Wall clock time and date at job start Tue Mar 9 2021 13:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42896 * 114.00115 * 2 1 4 4 H 1.09008 * 112.91048 * 341.25654 * 3 2 1 5 5 C 1.53957 * 113.53897 * 112.50556 * 3 2 1 6 6 C 1.53785 * 87.01691 * 89.19133 * 5 3 2 7 7 H 1.08997 * 113.61654 * 270.77618 * 6 5 3 8 8 C 1.53002 * 113.61426 * 139.95028 * 6 5 3 9 9 N 1.46507 * 109.46696 * 85.86387 * 8 6 5 10 10 C 1.34780 * 119.99889 * 180.02562 * 9 8 6 11 11 O 1.21627 * 119.99715 * 0.02562 * 10 9 8 12 12 C 1.47292 * 119.99860 * 180.02562 * 10 9 8 13 13 C 1.40365 * 120.04214 * 180.02562 * 12 10 9 14 14 O 1.35679 * 120.14223 * 359.97438 * 13 12 10 15 15 C 1.38319 * 119.72132 * 180.02562 * 13 12 10 16 16 C 1.39560 * 119.81602 * 0.02562 * 15 13 12 17 17 C 1.47568 * 119.95817 * 179.97438 * 16 15 13 18 18 C 1.36109 * 125.94735 * 179.97438 * 17 16 15 19 19 C 1.40795 * 106.73337 * 180.22729 * 18 17 16 20 20 C 1.34832 * 107.04954 * 359.62775 * 19 18 17 21 21 C 1.50703 * 125.65064 * 180.13041 * 20 19 18 22 22 O 1.42901 * 109.47038 * 65.26126 * 21 20 19 23 23 Si 1.86304 * 109.47232 * 185.25576 * 21 20 19 24 24 O 1.34226 * 108.69752 * 0.37982 * 20 19 18 25 25 C 1.39960 * 120.08988 * 0.24713 * 16 15 13 26 26 C 1.36390 * 120.27667 * 359.48943 * 25 16 15 27 27 C 1.53784 * 113.62022 * 210.00625 * 3 2 1 28 28 H 1.09001 * 109.47221 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47085 * 299.99169 * 1 2 3 30 30 H 1.08999 * 109.47837 * 59.99794 * 1 2 3 31 31 H 1.08994 * 113.66280 * 334.67018 * 5 3 2 32 32 H 1.08996 * 113.61757 * 203.71354 * 5 3 2 33 33 H 1.09001 * 109.47286 * 325.86787 * 8 6 5 34 34 H 1.08998 * 109.47568 * 205.86114 * 8 6 5 35 35 H 0.96996 * 120.00061 * 0.02562 * 9 8 6 36 36 H 0.96701 * 113.99590 * 270.02696 * 14 13 12 37 37 H 1.08003 * 120.09419 * 179.97438 * 15 13 12 38 38 H 1.08002 * 126.62860 * 359.95803 * 18 17 16 39 39 H 1.08005 * 126.47533 * 179.75634 * 19 18 17 40 40 H 1.08997 * 109.47516 * 305.25880 * 21 20 19 41 41 H 0.96706 * 114.00024 * 59.99766 * 22 21 20 42 42 H 1.48491 * 110.00131 * 180.02562 * 23 21 20 43 43 H 1.48495 * 109.99933 * 301.32827 * 23 21 20 44 44 H 1.08004 * 119.86487 * 179.74666 * 25 16 15 45 45 H 1.08004 * 119.90723 * 180.23061 * 26 25 16 46 46 H 1.08995 * 113.61464 * 156.33391 * 27 3 2 47 47 H 1.08993 * 113.68801 * 25.44043 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3142 2.0798 -0.3226 5 6 2.7538 1.6474 1.3040 6 6 4.0061 1.0330 0.6564 7 1 4.1098 -0.0372 0.8351 8 6 5.2909 1.8112 0.9472 9 7 5.8568 1.3607 2.2213 10 6 6.9971 1.9104 2.6841 11 8 7.5560 2.7808 2.0443 12 6 7.5663 1.4571 3.9647 13 6 8.7535 2.0293 4.4478 14 8 9.3801 3.0005 3.7372 15 6 9.2825 1.5982 5.6510 16 6 8.6333 0.5977 6.3757 17 6 9.1952 0.1350 7.6593 18 6 8.6657 -0.8279 8.4626 19 6 9.5197 -0.9415 9.5762 20 6 10.5227 -0.0583 9.3970 21 6 11.6751 0.1657 10.3420 22 8 12.4806 -1.0132 10.3986 23 14 12.7065 1.5939 9.7360 24 8 10.3217 0.5921 8.2402 25 6 7.4530 0.0285 5.8838 26 6 6.9252 0.4545 4.7005 27 6 3.3755 1.3720 -0.7046 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3635 0.5138 -0.8899 31 1 2.3942 1.0932 2.1709 32 1 2.8391 2.7179 1.4902 33 1 5.0654 2.8760 1.0062 34 1 6.0108 1.6360 0.1478 35 1 5.4109 0.6669 2.7317 36 1 10.0313 2.6670 3.1048 37 1 10.1959 2.0340 6.0281 38 1 7.7626 -1.3921 8.2827 39 1 9.3960 -1.6112 10.4145 40 1 11.2908 0.3913 11.3367 41 1 12.8567 -1.2740 9.5467 42 1 13.8466 1.8247 10.6589 43 1 13.2101 1.3122 8.3677 44 1 6.9558 -0.7484 6.4457 45 1 6.0122 0.0137 4.3284 46 1 3.6309 2.3671 -1.0686 47 1 3.5181 0.5966 -1.4572 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12896214_12807986.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:07:25 Heat of formation + Delta-G solvation = -73.870412 kcal Electronic energy + Delta-G solvation = -30794.247871 eV Core-core repulsion = 26298.127181 eV Total energy + Delta-G solvation = -4496.120690 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 360.150 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -43.74674 -41.60655 -40.64953 -39.58636 -38.21416 -37.89220 -37.26860 -35.29435 -34.24070 -33.42962 -31.35396 -30.66696 -29.12331 -27.43523 -26.87139 -26.58857 -24.56084 -24.08673 -23.46321 -22.38980 -21.97448 -21.34982 -20.51397 -19.75416 -18.86108 -18.58272 -17.72739 -17.58805 -17.47549 -17.16737 -16.72665 -16.60302 -16.38584 -16.28509 -16.03091 -15.98767 -15.82510 -15.42450 -15.09482 -14.66783 -14.44514 -14.36249 -14.21992 -13.97649 -13.88542 -13.79779 -13.59324 -13.48786 -13.35506 -12.96277 -12.86248 -12.72044 -12.48716 -12.19504 -11.91693 -11.84273 -11.62547 -11.21284 -11.13922 -10.88207 -10.84915 -10.63631 -10.46234 -10.13524 -9.95920 -9.02019 -4.98824 -0.79872 0.13821 0.63857 1.12201 1.42870 1.44501 1.68815 1.87497 1.92357 2.06719 2.63790 2.72875 3.01336 3.20966 3.35441 3.52692 3.58477 3.61467 3.73009 3.79887 3.86337 3.88417 3.98629 4.00507 4.22209 4.27518 4.34522 4.36722 4.43166 4.54304 4.55552 4.63113 4.64741 4.70028 4.74884 4.79097 4.80274 4.86207 4.89069 4.90308 5.06139 5.07423 5.10291 5.18841 5.20997 5.28166 5.42820 5.45098 5.52992 5.95598 6.28460 6.31139 6.46626 6.68749 7.15593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.392 6.392 3 C 0.054 3.946 4 H 0.084 0.916 5 C -0.149 4.149 6 C -0.107 4.107 7 H 0.103 0.897 8 C 0.132 3.868 9 N -0.711 5.711 10 C 0.553 3.447 11 O -0.566 6.566 12 C -0.179 4.179 13 C 0.160 3.840 14 O -0.495 6.495 15 C -0.152 4.152 16 C 0.025 3.975 17 C 0.005 3.995 18 C -0.172 4.172 19 C -0.181 4.181 20 C -0.051 4.051 21 C -0.032 4.032 22 O -0.534 6.534 23 Si 0.761 3.239 24 O -0.176 6.176 25 C -0.109 4.109 26 C -0.052 4.052 27 C -0.132 4.132 28 H 0.093 0.907 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.413 0.587 36 H 0.408 0.592 37 H 0.139 0.861 38 H 0.182 0.818 39 H 0.167 0.833 40 H 0.157 0.843 41 H 0.390 0.610 42 H -0.280 1.280 43 H -0.295 1.295 44 H 0.170 0.830 45 H 0.170 0.830 46 H 0.105 0.895 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.208 -3.438 1.333 7.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.311 6.311 3 C -0.004 4.004 4 H 0.102 0.898 5 C -0.187 4.187 6 C -0.126 4.126 7 H 0.121 0.879 8 C 0.009 3.991 9 N -0.364 5.364 10 C 0.341 3.659 11 O -0.446 6.446 12 C -0.183 4.183 13 C 0.114 3.886 14 O -0.308 6.308 15 C -0.171 4.171 16 C 0.025 3.975 17 C -0.044 4.044 18 C -0.191 4.191 19 C -0.200 4.200 20 C -0.101 4.101 21 C -0.142 4.142 22 O -0.343 6.343 23 Si 0.665 3.335 24 O -0.074 6.074 25 C -0.127 4.127 26 C -0.070 4.070 27 C -0.170 4.170 28 H 0.112 0.888 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.096 0.904 32 H 0.115 0.885 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.251 0.749 36 H 0.268 0.732 37 H 0.156 0.844 38 H 0.199 0.801 39 H 0.185 0.815 40 H 0.175 0.825 41 H 0.240 0.760 42 H -0.207 1.207 43 H -0.222 1.222 44 H 0.187 0.813 45 H 0.187 0.813 46 H 0.124 0.876 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.261 -2.094 1.391 5.831 hybrid contribution 0.507 -1.339 -0.591 1.549 sum -4.754 -3.433 0.800 5.918 Atomic orbital electron populations 1.22957 0.79642 1.03684 1.00771 1.87833 1.21146 1.27351 1.94731 1.23200 0.94808 0.85158 0.97212 0.89791 1.23577 0.95582 1.01787 0.97755 1.22659 0.92023 1.00365 0.97529 0.87934 1.21389 0.94496 0.98507 0.84731 1.45806 1.24982 1.41762 1.23887 1.18255 0.81004 0.81453 0.85140 1.90820 1.61645 1.32288 1.59812 1.20535 0.99113 1.01619 0.97027 1.18488 0.91475 0.87376 0.91271 1.84727 1.58524 1.31313 1.56218 1.21569 1.01893 0.98174 0.95444 1.17945 0.94803 0.95248 0.89524 1.20571 0.88545 0.99565 0.95737 1.22248 1.02882 0.99739 0.94189 1.21842 0.94827 1.01928 1.01433 1.23162 1.01382 0.97887 0.87698 1.24454 0.91663 0.96676 1.01415 1.86640 1.66744 1.43419 1.37448 0.93618 0.80553 0.83279 0.76032 1.83936 1.38546 1.54044 1.30900 1.21049 0.94008 1.01110 0.96542 1.21157 0.99472 0.93112 0.93277 1.23219 0.93975 1.03439 0.96372 0.88818 0.93187 0.93287 0.90414 0.88519 0.91864 0.92089 0.74855 0.73203 0.84359 0.80072 0.81517 0.82541 0.76046 1.20664 1.22199 0.81293 0.81267 0.87635 0.90679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.08 10.85 113.37 1.23 1.15 16 2 O -0.39 -0.49 10.63 -148.98 -1.58 -2.07 16 3 C 0.05 -0.12 4.38 31.18 0.14 0.01 16 4 H 0.08 -0.34 7.87 -2.38 -0.02 -0.36 16 5 C -0.15 0.61 7.47 31.18 0.23 0.84 16 6 C -0.11 0.39 3.68 -10.26 -0.04 0.35 16 7 H 0.10 -0.37 8.14 -2.39 -0.02 -0.39 16 8 C 0.13 -0.06 5.50 86.38 0.47 0.42 16 9 N -0.71 0.57 5.50 -466.47 -2.57 -2.00 16 10 C 0.55 3.42 7.75 86.62 0.67 4.09 16 11 O -0.57 -8.34 15.14 16.88 0.26 -8.09 16 12 C -0.18 -0.53 5.89 -19.97 -0.12 -0.64 16 13 C 0.16 0.91 6.71 22.81 0.15 1.06 16 14 O -0.49 -4.04 11.56 -68.97 -0.80 -4.84 16 15 C -0.15 -0.54 9.65 22.61 0.22 -0.33 16 16 C 0.03 0.02 5.87 -20.08 -0.12 -0.10 16 17 C 0.01 0.01 7.02 24.24 0.17 0.18 16 18 C -0.17 0.27 10.26 22.40 0.23 0.50 16 19 C -0.18 0.07 10.78 22.11 0.24 0.31 16 20 C -0.05 -0.04 6.21 24.90 0.15 0.11 16 21 C -0.03 0.05 2.98 71.24 0.21 0.26 16 22 O -0.53 -0.37 12.88 -148.98 -1.92 -2.29 16 23 Si 0.76 -0.42 32.11 68.60 2.20 1.79 16 24 O -0.18 -0.59 8.79 -6.02 -0.05 -0.64 16 25 C -0.11 0.50 9.48 22.26 0.21 0.71 16 26 C -0.05 0.23 9.47 22.24 0.21 0.44 16 27 C -0.13 0.40 7.48 31.12 0.23 0.63 16 28 H 0.09 -0.45 8.14 -2.39 -0.02 -0.47 16 29 H 0.05 -0.24 8.14 -2.39 -0.02 -0.26 16 30 H 0.05 -0.22 8.14 -2.39 -0.02 -0.24 16 31 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 32 H 0.10 -0.46 7.92 -2.39 -0.02 -0.48 16 33 H 0.06 0.10 7.88 -2.39 -0.02 0.09 16 34 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 35 H 0.41 -2.93 6.48 -92.71 -0.60 -3.53 16 36 H 0.41 0.47 9.06 -74.06 -0.67 -0.20 16 37 H 0.14 0.48 7.90 -2.91 -0.02 0.45 16 38 H 0.18 -1.39 7.24 -2.91 -0.02 -1.42 16 39 H 0.17 -0.54 8.06 -2.91 -0.02 -0.56 16 40 H 0.16 -0.86 7.96 -2.39 -0.02 -0.88 16 41 H 0.39 -1.62 8.70 -74.05 -0.64 -2.27 16 42 H -0.28 -1.34 7.11 99.48 0.71 -0.63 16 43 H -0.30 -1.76 7.11 99.48 0.71 -1.05 16 44 H 0.17 -1.84 6.95 -2.91 -0.02 -1.86 16 45 H 0.17 -2.00 6.38 -2.91 -0.02 -2.02 16 46 H 0.11 -0.51 8.10 -2.39 -0.02 -0.53 16 47 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 Total: 0.00 -24.30 399.73 -0.80 -25.10 By element: Atomic # 1 Polarization: -16.11 SS G_CDS: -0.84 Total: -16.95 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: 4.50 Total: 9.99 kcal Atomic # 7 Polarization: 0.57 SS G_CDS: -2.57 Total: -2.00 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -4.10 Total: -17.92 kcal Atomic # 14 Polarization: -0.42 SS G_CDS: 2.20 Total: 1.79 kcal Total: -24.30 -0.80 -25.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12896214_12807986.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.769 kcal (2) G-P(sol) polarization free energy of solvation -24.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds