Wall clock time and date at job start Tue Mar 9 2021 13:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86302 * 109.47542 * 2 1 4 4 C 1.50701 * 109.47253 * 120.00168 * 2 1 3 5 5 C 1.38359 * 120.34973 * 65.29791 * 4 2 1 6 6 C 1.40017 * 118.29216 * 180.26067 * 5 4 2 7 7 C 1.47836 * 120.56301 * 179.73482 * 6 5 4 8 8 O 1.21551 * 120.00182 * 359.72951 * 7 6 5 9 9 N 1.34784 * 120.00041 * 179.72538 * 7 6 5 10 10 C 1.46501 * 119.99667 * 185.08851 * 9 7 6 11 11 C 1.50703 * 112.84820 * 64.68486 * 10 9 7 12 12 C 1.38234 * 120.00190 * 16.10931 * 11 10 9 13 13 C 1.38231 * 119.99804 * 180.02562 * 12 11 10 14 14 C 1.38233 * 120.00247 * 359.97438 * 13 12 11 15 15 C 1.38233 * 119.99938 * 0.26274 * 14 13 12 16 16 C 1.38235 * 120.00015 * 359.48796 * 15 14 13 17 17 C 1.53777 * 113.61524 * 293.48700 * 10 9 7 18 18 C 1.53954 * 87.02000 * 270.77147 * 17 10 9 19 19 H 1.09002 * 113.61292 * 89.20021 * 18 17 10 20 20 F 1.39897 * 113.66923 * 220.06645 * 18 17 10 21 21 C 1.53780 * 113.61173 * 195.87886 * 10 9 7 22 22 C 1.39526 * 118.87963 * 359.46861 * 6 5 4 23 23 N 1.31693 * 120.56496 * 0.24292 * 22 6 5 24 24 C 1.31929 * 121.88224 * 0.02995 * 23 22 6 25 25 H 0.96704 * 114.00116 * 59.99479 * 1 2 3 26 26 H 1.09002 * 109.47211 * 240.00134 * 2 1 3 27 27 H 1.48497 * 109.99846 * 298.68296 * 3 2 1 28 28 H 1.48498 * 109.99985 * 59.99835 * 3 2 1 29 29 H 1.08005 * 120.85381 * 359.97438 * 5 4 2 30 30 H 0.96990 * 119.99940 * 5.08749 * 9 7 6 31 31 H 1.08001 * 119.99959 * 359.97438 * 12 11 10 32 32 H 1.08004 * 119.99865 * 179.97438 * 13 12 11 33 33 H 1.08007 * 120.00256 * 179.97438 * 14 13 12 34 34 H 1.08003 * 119.99743 * 179.71905 * 15 14 13 35 35 H 1.07997 * 120.00303 * 180.23872 * 16 15 14 36 36 H 1.08997 * 113.61878 * 25.35050 * 17 10 9 37 37 H 1.08999 * 113.61091 * 156.25411 * 17 10 9 38 38 H 1.09001 * 113.61182 * 203.75209 * 21 10 9 39 39 H 1.08998 * 113.61303 * 334.65226 * 21 10 9 40 40 H 1.08000 * 119.71878 * 180.27857 * 22 6 5 41 41 H 1.07996 * 119.45873 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.6939 -2.0626 1.4029 6 6 2.1754 -2.6780 2.5648 7 6 1.9452 -4.1187 2.8029 8 8 1.3291 -4.7785 1.9889 9 7 2.4185 -4.7008 3.9227 10 6 2.2884 -6.1483 4.1069 11 6 3.0764 -6.9401 3.0953 12 6 4.0650 -6.3224 2.3522 13 6 4.7874 -7.0486 1.4240 14 6 4.5217 -8.3925 1.2393 15 6 3.5299 -9.0090 1.9788 16 6 2.8109 -8.2841 2.9107 17 6 0.8333 -6.6214 4.2613 18 6 1.0042 -6.3926 5.7741 19 1 0.7485 -5.3826 6.0946 20 9 0.4050 -7.3807 6.5628 21 6 2.5114 -6.6072 5.5576 22 6 2.8810 -1.9097 3.4914 23 7 3.0865 -0.6263 3.2792 24 6 2.6401 -0.0188 2.1965 25 1 -0.3933 0.4418 -0.7650 26 1 1.7923 -0.5138 -0.8900 27 1 1.5880 2.4585 -1.2242 28 1 1.5616 2.4679 1.2085 29 1 1.1472 -2.6278 0.6625 30 1 2.8452 -4.1613 4.6065 31 1 4.2723 -5.2724 2.4963 32 1 5.5595 -6.5660 0.8432 33 1 5.0859 -8.9598 0.5137 34 1 3.3192 -10.0580 1.8312 35 1 2.0386 -8.7666 3.4913 36 1 0.1060 -5.9552 3.7974 37 1 0.6833 -7.6669 3.9921 38 1 2.8210 -7.6488 5.6433 39 1 3.1369 -5.9295 6.1385 40 1 3.2623 -2.3715 4.3901 41 1 2.8308 1.0357 2.0624 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12905100_13287814.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:13:05 Heat of formation + Delta-G solvation = -6.766584 kcal Electronic energy + Delta-G solvation = -27830.981591 eV Core-core repulsion = 23786.248910 eV Total energy + Delta-G solvation = -4044.732681 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -48.57581 -42.27332 -41.35979 -39.63652 -38.54667 -38.07351 -34.75488 -33.89720 -32.95439 -31.88189 -31.68963 -27.39194 -27.25886 -26.66303 -25.20914 -23.81863 -23.53058 -22.57870 -21.80731 -20.46772 -19.12144 -18.76383 -18.61684 -18.06176 -17.84851 -17.38037 -16.82952 -16.61508 -16.29627 -16.10283 -15.85698 -15.70415 -15.60222 -15.34903 -14.92545 -14.75327 -14.35981 -14.29129 -14.19549 -13.98758 -13.94953 -13.86207 -13.64298 -13.33366 -12.75696 -12.65119 -12.30459 -12.13195 -11.95165 -11.74765 -11.54751 -11.29715 -11.07263 -10.79114 -10.55747 -10.39659 -10.29854 -9.81315 -9.60655 -5.13202 -0.60971 -0.04260 0.39112 0.50702 1.06194 1.43606 1.64501 1.72144 1.80808 2.54639 2.72385 2.94832 3.06089 3.12647 3.16831 3.37536 3.45493 3.47468 3.56128 3.61012 3.68982 3.72046 3.96123 4.03540 4.04882 4.11832 4.15299 4.22269 4.35069 4.42856 4.48436 4.49308 4.59916 4.65348 4.78217 4.84781 4.88956 4.94510 5.03121 5.13015 5.24288 5.29227 5.55095 5.63102 5.66962 6.06996 6.19761 6.25764 6.59587 6.99094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.534 6.534 2 C -0.073 4.073 3 Si 0.683 3.317 4 C -0.131 4.131 5 C 0.014 3.986 6 C -0.190 4.190 7 C 0.569 3.431 8 O -0.509 6.509 9 N -0.711 5.711 10 C 0.197 3.803 11 C -0.072 4.072 12 C -0.102 4.102 13 C -0.117 4.117 14 C -0.118 4.118 15 C -0.116 4.116 16 C -0.110 4.110 17 C -0.156 4.156 18 C 0.066 3.934 19 H 0.111 0.889 20 F -0.202 7.202 21 C -0.151 4.151 22 C 0.139 3.861 23 N -0.476 5.476 24 C 0.131 3.869 25 H 0.384 0.616 26 H 0.083 0.917 27 H -0.254 1.254 28 H -0.249 1.249 29 H 0.151 0.849 30 H 0.404 0.596 31 H 0.115 0.885 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.125 0.875 35 H 0.124 0.876 36 H 0.092 0.908 37 H 0.109 0.891 38 H 0.114 0.886 39 H 0.091 0.909 40 H 0.161 0.839 41 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.176 1.895 -0.762 4.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.342 6.342 2 C -0.183 4.183 3 Si 0.583 3.417 4 C -0.133 4.133 5 C -0.013 4.013 6 C -0.195 4.195 7 C 0.355 3.645 8 O -0.383 6.383 9 N -0.364 5.364 10 C 0.110 3.890 11 C -0.074 4.074 12 C -0.121 4.121 13 C -0.135 4.135 14 C -0.136 4.136 15 C -0.134 4.134 16 C -0.128 4.128 17 C -0.195 4.195 18 C 0.030 3.970 19 H 0.129 0.871 20 F -0.182 7.182 21 C -0.189 4.189 22 C -0.020 4.020 23 N -0.183 5.183 24 C -0.025 4.025 25 H 0.233 0.767 26 H 0.101 0.899 27 H -0.179 1.179 28 H -0.174 1.174 29 H 0.169 0.831 30 H 0.241 0.759 31 H 0.133 0.867 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.142 0.858 36 H 0.111 0.889 37 H 0.127 0.873 38 H 0.132 0.868 39 H 0.110 0.890 40 H 0.178 0.822 41 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 4.062 2.413 -0.161 4.727 hybrid contribution -1.385 -0.372 -0.866 1.675 sum 2.677 2.040 -1.027 3.519 Atomic orbital electron populations 1.86586 1.17288 1.80279 1.50065 1.24703 0.84927 1.11248 0.97453 0.95115 0.91364 0.74119 0.81100 1.20293 1.00990 0.94480 0.97505 1.21602 0.91353 0.93320 0.94989 1.20978 1.05187 0.94882 0.98461 1.17973 0.78838 0.86337 0.81361 1.90849 1.38566 1.64277 1.44609 1.45578 1.62143 1.07075 1.21624 1.19628 0.95716 0.79663 0.93951 1.19506 0.96606 0.93841 0.97403 1.20863 0.95636 0.99536 0.96030 1.21144 0.99733 0.94487 0.98162 1.21212 0.97904 0.95000 0.99511 1.21145 0.96028 1.00072 0.96117 1.20942 0.99790 0.93320 0.98787 1.24105 0.96501 1.04401 0.94453 1.23161 0.92775 0.91031 0.90077 0.87147 1.92834 1.85085 1.64032 1.76285 1.24004 0.96608 1.04758 0.93484 1.23031 0.92192 0.89583 0.97220 1.67753 1.19680 1.10398 1.20495 1.22900 0.91568 1.00037 0.87953 0.76701 0.89889 1.17897 1.17394 0.83141 0.75896 0.86672 0.86029 0.85933 0.85739 0.85786 0.88905 0.87325 0.86755 0.89035 0.82158 0.81944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.12 12.82 -35.23 -0.45 -0.57 16 2 C -0.07 0.09 2.81 36.01 0.10 0.20 16 3 Si 0.68 -1.59 29.88 -169.99 -5.08 -6.67 16 4 C -0.13 -0.03 5.38 -104.54 -0.56 -0.59 16 5 C 0.01 0.02 9.38 -38.87 -0.36 -0.35 16 6 C -0.19 -0.07 5.89 -104.82 -0.62 -0.69 16 7 C 0.57 0.63 6.19 -12.33 -0.08 0.55 16 8 O -0.51 -2.42 14.93 5.32 0.08 -2.34 16 9 N -0.71 1.15 4.28 -48.86 -0.21 0.94 16 10 C 0.20 -0.12 0.92 -132.16 -0.12 -0.25 16 11 C -0.07 -0.08 4.68 -104.62 -0.49 -0.57 16 12 C -0.10 -0.15 8.82 -39.59 -0.35 -0.50 16 13 C -0.12 -0.15 10.05 -39.59 -0.40 -0.55 16 14 C -0.12 -0.12 10.05 -39.59 -0.40 -0.52 16 15 C -0.12 -0.11 10.05 -39.58 -0.40 -0.51 16 16 C -0.11 -0.11 8.86 -39.58 -0.35 -0.47 16 17 C -0.16 -0.04 6.68 -25.83 -0.17 -0.21 16 18 C 0.07 -0.05 5.58 -25.83 -0.14 -0.20 16 19 H 0.11 -0.26 8.14 -51.93 -0.42 -0.68 16 20 F -0.20 -0.42 17.41 2.25 0.04 -0.38 16 21 C -0.15 0.33 7.19 -25.92 -0.19 0.14 16 22 C 0.14 -0.13 10.71 -17.13 -0.18 -0.31 16 23 N -0.48 -0.34 10.35 -12.91 -0.13 -0.47 16 24 C 0.13 0.00 9.84 -17.47 -0.17 -0.17 16 25 H 0.38 -1.45 8.74 45.56 0.40 -1.05 16 26 H 0.08 -0.24 7.96 -51.93 -0.41 -0.66 16 27 H -0.25 0.06 7.11 56.52 0.40 0.47 16 28 H -0.25 -0.14 7.05 56.52 0.40 0.26 16 29 H 0.15 0.25 7.74 -52.48 -0.41 -0.16 16 30 H 0.40 -1.86 6.74 -40.82 -0.28 -2.13 16 31 H 0.12 0.06 6.76 -52.49 -0.35 -0.29 16 32 H 0.12 -0.04 8.06 -52.48 -0.42 -0.46 16 33 H 0.12 -0.08 8.06 -52.48 -0.42 -0.51 16 34 H 0.12 -0.10 8.06 -52.48 -0.42 -0.52 16 35 H 0.12 -0.05 6.37 -52.49 -0.33 -0.38 16 36 H 0.09 0.17 7.30 -51.93 -0.38 -0.21 16 37 H 0.11 0.02 6.08 -51.93 -0.32 -0.29 16 38 H 0.11 -0.22 7.88 -51.93 -0.41 -0.63 16 39 H 0.09 -0.37 8.09 -51.93 -0.42 -0.79 16 40 H 0.16 -0.70 6.44 -52.49 -0.34 -1.04 16 41 H 0.16 -0.32 4.87 -52.49 -0.26 -0.58 16 LS Contribution 344.18 15.07 5.19 5.19 Total: 0.00 -9.11 344.18 -9.85 -18.96 By element: Atomic # 1 Polarization: -5.27 SS G_CDS: -4.40 Total: -9.67 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: -4.88 Total: -4.98 kcal Atomic # 7 Polarization: 0.81 SS G_CDS: -0.34 Total: 0.47 kcal Atomic # 8 Polarization: -2.54 SS G_CDS: -0.37 Total: -2.91 kcal Atomic # 9 Polarization: -0.42 SS G_CDS: 0.04 Total: -0.38 kcal Atomic # 14 Polarization: -1.59 SS G_CDS: -5.08 Total: -6.67 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -9.11 -9.85 -18.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12905100_13287814.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.193 kcal (2) G-P(sol) polarization free energy of solvation -9.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds