Wall clock time and date at job start Tue Mar 9 2021 13:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86302 * 109.47542 * 2 1 4 4 C 1.50701 * 109.47253 * 120.00168 * 2 1 3 5 5 C 1.38359 * 120.34973 * 65.29791 * 4 2 1 6 6 C 1.40017 * 118.29216 * 180.26067 * 5 4 2 7 7 C 1.47836 * 120.56301 * 179.73482 * 6 5 4 8 8 O 1.21551 * 120.00182 * 359.72951 * 7 6 5 9 9 N 1.34784 * 120.00041 * 179.72538 * 7 6 5 10 10 C 1.46501 * 119.99667 * 185.08851 * 9 7 6 11 11 C 1.50703 * 112.84820 * 64.68486 * 10 9 7 12 12 C 1.38234 * 120.00190 * 16.10931 * 11 10 9 13 13 C 1.38231 * 119.99804 * 180.02562 * 12 11 10 14 14 C 1.38233 * 120.00247 * 359.97438 * 13 12 11 15 15 C 1.38233 * 119.99938 * 0.26274 * 14 13 12 16 16 C 1.38235 * 120.00015 * 359.48796 * 15 14 13 17 17 C 1.53777 * 113.61524 * 293.48700 * 10 9 7 18 18 C 1.53954 * 87.02000 * 270.77147 * 17 10 9 19 19 H 1.09002 * 113.61292 * 89.20021 * 18 17 10 20 20 F 1.39897 * 113.66923 * 220.06645 * 18 17 10 21 21 C 1.53780 * 113.61173 * 195.87886 * 10 9 7 22 22 C 1.39526 * 118.87963 * 359.46861 * 6 5 4 23 23 N 1.31693 * 120.56496 * 0.24292 * 22 6 5 24 24 C 1.31929 * 121.88224 * 0.02995 * 23 22 6 25 25 H 0.96704 * 114.00116 * 59.99479 * 1 2 3 26 26 H 1.09002 * 109.47211 * 240.00134 * 2 1 3 27 27 H 1.48497 * 109.99846 * 298.68296 * 3 2 1 28 28 H 1.48498 * 109.99985 * 59.99835 * 3 2 1 29 29 H 1.08005 * 120.85381 * 359.97438 * 5 4 2 30 30 H 0.96990 * 119.99940 * 5.08749 * 9 7 6 31 31 H 1.08001 * 119.99959 * 359.97438 * 12 11 10 32 32 H 1.08004 * 119.99865 * 179.97438 * 13 12 11 33 33 H 1.08007 * 120.00256 * 179.97438 * 14 13 12 34 34 H 1.08003 * 119.99743 * 179.71905 * 15 14 13 35 35 H 1.07997 * 120.00303 * 180.23872 * 16 15 14 36 36 H 1.08997 * 113.61878 * 25.35050 * 17 10 9 37 37 H 1.08999 * 113.61091 * 156.25411 * 17 10 9 38 38 H 1.09001 * 113.61182 * 203.75209 * 21 10 9 39 39 H 1.08998 * 113.61303 * 334.65226 * 21 10 9 40 40 H 1.08000 * 119.71878 * 180.27857 * 22 6 5 41 41 H 1.07996 * 119.45873 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.6939 -2.0626 1.4029 6 6 2.1754 -2.6780 2.5648 7 6 1.9452 -4.1187 2.8029 8 8 1.3291 -4.7785 1.9889 9 7 2.4185 -4.7008 3.9227 10 6 2.2884 -6.1483 4.1069 11 6 3.0764 -6.9401 3.0953 12 6 4.0650 -6.3224 2.3522 13 6 4.7874 -7.0486 1.4240 14 6 4.5217 -8.3925 1.2393 15 6 3.5299 -9.0090 1.9788 16 6 2.8109 -8.2841 2.9107 17 6 0.8333 -6.6214 4.2613 18 6 1.0042 -6.3926 5.7741 19 1 0.7485 -5.3826 6.0946 20 9 0.4050 -7.3807 6.5628 21 6 2.5114 -6.6072 5.5576 22 6 2.8810 -1.9097 3.4914 23 7 3.0865 -0.6263 3.2792 24 6 2.6401 -0.0188 2.1965 25 1 -0.3933 0.4418 -0.7650 26 1 1.7923 -0.5138 -0.8900 27 1 1.5880 2.4585 -1.2242 28 1 1.5616 2.4679 1.2085 29 1 1.1472 -2.6278 0.6625 30 1 2.8452 -4.1613 4.6065 31 1 4.2723 -5.2724 2.4963 32 1 5.5595 -6.5660 0.8432 33 1 5.0859 -8.9598 0.5137 34 1 3.3192 -10.0580 1.8312 35 1 2.0386 -8.7666 3.4913 36 1 0.1060 -5.9552 3.7974 37 1 0.6833 -7.6669 3.9921 38 1 2.8210 -7.6488 5.6433 39 1 3.1369 -5.9295 6.1385 40 1 3.2623 -2.3715 4.3901 41 1 2.8308 1.0357 2.0624 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12905100_13287814.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:13:03 Heat of formation + Delta-G solvation = -5.694301 kcal Electronic energy + Delta-G solvation = -27830.935093 eV Core-core repulsion = 23786.248910 eV Total energy + Delta-G solvation = -4044.686184 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -48.63320 -42.28133 -41.33504 -39.69736 -38.56394 -38.02319 -34.79137 -33.89516 -32.92748 -31.89872 -31.71758 -27.32362 -27.20019 -26.65669 -25.20446 -23.79629 -23.55820 -22.58686 -21.79751 -20.46547 -19.10150 -18.70725 -18.62549 -18.02983 -17.81642 -17.34707 -16.82167 -16.63105 -16.30010 -16.14344 -15.88959 -15.72372 -15.57069 -15.36222 -14.94180 -14.75673 -14.38319 -14.31199 -14.15040 -14.00894 -13.94478 -13.83528 -13.53316 -13.36707 -12.71527 -12.64846 -12.30349 -12.11996 -11.97459 -11.71962 -11.54214 -11.34149 -11.09710 -10.75335 -10.56025 -10.38553 -10.25033 -9.86805 -9.63992 -4.96397 -0.59807 -0.04132 0.35051 0.45132 1.20248 1.56911 1.61204 1.75202 1.92050 2.57144 2.71237 3.05362 3.14139 3.20916 3.22187 3.40361 3.51966 3.56673 3.60537 3.65551 3.73793 3.80194 3.98229 4.03832 4.10630 4.14877 4.21218 4.23880 4.46433 4.48604 4.56483 4.58234 4.63820 4.69127 4.79761 4.82561 4.90683 4.97876 5.01694 5.11554 5.28070 5.31459 5.51341 5.58573 5.63602 6.04683 6.28832 6.50349 6.63109 6.99882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.086 4.086 3 Si 0.769 3.231 4 C -0.137 4.137 5 C -0.001 4.001 6 C -0.196 4.196 7 C 0.572 3.428 8 O -0.552 6.552 9 N -0.693 5.693 10 C 0.198 3.802 11 C -0.080 4.080 12 C -0.116 4.116 13 C -0.130 4.130 14 C -0.130 4.130 15 C -0.126 4.126 16 C -0.123 4.123 17 C -0.163 4.163 18 C 0.065 3.935 19 H 0.129 0.871 20 F -0.219 7.219 21 C -0.137 4.137 22 C 0.146 3.854 23 N -0.492 5.492 24 C 0.128 3.872 25 H 0.399 0.601 26 H 0.099 0.901 27 H -0.281 1.281 28 H -0.288 1.288 29 H 0.137 0.863 30 H 0.421 0.579 31 H 0.121 0.879 32 H 0.134 0.866 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.133 0.867 36 H 0.073 0.927 37 H 0.104 0.896 38 H 0.113 0.887 39 H 0.120 0.880 40 H 0.196 0.804 41 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.353 2.420 0.122 5.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.370 6.370 2 C -0.195 4.195 3 Si 0.673 3.327 4 C -0.139 4.139 5 C -0.028 4.028 6 C -0.201 4.201 7 C 0.359 3.641 8 O -0.430 6.430 9 N -0.347 5.347 10 C 0.111 3.889 11 C -0.081 4.081 12 C -0.134 4.134 13 C -0.148 4.148 14 C -0.148 4.148 15 C -0.144 4.144 16 C -0.141 4.141 17 C -0.202 4.202 18 C 0.029 3.971 19 H 0.146 0.854 20 F -0.199 7.199 21 C -0.175 4.175 22 C -0.012 4.012 23 N -0.199 5.199 24 C -0.028 4.028 25 H 0.250 0.750 26 H 0.117 0.883 27 H -0.207 1.207 28 H -0.215 1.215 29 H 0.155 0.845 30 H 0.261 0.739 31 H 0.139 0.861 32 H 0.151 0.849 33 H 0.155 0.845 34 H 0.156 0.844 35 H 0.150 0.850 36 H 0.092 0.908 37 H 0.122 0.878 38 H 0.132 0.868 39 H 0.138 0.862 40 H 0.212 0.788 41 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 5.262 2.930 0.741 6.068 hybrid contribution -1.803 -0.539 -1.175 2.218 sum 3.459 2.391 -0.434 4.228 Atomic orbital electron populations 1.86539 1.18246 1.80897 1.51298 1.24998 0.84379 1.12525 0.97569 0.94148 0.89917 0.71270 0.77373 1.20447 1.01103 0.94166 0.98208 1.21639 0.91878 0.93911 0.95354 1.20966 1.05838 0.94556 0.98748 1.18092 0.78199 0.86450 0.81370 1.90831 1.40696 1.65203 1.46228 1.45416 1.61194 1.06924 1.21205 1.19611 0.94844 0.79791 0.94689 1.19712 0.96620 0.94105 0.97706 1.21035 0.96022 0.99946 0.96377 1.21401 1.00170 0.94833 0.98382 1.21467 0.98196 0.95228 0.99923 1.21418 0.96019 1.00928 0.96069 1.21158 1.00154 0.93642 0.99153 1.24112 0.96715 1.03773 0.95565 1.23352 0.93625 0.91312 0.88778 0.85365 1.92799 1.85544 1.64944 1.76654 1.23955 0.95931 1.05401 0.92179 1.23505 0.90985 0.89014 0.97705 1.67820 1.20244 1.11050 1.20817 1.23179 0.91154 1.00755 0.87711 0.75011 0.88273 1.20736 1.21521 0.84522 0.73903 0.86093 0.84855 0.84538 0.84378 0.84956 0.90846 0.87802 0.86830 0.86208 0.78753 0.80455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.67 12.82 -148.98 -1.91 -2.58 16 2 C -0.09 0.20 2.81 71.24 0.20 0.40 16 3 Si 0.77 -3.68 29.88 68.60 2.05 -1.63 16 4 C -0.14 -0.12 5.38 -19.81 -0.11 -0.23 16 5 C 0.00 0.00 9.38 22.73 0.21 0.21 16 6 C -0.20 -0.21 5.89 -20.00 -0.12 -0.33 16 7 C 0.57 1.61 6.19 86.78 0.54 2.15 16 8 O -0.55 -6.27 14.93 -3.88 -0.06 -6.32 16 9 N -0.69 2.61 4.28 -426.76 -1.82 0.78 16 10 C 0.20 -0.27 0.92 3.38 0.00 -0.27 16 11 C -0.08 -0.21 4.68 -19.86 -0.09 -0.31 16 12 C -0.12 -0.38 8.82 22.27 0.20 -0.18 16 13 C -0.13 -0.39 10.05 22.27 0.22 -0.17 16 14 C -0.13 -0.33 10.05 22.27 0.22 -0.10 16 15 C -0.13 -0.32 10.05 22.27 0.22 -0.09 16 16 C -0.12 -0.34 8.86 22.27 0.20 -0.15 16 17 C -0.16 -0.22 6.68 31.18 0.21 -0.02 16 18 C 0.07 -0.14 5.58 31.18 0.17 0.04 16 19 H 0.13 -0.75 8.14 -2.39 -0.02 -0.77 16 20 F -0.22 -0.90 17.41 44.97 0.78 -0.12 16 21 C -0.14 0.76 7.19 31.12 0.22 0.98 16 22 C 0.15 -0.40 10.71 85.02 0.91 0.51 16 23 N -0.49 -0.32 10.35 -194.75 -2.01 -2.34 16 24 C 0.13 -0.02 9.84 84.71 0.83 0.81 16 25 H 0.40 -2.75 8.74 -74.05 -0.65 -3.40 16 26 H 0.10 -0.58 7.96 -2.39 -0.02 -0.60 16 27 H -0.28 0.13 7.11 99.48 0.71 0.84 16 28 H -0.29 -0.46 7.05 99.48 0.70 0.24 16 29 H 0.14 0.78 7.74 -2.91 -0.02 0.76 16 30 H 0.42 -4.65 6.74 -92.72 -0.62 -5.27 16 31 H 0.12 0.13 6.76 -2.91 -0.02 0.12 16 32 H 0.13 -0.06 8.06 -2.91 -0.02 -0.08 16 33 H 0.14 -0.17 8.06 -2.91 -0.02 -0.20 16 34 H 0.14 -0.18 8.06 -2.91 -0.02 -0.20 16 35 H 0.13 0.02 6.37 -2.91 -0.02 0.00 16 36 H 0.07 0.40 7.30 -2.39 -0.02 0.38 16 37 H 0.10 0.20 6.08 -2.39 -0.01 0.18 16 38 H 0.11 -0.54 7.88 -2.39 -0.02 -0.56 16 39 H 0.12 -1.32 8.09 -2.39 -0.02 -1.34 16 40 H 0.20 -2.15 6.44 -2.91 -0.02 -2.17 16 41 H 0.18 -0.77 4.87 -2.91 -0.01 -0.79 16 Total: 0.00 -22.75 344.18 0.94 -21.81 By element: Atomic # 1 Polarization: -12.74 SS G_CDS: -0.14 Total: -12.87 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: 4.05 Total: 3.26 kcal Atomic # 7 Polarization: 2.29 SS G_CDS: -3.84 Total: -1.55 kcal Atomic # 8 Polarization: -6.93 SS G_CDS: -1.97 Total: -8.90 kcal Atomic # 9 Polarization: -0.90 SS G_CDS: 0.78 Total: -0.12 kcal Atomic # 14 Polarization: -3.68 SS G_CDS: 2.05 Total: -1.63 kcal Total: -22.75 0.94 -21.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12905100_13287814.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.116 kcal (2) G-P(sol) polarization free energy of solvation -22.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds