Wall clock time and date at job start Tue Mar 9 2021 13:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42891 * 113.99952 * 2 1 4 4 H 1.08996 * 112.85493 * 341.19773 * 3 2 1 5 5 C 1.53783 * 113.69231 * 112.46415 * 3 2 1 6 6 C 1.53787 * 87.08023 * 89.12410 * 5 3 2 7 7 H 1.08996 * 113.69332 * 270.87590 * 6 5 3 8 8 C 1.53004 * 113.61355 * 139.98452 * 6 5 3 9 9 N 1.46499 * 109.47198 * 87.50373 * 8 6 5 10 10 C 1.34777 * 119.99665 * 180.27868 * 9 8 6 11 11 O 1.21583 * 120.00270 * 359.72083 * 10 9 8 12 12 C 1.47532 * 119.99530 * 179.72393 * 10 9 8 13 13 C 1.40143 * 120.18951 * 179.71859 * 12 10 9 14 14 O 1.35652 * 120.14748 * 0.02562 * 13 12 10 15 15 C 1.38710 * 119.69769 * 179.76964 * 13 12 10 16 16 C 1.50702 * 119.95377 * 180.23259 * 15 13 12 17 17 O 1.42898 * 109.47054 * 285.27485 * 16 15 13 18 18 Si 1.86304 * 109.46927 * 165.27943 * 16 15 13 19 19 C 1.38051 * 120.08709 * 0.51227 * 15 13 12 20 20 C 1.38554 * 120.38741 * 359.74036 * 19 15 13 21 21 C 1.50702 * 119.84713 * 180.02562 * 20 19 15 22 22 C 1.37780 * 120.30076 * 0.02562 * 20 19 15 23 23 C 1.53782 * 87.08149 * 25.43612 * 6 5 3 24 24 H 1.08999 * 109.47474 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46784 * 300.00099 * 1 2 3 26 26 H 1.08996 * 109.46923 * 60.00127 * 1 2 3 27 27 H 1.08998 * 113.61533 * 334.57920 * 5 3 2 28 28 H 1.08998 * 113.62034 * 203.67189 * 5 3 2 29 29 H 1.09009 * 109.46730 * 327.50161 * 8 6 5 30 30 H 1.08998 * 109.46846 * 207.50705 * 8 6 5 31 31 H 0.97001 * 119.99790 * 359.97438 * 9 8 6 32 32 H 0.96700 * 114.00053 * 90.00296 * 14 13 12 33 33 H 1.08994 * 109.47749 * 45.28159 * 16 15 13 34 34 H 0.96698 * 114.00342 * 300.00417 * 17 16 15 35 35 H 1.48501 * 110.00162 * 179.97438 * 18 16 15 36 36 H 1.48499 * 109.99924 * 301.31666 * 18 16 15 37 37 H 1.07998 * 119.80806 * 179.76979 * 19 15 13 38 38 H 1.08998 * 109.46922 * 269.97566 * 21 20 19 39 39 H 1.08998 * 109.46920 * 29.97528 * 21 20 19 40 40 H 1.08994 * 109.47079 * 149.97808 * 21 20 19 41 41 H 1.08003 * 120.04802 * 179.97438 * 22 20 19 42 42 H 1.09001 * 113.61616 * 89.11044 * 23 6 5 43 43 H 1.09000 * 113.61435 * 219.93527 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3138 2.0788 -0.3237 5 6 2.7531 1.6510 1.3014 6 6 4.0063 1.0351 0.6570 7 1 4.1106 -0.0348 0.8372 8 6 5.2906 1.8145 0.9471 9 7 5.8762 1.3406 2.2035 10 6 7.0168 1.8906 2.6651 11 8 7.5624 2.7766 2.0361 12 6 7.6032 1.4176 3.9335 13 6 8.7922 1.9826 4.4142 14 8 9.4095 2.9679 3.7155 15 6 9.3320 1.5334 5.6104 16 6 10.6075 2.1405 6.1353 17 8 11.7147 1.6559 5.3729 18 14 10.8304 1.6675 7.9235 19 6 8.7054 0.5269 6.3177 20 6 7.5326 -0.0379 5.8432 21 6 6.8585 -1.1354 6.6255 22 6 6.9799 0.3994 4.6593 23 6 3.3756 1.3718 -0.7045 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 2.3927 1.0994 2.1696 28 1 2.8380 2.7222 1.4845 29 1 5.0599 2.8765 1.0314 30 1 6.0005 1.6603 0.1344 31 1 5.4406 0.6340 2.7055 32 1 9.1219 3.8595 3.9550 33 1 10.5552 3.2259 6.0505 34 1 11.8225 0.6954 5.4026 35 1 12.0852 2.2595 8.4529 36 1 9.6700 2.1380 8.7218 37 1 9.1317 0.1781 7.2467 38 1 7.2420 -2.1022 6.2994 39 1 7.0634 -1.0029 7.6878 40 1 5.7828 -1.0951 6.4550 41 1 6.0657 -0.0440 4.2929 42 1 3.6305 2.3667 -1.0698 43 1 3.5189 0.5954 -1.4561 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12896214_13422088.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:08:19 Heat of formation + Delta-G solvation = -101.754455 kcal Electronic energy + Delta-G solvation = -25382.867737 eV Core-core repulsion = 21588.898518 eV Total energy + Delta-G solvation = -3793.969219 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 308.150 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.78645 -40.77061 -39.87382 -38.08934 -37.66156 -37.28572 -35.30971 -33.06574 -32.88966 -29.25766 -27.51913 -27.36988 -26.78663 -26.67416 -25.05259 -23.40410 -21.97445 -21.59033 -20.42910 -19.67029 -18.43993 -18.15243 -17.48703 -17.29010 -16.87466 -16.59635 -16.51756 -16.37696 -16.03905 -15.94610 -15.55345 -15.24415 -14.89107 -14.72754 -14.39523 -14.37337 -14.18178 -13.88672 -13.63695 -13.38678 -13.33163 -12.90559 -12.83402 -12.54232 -12.49728 -12.19169 -12.10694 -11.87534 -11.76895 -11.63700 -11.24798 -10.94987 -10.49055 -10.40251 -10.30711 -10.02277 -9.50980 -5.03828 -0.35865 0.06421 1.25584 1.63045 1.69955 1.93932 2.05445 2.55041 2.70646 3.15065 3.39510 3.47042 3.55469 3.61417 3.67417 3.74604 3.80383 3.85743 4.12118 4.19073 4.23609 4.30532 4.35705 4.48819 4.53185 4.54184 4.60821 4.61261 4.72258 4.75765 4.82693 4.84283 4.86777 4.93139 4.98616 5.04698 5.15373 5.17580 5.24164 5.27550 5.41709 5.42835 5.68708 6.26546 6.42268 6.67809 6.75339 7.11770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.392 6.392 3 C 0.056 3.944 4 H 0.085 0.915 5 C -0.148 4.148 6 C -0.108 4.108 7 H 0.101 0.899 8 C 0.132 3.868 9 N -0.712 5.712 10 C 0.552 3.448 11 O -0.567 6.567 12 C -0.182 4.182 13 C 0.159 3.841 14 O -0.491 6.491 15 C -0.159 4.159 16 C -0.076 4.076 17 O -0.555 6.555 18 Si 0.792 3.208 19 C -0.070 4.070 20 C -0.093 4.093 21 C -0.118 4.118 22 C -0.063 4.063 23 C -0.133 4.133 24 H 0.094 0.906 25 H 0.050 0.950 26 H 0.049 0.951 27 H 0.077 0.923 28 H 0.097 0.903 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.413 0.587 32 H 0.398 0.602 33 H 0.096 0.904 34 H 0.392 0.608 35 H -0.301 1.301 36 H -0.276 1.276 37 H 0.165 0.835 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.157 0.843 42 H 0.105 0.895 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.770 -5.834 4.759 10.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.311 6.311 3 C -0.002 4.002 4 H 0.103 0.897 5 C -0.186 4.186 6 C -0.126 4.126 7 H 0.119 0.881 8 C 0.009 3.991 9 N -0.365 5.365 10 C 0.340 3.660 11 O -0.447 6.447 12 C -0.185 4.185 13 C 0.112 3.888 14 O -0.303 6.303 15 C -0.160 4.160 16 C -0.185 4.185 17 O -0.363 6.363 18 Si 0.696 3.304 19 C -0.087 4.087 20 C -0.093 4.093 21 C -0.174 4.174 22 C -0.082 4.082 23 C -0.171 4.171 24 H 0.112 0.888 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.096 0.904 28 H 0.116 0.884 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.250 0.750 32 H 0.257 0.743 33 H 0.113 0.887 34 H 0.242 0.758 35 H -0.229 1.229 36 H -0.202 1.202 37 H 0.182 0.818 38 H 0.106 0.894 39 H 0.103 0.897 40 H 0.099 0.901 41 H 0.174 0.826 42 H 0.124 0.876 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.876 -4.913 4.682 8.977 hybrid contribution -0.582 1.198 -0.505 1.424 sum -6.459 -3.715 4.177 8.542 Atomic orbital electron populations 1.22964 0.79591 1.03712 1.00791 1.87837 1.21195 1.27315 1.94723 1.23139 0.94752 0.85205 0.97119 0.89690 1.23546 0.95444 1.01774 0.97812 1.22660 0.91983 1.00284 0.97691 0.88057 1.21393 0.94229 0.98376 0.85112 1.45812 1.24853 1.40576 1.25227 1.18383 0.80714 0.81794 0.85103 1.90804 1.62061 1.32111 1.59756 1.20428 0.97493 1.03140 0.97480 1.18606 0.89257 0.91313 0.89615 1.84771 1.64724 1.17617 1.63193 1.20788 0.99486 1.00826 0.94937 1.25305 0.83931 1.00779 1.08466 1.86532 1.47177 1.28833 1.73729 0.93788 0.76805 0.89660 0.70142 1.21316 0.94546 0.93436 0.99415 1.20159 0.95241 0.98663 0.95225 1.20936 1.00862 0.95600 0.99987 1.21428 0.99533 0.93529 0.93675 1.23231 0.94063 1.03437 0.96329 0.88791 0.93151 0.93267 0.90435 0.88428 0.91687 0.92504 0.74966 0.74297 0.88659 0.75807 1.22867 1.20232 0.81764 0.89364 0.89714 0.90141 0.82558 0.87637 0.90712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.08 10.85 113.37 1.23 1.15 16 2 O -0.39 -0.65 10.64 -148.98 -1.58 -2.24 16 3 C 0.06 -0.10 4.37 31.12 0.14 0.04 16 4 H 0.09 -0.33 7.87 -2.39 -0.02 -0.34 16 5 C -0.15 0.52 7.47 31.12 0.23 0.75 16 6 C -0.11 0.27 3.69 -10.26 -0.04 0.23 16 7 H 0.10 -0.23 8.14 -2.39 -0.02 -0.25 16 8 C 0.13 0.16 5.51 86.38 0.48 0.64 16 9 N -0.71 -0.90 5.51 -466.27 -2.57 -3.47 16 10 C 0.55 4.73 7.76 86.69 0.67 5.40 16 11 O -0.57 -9.82 15.16 16.94 0.26 -9.57 16 12 C -0.18 -0.91 5.89 -20.01 -0.12 -1.03 16 13 C 0.16 1.17 6.69 22.85 0.15 1.33 16 14 O -0.49 -5.73 10.91 -68.75 -0.75 -6.48 16 15 C -0.16 -0.32 5.27 -19.80 -0.10 -0.42 16 16 C -0.08 -0.15 2.37 71.24 0.17 0.02 16 17 O -0.56 -2.64 12.88 -148.98 -1.92 -4.56 16 18 Si 0.79 -2.24 29.91 68.60 2.05 -0.19 16 19 C -0.07 0.27 8.30 22.30 0.19 0.45 16 20 C -0.09 0.45 5.87 -19.90 -0.12 0.33 16 21 C -0.12 1.24 10.00 71.24 0.71 1.95 16 22 C -0.06 0.16 9.18 22.52 0.21 0.37 16 23 C -0.13 0.28 7.47 31.12 0.23 0.51 16 24 H 0.09 -0.43 8.14 -2.39 -0.02 -0.45 16 25 H 0.05 -0.23 8.14 -2.39 -0.02 -0.25 16 26 H 0.05 -0.21 8.14 -2.39 -0.02 -0.23 16 27 H 0.08 -0.28 8.14 -2.39 -0.02 -0.30 16 28 H 0.10 -0.43 7.90 -2.39 -0.02 -0.45 16 29 H 0.06 0.17 7.84 -2.38 -0.02 0.15 16 30 H 0.06 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.41 -2.00 6.50 -92.71 -0.60 -2.60 16 32 H 0.40 2.18 9.06 -74.06 -0.67 1.51 16 33 H 0.10 0.40 7.83 -2.39 -0.02 0.38 16 34 H 0.39 -1.63 8.70 -74.06 -0.64 -2.27 16 35 H -0.30 -1.59 7.11 99.48 0.71 -0.89 16 36 H -0.28 -0.18 7.11 99.48 0.71 0.53 16 37 H 0.17 -1.68 5.10 -2.91 -0.01 -1.70 16 38 H 0.09 -1.04 8.14 -2.39 -0.02 -1.06 16 39 H 0.08 -1.03 8.08 -2.39 -0.02 -1.05 16 40 H 0.08 -0.95 8.08 -2.39 -0.02 -0.97 16 41 H 0.16 -1.36 6.40 -2.91 -0.02 -1.38 16 42 H 0.11 -0.42 8.10 -2.39 -0.02 -0.43 16 43 H 0.07 -0.04 8.14 -2.39 -0.02 -0.06 16 Total: 0.00 -25.35 356.52 -1.31 -26.66 By element: Atomic # 1 Polarization: -11.04 SS G_CDS: -0.83 Total: -11.86 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: 4.03 Total: 11.71 kcal Atomic # 7 Polarization: -0.90 SS G_CDS: -2.57 Total: -3.47 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -4.00 Total: -22.85 kcal Atomic # 14 Polarization: -2.24 SS G_CDS: 2.05 Total: -0.19 kcal Total: -25.35 -1.31 -26.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12896214_13422088.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.099 kcal (2) G-P(sol) polarization free energy of solvation -25.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds