Wall clock time and date at job start Tue Mar 9 2021 13:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42890 * 114.00118 * 2 1 4 4 H 1.09003 * 112.85192 * 18.80148 * 3 2 1 5 5 C 1.53788 * 113.61630 * 150.00261 * 3 2 1 6 6 C 1.53782 * 87.07912 * 89.11396 * 5 3 2 7 7 H 1.09001 * 113.61531 * 270.79718 * 6 5 3 8 8 C 1.53005 * 113.61264 * 139.98414 * 6 5 3 9 9 N 1.46491 * 109.47149 * 174.99942 * 8 6 5 10 10 C 1.34786 * 120.00093 * 180.02562 * 9 8 6 11 11 O 1.21582 * 119.99708 * 359.97438 * 10 9 8 12 12 C 1.47596 * 119.99850 * 179.97438 * 10 9 8 13 13 C 1.39709 * 120.09342 * 0.29812 * 12 10 9 14 14 C 1.37720 * 119.91469 * 180.20828 * 13 12 10 15 15 C 1.50703 * 119.95809 * 179.79266 * 14 13 12 16 16 C 1.38979 * 120.08608 * 359.51211 * 14 13 12 17 17 O 1.35707 * 119.91070 * 180.25371 * 16 14 13 18 18 C 1.39015 * 120.17539 * 0.23787 * 16 14 13 19 19 C 1.50698 * 119.95255 * 180.02562 * 18 16 14 20 20 O 1.42895 * 109.47362 * 284.99772 * 19 18 16 21 21 Si 1.86302 * 109.46923 * 164.99897 * 19 18 16 22 22 C 1.37681 * 120.08983 * 359.97438 * 18 16 14 23 23 C 1.53783 * 87.08324 * 25.43455 * 6 5 3 24 24 H 1.08997 * 109.47038 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46672 * 300.00202 * 1 2 3 26 26 H 1.09000 * 109.46921 * 60.00209 * 1 2 3 27 27 H 1.08994 * 113.61058 * 334.56170 * 5 3 2 28 28 H 1.09004 * 113.61186 * 203.66323 * 5 3 2 29 29 H 1.09003 * 109.47117 * 54.99048 * 8 6 5 30 30 H 1.09005 * 109.46540 * 294.99994 * 8 6 5 31 31 H 0.97003 * 120.00209 * 359.97438 * 9 8 6 32 32 H 1.08002 * 120.04149 * 359.97241 * 13 12 10 33 33 H 1.09002 * 109.47152 * 269.72132 * 15 14 13 34 34 H 1.09001 * 109.46980 * 149.72232 * 15 14 13 35 35 H 1.09004 * 109.47113 * 29.72213 * 15 14 13 36 36 H 0.96706 * 113.99973 * 90.00439 * 17 16 14 37 37 H 1.09004 * 109.47430 * 45.00124 * 19 18 16 38 38 H 0.96702 * 113.99738 * 300.00338 * 20 19 18 39 39 H 1.48498 * 110.00127 * 58.67778 * 21 19 18 40 40 H 1.48497 * 110.00252 * 180.02562 * 21 19 18 41 41 H 1.08000 * 120.04253 * 180.02562 * 22 18 16 42 42 H 1.09001 * 113.61453 * 89.11770 * 23 6 5 43 43 H 1.08998 * 113.61059 * 220.01726 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3138 2.0788 0.3237 5 6 3.3757 1.3718 0.7045 6 6 4.0062 1.0329 -0.6566 7 1 4.1098 -0.0373 -0.8354 8 6 5.2910 1.8110 -0.9476 9 7 5.8763 1.3351 -2.2034 10 6 7.0206 1.8796 -2.6626 11 8 7.5668 2.7659 -2.0347 12 6 7.6105 1.3997 -3.9276 13 6 6.9811 0.3855 -4.6537 14 6 7.5371 -0.0624 -5.8314 15 6 6.8615 -1.1595 -6.6130 16 6 8.7173 0.5000 -6.3029 17 8 9.2593 0.0594 -7.4664 18 6 9.3439 1.5129 -5.5860 19 6 10.6231 2.1195 -6.1022 20 8 11.7034 1.2096 -5.8853 21 14 10.9630 3.7134 -5.1995 22 6 8.7968 1.9632 -4.4056 23 6 2.7535 1.6488 -1.3018 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 3.5171 0.5957 1.4566 28 1 3.6312 2.3670 1.0684 29 1 6.0008 1.6576 -0.1347 30 1 5.0610 2.8731 -1.0334 31 1 5.4407 0.6277 -2.7041 32 1 6.0618 -0.0492 -4.2900 33 1 7.2405 -2.1269 -6.2834 34 1 7.0700 -1.0303 -7.6751 35 1 5.7852 -1.1149 -6.4460 36 1 8.9505 0.5357 -8.2494 37 1 10.5256 2.3200 -7.1692 38 1 11.8484 0.9858 -4.9558 39 1 11.0665 3.4585 -3.7403 40 1 12.2217 4.3221 -5.6999 41 1 9.2840 2.7504 -3.8494 42 1 2.8390 2.7196 -1.4864 43 1 2.3927 1.0962 -2.1693 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12896214_13287732.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:07:59 Heat of formation + Delta-G solvation = -102.025039 kcal Electronic energy + Delta-G solvation = -25233.453452 eV Core-core repulsion = 21439.472500 eV Total energy + Delta-G solvation = -3793.980952 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 308.150 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.74748 -40.83293 -40.13176 -37.98948 -37.57070 -37.28693 -35.37808 -34.00179 -32.04419 -29.16727 -27.99888 -27.38888 -26.85704 -26.63025 -24.81643 -23.35712 -22.05161 -21.59253 -20.41616 -19.62847 -18.87451 -18.13955 -17.65341 -17.18069 -16.86297 -16.58883 -16.48581 -16.41637 -16.00887 -15.96282 -15.85166 -15.31567 -14.97560 -14.65093 -14.42135 -14.31377 -14.08857 -13.90795 -13.87119 -13.35196 -13.28155 -12.92241 -12.89074 -12.74757 -12.51328 -12.47226 -11.93515 -11.85785 -11.66195 -11.62366 -11.26706 -11.01232 -10.62999 -10.46490 -10.24721 -9.98306 -9.64976 -5.02009 -0.39693 0.06307 1.20174 1.52453 1.60768 1.85480 2.03567 2.56171 2.73017 3.11358 3.30281 3.48293 3.51977 3.58851 3.66459 3.73194 3.78541 3.86998 4.02553 4.16385 4.26933 4.33218 4.38000 4.47407 4.54399 4.55539 4.62011 4.64243 4.71716 4.76480 4.79609 4.81880 4.85978 4.89595 5.03933 5.06930 5.09655 5.17316 5.20250 5.26612 5.32346 5.43242 5.60246 6.28690 6.39212 6.41589 6.76569 7.08633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.393 6.393 3 C 0.054 3.946 4 H 0.085 0.915 5 C -0.132 4.132 6 C -0.109 4.109 7 H 0.100 0.900 8 C 0.130 3.870 9 N -0.709 5.709 10 C 0.556 3.444 11 O -0.580 6.580 12 C -0.151 4.151 13 C -0.054 4.054 14 C -0.120 4.120 15 C -0.109 4.109 16 C 0.159 3.841 17 O -0.495 6.495 18 C -0.153 4.153 19 C -0.061 4.061 20 O -0.540 6.540 21 Si 0.750 3.250 22 C -0.065 4.065 23 C -0.148 4.148 24 H 0.092 0.908 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.073 0.927 28 H 0.107 0.893 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.414 0.586 32 H 0.160 0.840 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.413 0.587 37 H 0.134 0.866 38 H 0.383 0.617 39 H -0.296 1.296 40 H -0.291 1.291 41 H 0.132 0.868 42 H 0.100 0.900 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.407 -0.741 -2.767 8.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.312 6.312 3 C -0.004 4.004 4 H 0.103 0.897 5 C -0.170 4.170 6 C -0.127 4.127 7 H 0.118 0.882 8 C 0.007 3.993 9 N -0.361 5.361 10 C 0.345 3.655 11 O -0.461 6.461 12 C -0.154 4.154 13 C -0.073 4.073 14 C -0.121 4.121 15 C -0.166 4.166 16 C 0.114 3.886 17 O -0.309 6.309 18 C -0.154 4.154 19 C -0.171 4.171 20 O -0.348 6.348 21 Si 0.657 3.343 22 C -0.084 4.084 23 C -0.185 4.185 24 H 0.111 0.889 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.091 0.909 28 H 0.125 0.875 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.252 0.748 32 H 0.178 0.822 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.274 0.726 37 H 0.151 0.849 38 H 0.231 0.769 39 H -0.224 1.224 40 H -0.219 1.219 41 H 0.149 0.851 42 H 0.118 0.882 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.083 -0.202 -2.099 7.390 hybrid contribution 0.203 -0.660 0.308 0.756 sum -6.880 -0.862 -1.791 7.161 Atomic orbital electron populations 1.22956 0.79636 1.03645 1.00799 1.87836 1.21155 1.27440 1.94741 1.23168 0.94796 0.85142 0.97288 0.89704 1.23232 0.94032 1.03450 0.96320 1.22663 0.92127 1.00278 0.97648 0.88181 1.21440 0.94209 0.98592 0.85070 1.45814 1.24514 1.40455 1.25342 1.18405 0.80734 0.81435 0.84948 1.90787 1.62749 1.32478 1.60118 1.19792 0.98002 1.01162 0.96440 1.21348 0.99577 0.93617 0.92739 1.20441 0.94674 0.99885 0.97092 1.20749 1.00787 0.95196 0.99849 1.18432 0.90366 0.91292 0.88543 1.84767 1.69146 1.61633 1.15367 1.20513 0.99234 0.98812 0.96802 1.24904 0.83839 1.00327 1.08056 1.86612 1.51505 1.64659 1.31996 0.94174 0.84767 0.79123 0.76244 1.21114 0.94525 0.98321 0.94451 1.23551 0.95367 1.01919 0.97692 0.88908 0.93278 0.93117 0.90861 0.87481 0.92210 0.91239 0.74815 0.82231 0.90906 0.90444 0.89395 0.72631 0.84866 0.76878 1.22354 1.21900 0.85085 0.88180 0.90487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.09 10.85 113.37 1.23 1.14 16 2 O -0.39 -0.46 10.63 -148.98 -1.58 -2.04 16 3 C 0.05 -0.14 4.37 31.12 0.14 -0.01 16 4 H 0.08 -0.39 7.87 -2.39 -0.02 -0.41 16 5 C -0.13 0.43 7.47 31.12 0.23 0.66 16 6 C -0.11 0.41 3.69 -10.26 -0.04 0.38 16 7 H 0.10 -0.33 8.14 -2.39 -0.02 -0.35 16 8 C 0.13 -0.11 5.51 86.38 0.48 0.37 16 9 N -0.71 0.65 5.51 -466.20 -2.57 -1.92 16 10 C 0.56 3.22 7.76 86.71 0.67 3.89 16 11 O -0.58 -8.33 16.34 -3.97 -0.06 -8.39 16 12 C -0.15 -0.40 5.87 -20.08 -0.12 -0.52 16 13 C -0.05 0.16 9.18 22.50 0.21 0.36 16 14 C -0.12 0.27 5.89 -19.81 -0.12 0.15 16 15 C -0.11 0.67 9.79 71.24 0.70 1.37 16 16 C 0.16 0.05 6.66 22.63 0.15 0.20 16 17 O -0.50 0.52 11.84 -90.28 -1.07 -0.55 16 18 C -0.15 -0.28 5.27 -19.81 -0.10 -0.38 16 19 C -0.06 -0.09 2.37 71.24 0.17 0.08 16 20 O -0.54 -3.01 12.88 -148.98 -1.92 -4.93 16 21 Si 0.75 1.66 30.24 68.60 2.07 3.74 16 22 C -0.07 -0.27 8.20 22.51 0.18 -0.09 16 23 C -0.15 0.70 7.46 31.12 0.23 0.93 16 24 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 25 H 0.05 -0.22 8.14 -2.39 -0.02 -0.24 16 26 H 0.05 -0.25 8.14 -2.39 -0.02 -0.27 16 27 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 28 H 0.11 -0.57 8.10 -2.38 -0.02 -0.59 16 29 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 30 H 0.07 0.02 7.84 -2.38 -0.02 0.00 16 31 H 0.41 -2.79 6.49 -92.71 -0.60 -3.40 16 32 H 0.16 -1.49 6.39 -2.91 -0.02 -1.51 16 33 H 0.07 -0.36 8.14 -2.39 -0.02 -0.38 16 34 H 0.08 -0.53 7.52 -2.39 -0.02 -0.55 16 35 H 0.09 -0.84 8.08 -2.38 -0.02 -0.86 16 36 H 0.41 -4.34 9.06 -74.05 -0.67 -5.02 16 37 H 0.13 -0.30 7.82 -2.39 -0.02 -0.32 16 38 H 0.38 0.42 8.70 -74.06 -0.64 -0.23 16 39 H -0.30 -2.61 6.68 99.48 0.67 -1.94 16 40 H -0.29 -2.44 7.11 99.48 0.71 -1.73 16 41 H 0.13 0.85 4.43 -2.91 -0.01 0.84 16 42 H 0.10 -0.60 7.90 -2.39 -0.02 -0.62 16 43 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 16 Total: 0.00 -22.01 356.93 -1.98 -23.99 By element: Atomic # 1 Polarization: -17.57 SS G_CDS: -0.86 Total: -18.43 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: 4.01 Total: 8.53 kcal Atomic # 7 Polarization: 0.65 SS G_CDS: -2.57 Total: -1.92 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: -4.64 Total: -15.91 kcal Atomic # 14 Polarization: 1.66 SS G_CDS: 2.07 Total: 3.74 kcal Total: -22.01 -1.98 -23.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12896214_13287732.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.031 kcal (2) G-P(sol) polarization free energy of solvation -22.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds