.13 16 22 O -0.52 -0.23 12.88 -35.23 -0.45 -0.68 16 23 Si 0.70 -0.55 32.11 -169.99 -5.46 -6.01 16 24 O -0.16 -0.24 8.79 4.72 0.04 -0.19 16 25 C -0.12 0.15 9.48 -39.60 -0.38 -0.22 16 26 C -0.06 0.09 9.47 -39.62 -0.38 -0.29 16 27 C -0.13 0.19 7.48 -25.91 -0.19 0.00 16 28 H 0.09 -0.19 8.14 -51.93 -0.42 -0.61 16 29 H 0.04 -0.09 8.14 -51.93 -0.42 -0.51 16 30 H 0.04 -0.09 8.14 -51.93 -0.42 -0.51 16 31 H 0.08 -0.11 8.14 -51.93 -0.42 -0.53 16 32 H 0.09 -0.18 7.92 -51.93 -0.41 -0.59 16 33 H 0.07 0.03 7.88 -51.93 -0.41 -0.37 16 34 H 0.07 0.04 8.14 -51.93 -0.42 -0.39 16 35 H 0.40 -1.12 6.48 -40.82 -0.26 -1.38 16 36 H 0.40 -0.38 9.06 45.56 0.41 0.03 16 37 H 0.14 0.07 7.90 -52.48 -0.41 -0.34 16 38 H 0.16 -0.36 7.24 -52.49 -0.38 -0.74 16 39 H 0.16 -0.12 8.06 -52.48 -0.42 -0.54 16 40 H 0.14 -0.30 7.96 -51.93 -0.41 -0.72 16 41 H 0.38 -0.85 8.70 45.56 0.40 -0.46 16 42 H -0.25 -0.41 7.11 56.52 0.40 -0.01 16 43 H -0.26 -0.47 7.11 56.52 0.40 -0.07 16 44 H 0.14 -0.50 6.95 -52.48 -0.37 -0.86 16 45 H 0.14 -0.59 6.38 -52.48 -0.33 -0.93 16 46 H 0.10 -0.23 8.10 -51.93 -0.42 -0.65 16 47 H 0.08 -0.07 8.14 -51.93 -0.42 -0.49 16 LS Contribution 399.73 15.07 6.02 6.02 Total: 0.00 -9.76 399.73 -10.55 -20.31 By element: Atomic # 1 Polarization: -6.19 SS G_CDS: -5.59 Total: -11.79 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: -3.68 Total: -1.51 kcal Atomic # 7 Polarization: 0.20 SS G_CDS: -0.34 Total: -0.14 kcal Atomic # 8 Polarization: -5.39 SS G_CDS: -1.51 Total: -6.90 kcal Atomic # 14 Polarization: -0.55 SS G_CDS: -5.46 Total: -6.01 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -9.76 -10.55 -20.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12896214_12807986.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.089 kcal (2) G-P(sol) polarization free energy of solvation -9.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds