Wall clock time and date at job start Tue Mar 9 2021 13:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42905 * 114.00012 * 2 1 4 4 H 1.08991 * 112.90682 * 341.24887 * 3 2 1 5 5 C 1.53784 * 113.61515 * 112.50311 * 3 2 1 6 6 C 1.53773 * 87.08123 * 89.11494 * 5 3 2 7 7 H 1.08999 * 113.69296 * 270.87139 * 6 5 3 8 8 C 1.53003 * 113.61637 * 139.98254 * 6 5 3 9 9 N 1.46503 * 109.47331 * 87.49882 * 8 6 5 10 10 C 1.34776 * 119.99981 * 180.02562 * 9 8 6 11 11 O 1.21280 * 119.99924 * 359.97438 * 10 9 8 12 12 C 1.50699 * 119.99696 * 180.02562 * 10 9 8 13 13 N 1.46500 * 109.46884 * 179.97438 * 12 10 9 14 14 C 1.36832 * 125.06170 * 265.02446 * 13 12 10 15 15 C 1.34234 * 109.93820 * 179.97438 * 14 13 12 16 16 C 1.50703 * 126.50189 * 179.97438 * 15 14 13 17 17 O 1.42899 * 109.47479 * 255.00119 * 16 15 14 18 18 Si 1.86299 * 109.46870 * 15.00500 * 16 15 14 19 19 C 1.46491 * 106.99956 * 359.97438 * 15 14 13 20 20 C 1.39596 * 134.03251 * 179.97438 * 19 15 14 21 21 C 1.36660 * 119.76020 * 179.97438 * 20 19 15 22 22 C 1.38795 * 120.52817 * 0.02652 * 21 20 19 23 23 C 1.37779 * 120.66827 * 359.96957 * 22 21 20 24 24 C 1.37691 * 125.06503 * 85.01906 * 13 12 10 25 25 C 1.53781 * 87.08704 * 25.43050 * 6 5 3 26 26 H 1.09000 * 109.46945 * 60.00388 * 1 2 3 27 27 H 1.08998 * 109.47395 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47108 * 300.00465 * 1 2 3 29 29 H 1.08994 * 113.61422 * 334.56174 * 5 3 2 30 30 H 1.09000 * 113.61277 * 203.66603 * 5 3 2 31 31 H 1.09004 * 109.46449 * 327.49812 * 8 6 5 32 32 H 1.09001 * 109.47324 * 207.49886 * 8 6 5 33 33 H 0.96999 * 119.99468 * 0.02562 * 9 8 6 34 34 H 1.08991 * 109.47499 * 59.99958 * 12 10 9 35 35 H 1.09001 * 109.46854 * 299.99453 * 12 10 9 36 36 H 1.07993 * 125.03284 * 359.95697 * 14 13 12 37 37 H 1.09007 * 109.46903 * 135.00234 * 16 15 14 38 38 H 0.96703 * 113.99853 * 179.97438 * 17 16 15 39 39 H 1.48497 * 109.99792 * 299.99529 * 18 16 15 40 40 H 1.48504 * 110.00278 * 61.31537 * 18 16 15 41 41 H 1.07994 * 120.12169 * 0.02578 * 20 19 15 42 42 H 1.08001 * 119.73483 * 180.02562 * 21 20 19 43 43 H 1.07999 * 119.66344 * 179.70368 * 22 21 20 44 44 H 1.08001 * 120.11280 * 179.97438 * 23 22 21 45 45 H 1.09006 * 113.61168 * 89.11203 * 25 6 5 46 46 H 1.08997 * 113.61793 * 219.93613 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3143 2.0797 -0.3227 5 6 2.7534 1.6489 1.3018 6 6 4.0061 1.0331 0.6566 7 1 4.1097 -0.0371 0.8354 8 6 5.2909 1.8112 0.9475 9 7 5.8763 1.3354 2.2034 10 6 7.0200 1.8805 2.6630 11 8 7.5648 2.7647 2.0366 12 6 7.6224 1.3906 3.9545 13 7 8.8526 2.1358 4.2331 14 6 10.1140 1.7229 3.9007 15 6 11.0141 2.6364 4.2973 16 6 12.5086 2.5583 4.1198 17 8 13.1210 2.2399 5.3710 18 14 12.9175 1.2351 2.8737 19 6 10.2681 3.7236 4.9355 20 6 10.6339 4.9301 5.5350 21 6 9.6707 5.7501 6.0522 22 6 8.3311 5.3929 5.9867 23 6 7.9480 4.2069 5.3994 24 6 8.9116 3.3560 4.8684 25 6 3.3756 1.3718 -0.7045 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 2.3926 1.0965 2.1693 30 1 2.8389 2.7198 1.4862 31 1 5.0609 2.8733 1.0332 32 1 6.0007 1.6576 0.1347 33 1 5.4406 0.6280 2.7041 34 1 7.8528 0.3289 3.8683 35 1 6.9125 1.5436 4.7675 36 1 10.3506 0.7987 3.3945 37 1 12.8831 3.5189 3.7660 38 1 14.0849 2.1729 5.3314 39 1 12.4121 -0.0795 3.3444 40 1 12.3128 1.5707 1.5595 41 1 11.6743 5.2147 5.5892 42 1 9.9542 6.6836 6.5155 43 1 7.5819 6.0492 6.4041 44 1 6.9031 3.9376 5.3537 45 1 3.6311 2.3670 -1.0685 46 1 3.5183 0.5963 -1.4570 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12896214_9818708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:10:31 Heat of formation + Delta-G solvation = -10.532361 kcal Electronic energy + Delta-G solvation = -27803.451671 eV Core-core repulsion = 23854.704520 eV Total energy + Delta-G solvation = -3948.747151 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.65186 -41.09214 -40.30457 -38.13709 -37.65739 -37.34903 -35.39827 -34.27518 -31.67276 -30.39308 -29.98832 -28.41188 -27.35370 -26.71138 -25.68560 -23.98438 -23.57346 -22.71200 -21.80808 -20.67765 -20.48129 -18.73631 -18.34738 -18.25318 -17.84136 -17.44378 -16.84429 -16.80097 -16.55817 -16.51643 -16.10168 -15.78356 -15.54259 -15.31525 -14.99176 -14.87276 -14.78924 -14.56884 -14.37939 -14.20931 -14.03921 -13.64312 -13.43435 -13.36455 -12.92959 -12.77347 -12.65918 -12.55579 -12.49112 -12.08008 -11.94012 -11.82845 -11.72962 -11.36641 -11.14514 -10.65003 -10.52757 -10.28939 -10.19151 -9.27014 -8.74834 -4.99083 0.03706 0.56214 1.29227 1.31448 1.32098 1.48975 1.68158 1.96809 2.09767 2.66565 2.87981 3.39670 3.44986 3.50817 3.52288 3.63455 3.67331 3.70796 3.78569 3.80783 3.95715 4.00115 4.17494 4.18314 4.21360 4.28206 4.34494 4.48843 4.50319 4.51041 4.54442 4.60474 4.65686 4.70157 4.71108 4.80292 4.82515 4.82930 4.99999 5.06260 5.09469 5.17860 5.34730 5.43472 5.57671 5.64633 5.65222 6.02876 6.14372 6.22415 6.34212 6.99154 6.99841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.392 6.392 3 C 0.055 3.945 4 H 0.085 0.915 5 C -0.148 4.148 6 C -0.106 4.106 7 H 0.103 0.897 8 C 0.133 3.867 9 N -0.709 5.709 10 C 0.490 3.510 11 O -0.574 6.574 12 C 0.087 3.913 13 N -0.468 5.468 14 C 0.051 3.949 15 C -0.179 4.179 16 C -0.046 4.046 17 O -0.565 6.565 18 Si 0.786 3.214 19 C -0.120 4.120 20 C -0.082 4.082 21 C -0.151 4.151 22 C -0.102 4.102 23 C -0.137 4.137 24 C 0.089 3.911 25 C -0.134 4.134 26 H 0.049 0.951 27 H 0.093 0.907 28 H 0.050 0.950 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.420 0.580 34 H 0.154 0.846 35 H 0.148 0.852 36 H 0.174 0.826 37 H 0.075 0.925 38 H 0.399 0.601 39 H -0.281 1.281 40 H -0.302 1.302 41 H 0.129 0.871 42 H 0.145 0.855 43 H 0.151 0.849 44 H 0.133 0.867 45 H 0.104 0.896 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.057 -2.757 0.435 4.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.311 6.311 3 C -0.003 4.003 4 H 0.103 0.897 5 C -0.185 4.185 6 C -0.125 4.125 7 H 0.121 0.879 8 C 0.009 3.991 9 N -0.362 5.362 10 C 0.275 3.725 11 O -0.453 6.453 12 C -0.038 4.038 13 N -0.150 5.150 14 C -0.074 4.074 15 C -0.187 4.187 16 C -0.155 4.155 17 O -0.374 6.374 18 Si 0.691 3.309 19 C -0.124 4.124 20 C -0.100 4.100 21 C -0.170 4.170 22 C -0.121 4.121 23 C -0.157 4.157 24 C -0.016 4.016 25 C -0.172 4.172 26 H 0.068 0.932 27 H 0.112 0.888 28 H 0.068 0.932 29 H 0.096 0.904 30 H 0.115 0.885 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.257 0.743 34 H 0.172 0.828 35 H 0.166 0.834 36 H 0.191 0.809 37 H 0.093 0.907 38 H 0.250 0.750 39 H -0.208 1.208 40 H -0.230 1.230 41 H 0.147 0.853 42 H 0.163 0.837 43 H 0.169 0.831 44 H 0.151 0.849 45 H 0.122 0.878 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.779 -3.096 -0.428 4.903 hybrid contribution -0.884 0.277 0.089 0.931 sum -4.662 -2.818 -0.339 5.459 Atomic orbital electron populations 1.22963 0.79572 1.03717 1.00809 1.87836 1.21215 1.27317 1.94735 1.23151 0.94764 0.85208 0.97210 0.89746 1.23534 0.95462 1.01753 0.97766 1.22648 0.91961 1.00331 0.97514 0.87922 1.21361 0.94196 0.98246 0.85277 1.45834 1.24524 1.40589 1.25245 1.21381 0.81239 0.82236 0.87639 1.90791 1.62377 1.32151 1.59934 1.21973 0.86325 0.99000 0.96482 1.43390 1.05542 1.16966 1.49140 1.21719 0.83368 0.99832 1.02489 1.20053 0.94332 0.95981 1.08320 1.24222 0.88799 1.08318 0.94211 1.86482 1.26445 1.93560 1.30933 0.94288 0.89212 0.74567 0.72838 1.19356 0.92303 0.96731 1.03981 1.20506 1.00406 0.92226 0.96867 1.20991 0.92861 1.00916 1.02187 1.21201 0.96889 0.95680 0.98284 1.20269 0.97904 0.94906 1.02629 1.18503 0.95619 0.87761 0.99715 1.23231 0.94146 1.03354 0.96436 0.93237 0.88805 0.93152 0.90410 0.88463 0.91984 0.92642 0.74292 0.82849 0.83412 0.80887 0.90699 0.75030 1.20779 1.22967 0.85322 0.83734 0.83139 0.84879 0.87771 0.90750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.08 10.85 113.37 1.23 1.15 16 2 O -0.39 -0.58 10.63 -148.98 -1.58 -2.16 16 3 C 0.05 -0.12 4.37 31.12 0.14 0.02 16 4 H 0.08 -0.34 7.87 -2.39 -0.02 -0.36 16 5 C -0.15 0.64 7.46 31.12 0.23 0.87 16 6 C -0.11 0.40 3.69 -10.27 -0.04 0.36 16 7 H 0.10 -0.37 8.14 -2.39 -0.02 -0.39 16 8 C 0.13 -0.10 5.51 86.38 0.48 0.37 16 9 N -0.71 2.03 5.56 -463.05 -2.57 -0.55 16 10 C 0.49 1.78 7.90 87.66 0.69 2.47 16 11 O -0.57 -8.78 16.42 -3.03 -0.05 -8.83 16 12 C 0.09 -0.13 6.48 85.63 0.56 0.42 16 13 N -0.47 -3.75 2.27 -520.01 -1.18 -4.93 16 14 C 0.05 0.50 9.89 83.00 0.82 1.32 16 15 C -0.18 -2.11 5.61 -18.63 -0.10 -2.21 16 16 C -0.05 -0.24 3.05 71.24 0.22 -0.02 16 17 O -0.56 -2.47 12.86 -148.98 -1.92 -4.39 16 18 Si 0.79 0.81 30.79 68.60 2.11 2.93 16 19 C -0.12 -1.63 6.35 -20.20 -0.13 -1.76 16 20 C -0.08 -0.86 10.05 22.23 0.22 -0.63 16 21 C -0.15 -1.04 9.97 22.03 0.22 -0.82 16 22 C -0.10 -0.59 10.01 22.29 0.22 -0.37 16 23 C -0.14 -1.05 10.00 22.37 0.22 -0.83 16 24 C 0.09 1.03 6.80 39.03 0.27 1.29 16 25 C -0.13 0.36 7.47 31.12 0.23 0.59 16 26 H 0.05 -0.21 8.14 -2.39 -0.02 -0.23 16 27 H 0.09 -0.42 8.14 -2.39 -0.02 -0.44 16 28 H 0.05 -0.23 8.14 -2.39 -0.02 -0.25 16 29 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 30 H 0.10 -0.50 7.90 -2.39 -0.02 -0.52 16 31 H 0.06 0.10 7.84 -2.38 -0.02 0.08 16 32 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 33 H 0.42 -4.04 8.47 -92.71 -0.79 -4.83 16 34 H 0.15 -1.29 8.12 -2.39 -0.02 -1.31 16 35 H 0.15 -1.10 8.14 -2.39 -0.02 -1.12 16 36 H 0.17 0.97 6.30 -2.91 -0.02 0.95 16 37 H 0.08 0.24 7.96 -2.38 -0.02 0.23 16 38 H 0.40 -2.76 8.74 -74.06 -0.65 -3.41 16 39 H -0.28 -1.47 7.04 99.48 0.70 -0.77 16 40 H -0.30 -2.58 7.11 99.48 0.71 -1.87 16 41 H 0.13 0.98 8.06 -2.91 -0.02 0.96 16 42 H 0.14 0.24 8.06 -2.91 -0.02 0.22 16 43 H 0.15 -0.01 8.06 -2.91 -0.02 -0.04 16 44 H 0.13 0.37 8.06 -2.91 -0.02 0.34 16 45 H 0.10 -0.45 8.10 -2.38 -0.02 -0.47 16 46 H 0.07 -0.07 8.14 -2.39 -0.02 -0.09 16 Total: 0.00 -29.13 386.82 -0.12 -29.25 By element: Atomic # 1 Polarization: -13.14 SS G_CDS: -0.41 Total: -13.54 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: 5.48 Total: 2.22 kcal Atomic # 7 Polarization: -1.72 SS G_CDS: -3.75 Total: -5.48 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: -3.55 Total: -15.38 kcal Atomic # 14 Polarization: 0.81 SS G_CDS: 2.11 Total: 2.93 kcal Total: -29.13 -0.12 -29.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12896214_9818708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.721 kcal (2) G-P(sol) polarization free energy of solvation -29.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds