Wall clock time and date at job start Tue Mar 9 2021 13:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86304 * 109.46898 * 2 1 4 4 C 1.50697 * 109.47047 * 240.00360 * 2 1 3 5 5 C 1.33744 * 125.11897 * 300.02097 * 4 2 1 6 6 C 1.37797 * 115.08266 * 179.73559 * 5 4 2 7 7 C 1.34981 * 114.69941 * 0.49610 * 6 5 4 8 8 C 1.47558 * 125.27662 * 179.79697 * 7 6 5 9 9 C 1.39822 * 120.00295 * 179.72498 * 8 7 6 10 10 C 1.36557 * 120.00605 * 180.02562 * 9 8 7 11 11 C 1.39834 * 119.99673 * 359.97234 * 10 9 8 12 12 C 1.47566 * 119.99988 * 180.02562 * 11 10 9 13 13 O 1.21595 * 119.99549 * 0.02562 * 12 11 10 14 14 N 1.34772 * 119.99664 * 180.02562 * 12 11 10 15 15 C 1.46502 * 119.99508 * 185.40897 * 14 12 11 16 16 C 1.50697 * 112.91029 * 284.27740 * 15 14 12 17 17 C 1.38234 * 120.00275 * 166.65958 * 16 15 14 18 18 C 1.38232 * 120.00073 * 179.74206 * 17 16 15 19 19 C 1.38236 * 120.00133 * 0.53357 * 18 17 16 20 20 C 1.38233 * 119.99606 * 359.74134 * 19 18 17 21 21 C 1.38237 * 120.00566 * 359.97438 * 20 19 18 22 22 C 1.53790 * 113.61160 * 153.02617 * 15 14 12 23 23 C 1.53782 * 87.08206 * 270.88278 * 22 15 14 24 24 H 1.09001 * 113.61168 * 89.11458 * 23 22 15 25 25 F 1.39897 * 113.61583 * 220.01930 * 23 22 15 26 26 C 1.53781 * 113.61572 * 55.53077 * 15 14 12 27 27 C 1.39826 * 119.99998 * 0.27951 * 11 10 9 28 28 C 1.36564 * 119.99256 * 359.43892 * 27 11 10 29 29 S 1.75863 * 125.12055 * 120.02313 * 4 2 1 30 30 H 0.96701 * 114.00271 * 60.00137 * 1 2 3 31 31 H 1.08995 * 109.47144 * 120.00232 * 2 1 3 32 32 H 1.48499 * 110.00020 * 298.68220 * 3 2 1 33 33 H 1.48500 * 109.99798 * 60.00287 * 3 2 1 34 34 H 1.08000 * 122.45733 * 359.97438 * 5 4 2 35 35 H 1.08003 * 122.65546 * 180.29829 * 6 5 4 36 36 H 1.08005 * 119.99546 * 359.97438 * 9 8 7 37 37 H 1.08003 * 120.00119 * 179.97438 * 10 9 8 38 38 H 0.96995 * 120.00499 * 5.40803 * 14 12 11 39 39 H 1.08006 * 119.99867 * 0.02562 * 17 16 15 40 40 H 1.08001 * 120.00185 * 180.29719 * 18 17 16 41 41 H 1.07991 * 120.00204 * 179.76628 * 19 18 17 42 42 H 1.08005 * 120.00101 * 179.97438 * 20 19 18 43 43 H 1.07996 * 120.00550 * 180.02562 * 21 20 19 44 44 H 1.08998 * 113.61431 * 156.33493 * 22 15 14 45 45 H 1.08999 * 113.61237 * 25.43293 * 22 15 14 46 46 H 1.09007 * 113.61452 * 334.56810 * 26 15 14 47 47 H 1.09004 * 113.61506 * 203.66056 * 26 15 14 48 48 H 1.07996 * 120.00489 * 179.72816 * 27 11 10 49 49 H 1.08007 * 119.99573 * 180.27420 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 1.6717 -1.9845 -1.5432 6 6 2.2325 -2.4223 -2.7232 7 6 2.9672 -1.4970 -3.3760 8 6 3.6726 -1.7152 -4.6535 9 6 4.3998 -0.6735 -5.2374 10 6 5.0523 -0.8752 -6.4200 11 6 4.9935 -2.1238 -7.0468 12 6 5.6989 -2.3420 -8.3244 13 8 6.3317 -1.4361 -8.8318 14 7 5.6418 -3.5453 -8.9287 15 6 6.4365 -3.7984 -10.1331 16 6 5.8589 -3.1491 -11.3643 17 6 6.6172 -3.0546 -12.5162 18 6 6.0855 -2.4638 -13.6471 19 6 4.7994 -1.9576 -13.6229 20 6 4.0431 -2.0470 -12.4692 21 6 4.5727 -2.6431 -11.3400 22 6 6.8004 -5.2795 -10.3309 23 6 8.0600 -5.0005 -9.4939 24 1 7.9125 -5.1406 -8.4231 25 9 9.2060 -5.6431 -9.9745 26 6 7.9400 -3.5353 -9.9457 27 6 4.2619 -3.1640 -6.4656 28 6 3.6142 -2.9638 -5.2801 29 16 2.9471 0.0114 -2.4715 30 1 -0.3934 0.4417 -0.7651 31 1 1.7923 -0.5138 0.8899 32 1 1.5877 2.4586 -1.2242 33 1 1.5614 2.4679 1.2085 34 1 1.0638 -2.6223 -0.9186 35 1 2.0978 -3.4274 -3.0949 36 1 4.4449 0.2910 -4.7535 37 1 5.6137 -0.0703 -6.8711 38 1 5.0746 -4.2436 -8.5662 39 1 7.6235 -3.4465 -12.5340 40 1 6.6762 -2.3942 -14.5486 41 1 4.3853 -1.4926 -14.5053 42 1 3.0384 -1.6512 -12.4501 43 1 3.9817 -2.7134 -10.4388 44 1 7.0140 -5.5420 -11.3670 45 1 6.1029 -5.9680 -9.8539 46 1 8.1625 -2.8158 -9.1576 47 1 8.4651 -3.3211 -10.8765 48 1 4.2128 -4.1271 -6.9518 49 1 3.0527 -3.7686 -4.8289 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12905100_13308390.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:13:11 Heat of formation + Delta-G solvation = 17.654145 kcal Electronic energy + Delta-G solvation = -34804.118178 eV Core-core repulsion = 30091.042817 eV Total energy + Delta-G solvation = -4713.075361 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 410.114 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -48.62539 -42.10863 -40.70069 -39.65978 -39.07963 -38.41964 -37.46590 -34.71854 -33.32767 -32.27293 -31.90032 -31.72203 -30.43155 -27.43323 -27.14804 -25.95971 -24.69237 -23.97359 -23.63232 -23.33325 -22.54870 -21.81952 -20.40943 -20.27724 -19.27555 -18.65490 -18.61963 -17.69232 -17.33949 -17.05092 -16.73305 -16.60526 -16.34252 -16.19348 -16.13368 -16.08208 -15.85532 -15.67670 -15.48559 -15.23444 -14.95502 -14.53215 -14.46905 -14.37159 -14.27506 -14.01594 -13.91945 -13.79965 -13.63046 -13.54350 -13.40412 -13.22453 -13.08128 -12.59608 -12.54027 -12.42544 -12.30519 -12.08030 -11.96092 -11.74157 -11.52105 -11.47033 -11.05337 -10.87218 -10.64850 -10.31035 -10.18208 -9.86887 -9.64077 -9.55160 -9.03120 -5.09330 -0.88786 0.25341 0.34624 0.35286 0.39329 0.45147 0.76573 1.19960 1.51751 1.56160 1.83884 1.85894 1.95693 2.71471 2.82565 3.16285 3.22711 3.30111 3.39355 3.41806 3.51743 3.64535 3.70454 3.75132 3.81552 3.85064 3.99981 4.04939 4.15444 4.20697 4.23003 4.32636 4.41424 4.50014 4.52025 4.56189 4.57424 4.58930 4.62801 4.66188 4.70524 4.83215 4.92824 4.99400 5.01584 5.02356 5.11212 5.12571 5.22780 5.29176 5.32883 5.33110 5.48861 5.51814 5.58494 5.65808 5.73823 6.04939 6.36761 6.39689 7.10473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.539 6.539 2 C -0.033 4.033 3 Si 0.708 3.292 4 C -0.219 4.219 5 C -0.110 4.110 6 C -0.116 4.116 7 C -0.160 4.160 8 C 0.007 3.993 9 C -0.129 4.129 10 C -0.063 4.063 11 C -0.149 4.149 12 C 0.563 3.437 13 O -0.560 6.560 14 N -0.694 5.694 15 C 0.197 3.803 16 C -0.082 4.082 17 C -0.123 4.123 18 C -0.126 4.126 19 C -0.131 4.131 20 C -0.132 4.132 21 C -0.115 4.115 22 C -0.137 4.137 23 C 0.066 3.934 24 H 0.128 0.872 25 F -0.219 7.219 26 C -0.162 4.162 27 C -0.067 4.067 28 C -0.108 4.108 29 S 0.120 5.880 30 H 0.388 0.612 31 H 0.140 0.860 32 H -0.267 1.267 33 H -0.273 1.273 34 H 0.154 0.846 35 H 0.167 0.833 36 H 0.132 0.868 37 H 0.127 0.873 38 H 0.420 0.580 39 H 0.133 0.867 40 H 0.139 0.861 41 H 0.136 0.864 42 H 0.132 0.868 43 H 0.121 0.879 44 H 0.112 0.888 45 H 0.118 0.882 46 H 0.075 0.925 47 H 0.103 0.897 48 H 0.165 0.835 49 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.349 -4.953 1.532 5.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.347 6.347 2 C -0.145 4.145 3 Si 0.611 3.389 4 C -0.336 4.336 5 C -0.141 4.141 6 C -0.146 4.146 7 C -0.277 4.277 8 C 0.005 3.995 9 C -0.148 4.148 10 C -0.082 4.082 11 C -0.152 4.152 12 C 0.352 3.648 13 O -0.439 6.439 14 N -0.348 5.348 15 C 0.109 3.891 16 C -0.083 4.083 17 C -0.141 4.141 18 C -0.144 4.144 19 C -0.149 4.149 20 C -0.150 4.150 21 C -0.134 4.134 22 C -0.175 4.175 23 C 0.030 3.970 24 H 0.146 0.854 25 F -0.199 7.199 26 C -0.200 4.200 27 C -0.085 4.085 28 C -0.128 4.128 29 S 0.388 5.612 30 H 0.237 0.763 31 H 0.157 0.843 32 H -0.192 1.192 33 H -0.198 1.198 34 H 0.172 0.828 35 H 0.184 0.816 36 H 0.150 0.850 37 H 0.145 0.855 38 H 0.261 0.739 39 H 0.151 0.849 40 H 0.156 0.844 41 H 0.154 0.846 42 H 0.150 0.850 43 H 0.139 0.861 44 H 0.130 0.870 45 H 0.136 0.864 46 H 0.094 0.906 47 H 0.121 0.879 48 H 0.182 0.818 49 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -1.352 -2.347 1.549 3.120 hybrid contribution -1.749 -1.139 -0.208 2.098 sum -3.102 -3.486 1.341 4.855 Atomic orbital electron populations 1.86599 1.17810 1.80182 1.50133 1.24443 0.83358 1.10015 0.96719 0.94479 0.91054 0.73950 0.79450 1.25090 1.07092 0.99228 1.02198 1.20195 1.01297 0.94887 0.97685 1.20637 0.97718 1.01358 0.94892 1.23185 1.06604 0.98113 0.99769 1.18459 0.95034 0.94661 0.91314 1.21018 0.98386 0.99289 0.96113 1.20921 0.96589 0.96544 0.94126 1.19977 1.03135 0.96181 0.95928 1.18405 0.79994 0.82080 0.84304 1.90822 1.43657 1.43144 1.66229 1.45414 1.47349 1.14919 1.27160 1.19601 0.90042 0.96394 0.83028 1.19808 0.94536 0.99517 0.94481 1.21158 1.00099 1.00122 0.92735 1.21414 0.95997 0.98135 0.98868 1.21458 0.94859 0.99765 0.98783 1.21405 1.00740 0.99439 0.93376 1.21047 0.95421 0.98404 0.98481 1.23950 0.96677 0.93697 1.03195 1.23302 0.81875 0.91669 1.00107 0.85414 1.92798 1.53637 1.83381 1.90116 1.24044 0.95110 0.96970 1.03883 1.21278 0.93697 0.98695 0.94850 1.21201 0.99987 0.96331 0.95289 1.84239 1.48897 1.13035 1.15044 0.76284 0.84276 1.19206 1.19800 0.82823 0.81551 0.85032 0.85479 0.73950 0.84944 0.84354 0.84599 0.85001 0.86070 0.86965 0.86371 0.90646 0.87912 0.81759 0.82203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.33 12.86 -148.98 -1.92 -2.24 16 2 C -0.03 0.07 2.96 71.23 0.21 0.28 16 3 Si 0.71 -1.08 30.96 68.60 2.12 1.04 16 4 C -0.22 0.31 5.73 24.66 0.14 0.45 16 5 C -0.11 0.24 10.00 21.14 0.21 0.45 16 6 C -0.12 0.38 9.64 21.42 0.21 0.58 16 7 C -0.16 0.16 6.37 23.98 0.15 0.32 16 8 C 0.01 -0.01 5.88 -20.05 -0.12 -0.13 16 9 C -0.13 -0.09 9.54 22.26 0.21 0.12 16 10 C -0.06 -0.16 9.53 22.26 0.21 0.06 16 11 C -0.15 0.01 5.88 -20.05 -0.12 -0.11 16 12 C 0.56 1.51 6.66 86.71 0.58 2.09 16 13 O -0.56 -6.47 14.72 -4.02 -0.06 -6.53 16 14 N -0.69 2.61 3.99 -427.01 -1.70 0.90 16 15 C 0.20 -0.22 0.95 3.39 0.00 -0.22 16 16 C -0.08 -0.24 4.99 -19.87 -0.10 -0.34 16 17 C -0.12 -0.36 8.72 22.27 0.19 -0.17 16 18 C -0.13 -0.34 10.05 22.27 0.22 -0.12 16 19 C -0.13 -0.38 10.05 22.27 0.22 -0.16 16 20 C -0.13 -0.47 10.05 22.27 0.22 -0.25 16 21 C -0.12 -0.44 9.16 22.27 0.20 -0.23 16 22 C -0.14 0.74 7.20 31.12 0.22 0.96 16 23 C 0.07 -0.13 5.58 31.12 0.17 0.04 16 24 H 0.13 -0.72 8.14 -2.39 -0.02 -0.74 16 25 F -0.22 -0.90 17.41 44.97 0.78 -0.11 16 26 C -0.16 -0.28 6.58 31.12 0.20 -0.08 16 27 C -0.07 0.43 9.48 22.26 0.21 0.64 16 28 C -0.11 0.61 9.48 22.26 0.21 0.82 16 29 S 0.12 -0.10 19.46 -56.49 -1.10 -1.20 16 30 H 0.39 -1.75 8.70 -74.06 -0.64 -2.40 16 31 H 0.14 -0.61 7.96 -2.39 -0.02 -0.63 16 32 H -0.27 -0.71 7.11 99.48 0.71 0.00 16 33 H -0.27 -1.28 7.11 99.48 0.71 -0.57 16 34 H 0.15 -0.62 8.06 -2.91 -0.02 -0.64 16 35 H 0.17 -1.40 6.88 -2.91 -0.02 -1.42 16 36 H 0.13 -0.08 7.26 -2.91 -0.02 -0.10 16 37 H 0.13 0.57 7.64 -2.91 -0.02 0.55 16 38 H 0.42 -4.62 6.78 -92.71 -0.63 -5.25 16 39 H 0.13 0.02 6.53 -2.91 -0.02 0.01 16 40 H 0.14 -0.16 8.06 -2.91 -0.02 -0.18 16 41 H 0.14 -0.11 8.06 -2.92 -0.02 -0.14 16 42 H 0.13 0.04 8.06 -2.91 -0.02 0.02 16 43 H 0.12 0.21 6.96 -2.91 -0.02 0.19 16 44 H 0.11 -0.52 7.79 -2.39 -0.02 -0.53 16 45 H 0.12 -1.28 8.13 -2.39 -0.02 -1.30 16 46 H 0.07 0.45 6.71 -2.38 -0.02 0.43 16 47 H 0.10 0.24 6.21 -2.38 -0.01 0.23 16 48 H 0.17 -2.32 6.40 -2.91 -0.02 -2.34 16 49 H 0.16 -1.76 6.74 -2.91 -0.02 -1.78 16 Total: 0.00 -21.31 419.12 1.62 -19.69 By element: Atomic # 1 Polarization: -16.37 SS G_CDS: -0.20 Total: -16.57 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: 3.69 Total: 5.01 kcal Atomic # 7 Polarization: 2.61 SS G_CDS: -1.70 Total: 0.90 kcal Atomic # 8 Polarization: -6.79 SS G_CDS: -1.97 Total: -8.77 kcal Atomic # 9 Polarization: -0.90 SS G_CDS: 0.78 Total: -0.11 kcal Atomic # 14 Polarization: -1.08 SS G_CDS: 2.12 Total: 1.04 kcal Atomic # 16 Polarization: -0.10 SS G_CDS: -1.10 Total: -1.20 kcal Total: -21.31 1.62 -19.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12905100_13308390.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.344 kcal (2) G-P(sol) polarization free energy of solvation -21.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds