Wall clock time and date at job start Tue Mar 9 2021 13:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86308 * 109.47091 * 2 1 4 4 C 1.50701 * 109.47535 * 240.00227 * 2 1 3 5 5 C 1.38261 * 119.94648 * 119.72081 * 4 2 1 6 6 C 1.38147 * 120.05452 * 179.72669 * 5 4 2 7 7 C 1.38728 * 119.94705 * 0.55076 * 6 5 4 8 8 O 1.35901 * 120.06175 * 179.74604 * 7 6 5 9 9 C 1.42900 * 116.99726 * 359.97438 * 8 7 6 10 10 C 1.50699 * 109.47230 * 179.97438 * 9 8 7 11 11 C 1.36417 * 125.79814 * 90.00165 * 10 9 8 12 12 C 1.47373 * 127.19442 * 0.03733 * 11 10 9 13 13 O 1.21619 * 119.99906 * 359.97438 * 12 11 10 14 14 N 1.34774 * 120.00244 * 179.97438 * 12 11 10 15 15 C 1.46504 * 120.00234 * 175.04849 * 14 12 11 16 16 C 1.50695 * 112.85025 * 291.22266 * 15 14 12 17 17 C 1.38240 * 120.00061 * 346.61628 * 16 15 14 18 18 C 1.38236 * 119.99874 * 179.76629 * 17 16 15 19 19 C 1.38232 * 119.99997 * 0.48592 * 18 17 16 20 20 C 1.38232 * 119.99950 * 359.79320 * 19 18 17 21 21 C 1.38230 * 120.00231 * 359.95570 * 20 19 18 22 22 C 1.53782 * 113.61406 * 159.91412 * 15 14 12 23 23 C 1.53778 * 87.08030 * 270.88416 * 22 15 14 24 24 H 1.09006 * 113.69213 * 89.12388 * 23 22 15 25 25 F 1.39897 * 113.61665 * 220.01754 * 23 22 15 26 26 C 1.53776 * 87.08319 * 334.56977 * 23 22 15 27 27 C 1.47017 * 105.61357 * 180.02562 * 11 10 9 28 28 C 1.34180 * 105.95534 * 359.97438 * 27 11 10 29 29 O 1.33652 * 125.80121 * 269.69820 * 10 9 8 30 30 C 1.38738 * 119.88299 * 359.72678 * 7 6 5 31 31 C 1.38139 * 119.94661 * 359.97438 * 30 7 6 32 32 H 0.96703 * 114.00037 * 59.99987 * 1 2 3 33 33 H 1.08999 * 109.47658 * 119.99928 * 2 1 3 34 34 H 1.48498 * 109.99683 * 60.00001 * 3 2 1 35 35 H 1.48495 * 109.99985 * 181.32203 * 3 2 1 36 36 H 1.08002 * 119.97496 * 359.97438 * 5 4 2 37 37 H 1.08002 * 120.02915 * 180.28043 * 6 5 4 38 38 H 1.08996 * 109.47041 * 300.00404 * 9 8 7 39 39 H 1.09007 * 109.46826 * 60.00416 * 9 8 7 40 40 H 0.96999 * 119.99572 * 355.05454 * 14 12 11 41 41 H 1.08001 * 119.99935 * 0.02562 * 17 16 15 42 42 H 1.08000 * 119.99853 * 180.25648 * 18 17 16 43 43 H 1.08007 * 119.99991 * 179.76305 * 19 18 17 44 44 H 1.08009 * 119.99767 * 179.97438 * 20 19 18 45 45 H 1.07998 * 120.00350 * 180.02562 * 21 20 19 46 46 H 1.09002 * 113.61450 * 25.43320 * 22 15 14 47 47 H 1.08994 * 113.61416 * 156.33864 * 22 15 14 48 48 H 1.09000 * 113.61808 * 270.88181 * 26 23 22 49 49 H 1.08999 * 113.69568 * 139.99117 * 26 23 22 50 50 H 1.08003 * 127.02311 * 179.97438 * 27 11 10 51 51 H 1.08007 * 125.43867 * 180.02562 * 28 27 11 52 52 H 1.08001 * 120.02357 * 179.97438 * 30 7 6 53 53 H 1.08000 * 119.97288 * 180.02562 * 31 30 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7103 -1.2305 5 6 2.7215 -0.0356 -2.1427 6 6 3.1879 -0.6862 -3.2685 7 6 2.8536 -2.0144 -3.4893 8 8 3.3070 -2.6552 -4.5987 9 6 4.1233 -1.8999 -5.4960 10 6 4.5292 -2.7690 -6.6583 11 6 3.8407 -2.9106 -7.8275 12 6 2.5744 -2.2556 -8.2006 13 8 2.0321 -1.4932 -7.4235 14 7 2.0172 -2.5014 -9.4029 15 6 0.7059 -1.9369 -9.7318 16 6 -0.4127 -2.5486 -8.9284 17 6 -0.1933 -3.7089 -8.2097 18 6 -1.2181 -4.2673 -7.4689 19 6 -2.4651 -3.6709 -7.4547 20 6 -2.6861 -2.5138 -8.1780 21 6 -1.6599 -1.9526 -8.9147 22 6 0.4217 -1.8784 -11.2420 23 6 1.0772 -0.4874 -11.2317 24 1 2.1544 -0.5096 -11.3971 25 9 0.4225 0.4468 -12.0415 26 6 0.6836 -0.3994 -9.7478 27 6 4.6263 -3.8529 -8.6376 28 6 5.6923 -4.1810 -7.8917 29 8 5.6278 -3.5276 -6.7211 30 6 2.0559 -2.6875 -2.5753 31 6 1.5971 -2.0342 -1.4479 32 1 -0.3933 0.4417 -0.7651 33 1 1.7924 -0.5138 0.8900 34 1 1.5614 2.4679 1.2085 35 1 3.5345 1.7704 -0.0322 36 1 2.9775 0.9998 -1.9729 37 1 3.8088 -0.1601 -3.9785 38 1 3.5614 -1.0410 -5.8629 39 1 5.0148 -1.5542 -4.9726 40 1 2.4844 -3.0522 -10.0504 41 1 0.7800 -4.1768 -8.2237 42 1 -1.0455 -5.1715 -6.9041 43 1 -3.2668 -4.1093 -6.8789 44 1 -3.6605 -2.0481 -8.1672 45 1 -1.8324 -1.0483 -9.4794 46 1 0.9761 -2.6181 -11.8197 47 1 -0.6404 -1.8587 -11.4860 48 1 -0.3069 0.0247 -9.5831 49 1 1.4485 0.0549 -9.1179 50 1 4.3930 -4.2085 -9.6304 51 1 6.4792 -4.8589 -8.1879 52 1 1.7939 -3.7214 -2.7451 53 1 0.9764 -2.5579 -0.7359 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12905100_4549634.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:14:34 Heat of formation + Delta-G solvation = -32.118030 kcal Electronic energy + Delta-G solvation = -41523.186570 eV Core-core repulsion = 36209.662435 eV Total energy + Delta-G solvation = -5313.524135 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 424.156 amu Computer time = 2.22 seconds Orbital eigenvalues (eV) -48.61409 -43.73479 -41.88264 -41.31429 -39.76939 -39.23922 -38.50883 -37.19455 -34.74587 -33.71439 -32.83715 -32.00172 -31.92578 -31.73220 -31.39922 -28.03656 -27.14472 -26.36289 -26.02392 -24.59698 -23.83176 -23.54964 -22.66829 -22.41850 -22.19548 -21.03201 -20.29745 -19.52811 -19.22241 -18.57988 -18.27503 -17.45590 -17.32880 -17.22754 -17.05383 -16.88247 -16.80732 -16.61918 -16.37111 -16.00923 -15.97948 -15.84169 -15.68038 -15.62538 -15.50421 -15.11828 -14.73903 -14.62480 -14.37313 -14.35926 -14.23185 -13.99848 -13.93654 -13.87448 -13.64799 -13.54743 -13.51984 -13.33117 -13.08617 -12.60297 -12.30139 -12.26320 -12.12622 -12.08256 -11.95992 -11.76761 -11.70916 -11.46880 -11.07888 -10.94750 -10.43333 -10.30152 -10.08653 -9.86691 -9.85033 -9.63313 -9.25765 -5.00774 -0.04312 0.24375 0.26681 0.35600 0.45330 1.03114 1.31580 1.48771 1.61376 1.92498 1.94179 2.08461 2.45692 2.62303 2.72170 3.17075 3.23813 3.33288 3.41990 3.48473 3.52918 3.62478 3.66465 3.70098 3.78115 3.81516 3.88809 3.92666 3.99875 4.04276 4.10098 4.15936 4.22863 4.26447 4.39461 4.45135 4.48486 4.50920 4.55625 4.58488 4.62276 4.63449 4.67835 4.71156 4.79961 4.86336 4.92317 5.00051 5.02796 5.11491 5.12881 5.22283 5.26490 5.34098 5.44765 5.51925 5.58824 5.65723 5.66301 5.88135 6.04928 6.23561 6.39884 6.75861 7.09748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.069 4.069 3 Si 0.771 3.229 4 C -0.160 4.160 5 C -0.077 4.077 6 C -0.205 4.205 7 C 0.126 3.874 8 O -0.321 6.321 9 C 0.134 3.866 10 C 0.041 3.959 11 C -0.221 4.221 12 C 0.591 3.409 13 O -0.549 6.549 14 N -0.692 5.692 15 C 0.199 3.801 16 C -0.080 4.080 17 C -0.115 4.115 18 C -0.132 4.132 19 C -0.129 4.129 20 C -0.124 4.124 21 C -0.120 4.120 22 C -0.139 4.139 23 C 0.067 3.933 24 H 0.127 0.873 25 F -0.218 7.218 26 C -0.159 4.159 27 C -0.195 4.195 28 C -0.014 4.014 29 O -0.179 6.179 30 C -0.162 4.162 31 C -0.058 4.058 32 H 0.394 0.606 33 H 0.107 0.893 34 H -0.298 1.298 35 H -0.283 1.283 36 H 0.149 0.851 37 H 0.148 0.852 38 H 0.110 0.890 39 H 0.097 0.903 40 H 0.420 0.580 41 H 0.114 0.886 42 H 0.127 0.873 43 H 0.136 0.864 44 H 0.141 0.859 45 H 0.135 0.865 46 H 0.115 0.885 47 H 0.113 0.887 48 H 0.103 0.897 49 H 0.078 0.922 50 H 0.194 0.806 51 H 0.250 0.750 52 H 0.131 0.869 53 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.889 -1.795 -6.585 7.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.179 4.179 3 Si 0.678 3.322 4 C -0.161 4.161 5 C -0.094 4.094 6 C -0.224 4.224 7 C 0.081 3.919 8 O -0.236 6.236 9 C 0.060 3.940 10 C -0.012 4.012 11 C -0.225 4.225 12 C 0.379 3.621 13 O -0.428 6.428 14 N -0.345 5.345 15 C 0.111 3.889 16 C -0.082 4.082 17 C -0.133 4.133 18 C -0.150 4.150 19 C -0.147 4.147 20 C -0.142 4.142 21 C -0.138 4.138 22 C -0.177 4.177 23 C 0.031 3.969 24 H 0.145 0.855 25 F -0.199 7.199 26 C -0.197 4.197 27 C -0.214 4.214 28 C -0.079 4.079 29 O -0.075 6.075 30 C -0.181 4.181 31 C -0.076 4.076 32 H 0.244 0.756 33 H 0.124 0.876 34 H -0.226 1.226 35 H -0.210 1.210 36 H 0.166 0.834 37 H 0.165 0.835 38 H 0.128 0.872 39 H 0.115 0.885 40 H 0.258 0.742 41 H 0.132 0.868 42 H 0.145 0.855 43 H 0.154 0.846 44 H 0.158 0.842 45 H 0.153 0.847 46 H 0.133 0.867 47 H 0.131 0.869 48 H 0.122 0.878 49 H 0.097 0.903 50 H 0.211 0.789 51 H 0.266 0.734 52 H 0.149 0.851 53 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.244 -1.190 -4.954 6.040 hybrid contribution 0.306 -0.918 -0.013 0.968 sum 3.550 -2.109 -4.967 6.459 Atomic orbital electron populations 1.86452 1.17381 1.82181 1.50432 1.25115 0.85165 1.10710 0.96888 0.93725 0.77966 0.75662 0.84892 1.20346 1.01934 0.95440 0.98361 1.21017 0.95729 0.99887 0.92777 1.21409 1.06008 0.93794 1.01146 1.19147 0.94556 0.91846 0.86333 1.86051 1.65241 1.40586 1.31703 1.21150 0.95297 0.91369 0.86181 1.22026 0.86982 0.96049 0.96133 1.21339 0.98492 1.05717 0.97000 1.17307 0.83042 0.80262 0.81447 1.90809 1.63740 1.36868 1.51367 1.45281 1.18907 1.53723 1.16577 1.19587 0.81426 0.92950 0.94902 1.19761 0.94434 0.95466 0.98508 1.20984 0.98956 0.96087 0.97287 1.21359 0.93679 1.00654 0.99310 1.21439 0.97448 0.96323 0.99508 1.21418 0.99886 0.96089 0.96822 1.21147 0.92430 1.00236 1.00025 1.23959 1.04404 0.96954 0.92374 1.23286 0.97966 0.87031 0.88611 0.85494 1.92799 1.83425 1.68300 1.75385 1.24040 1.04380 0.95260 0.96045 1.23266 0.95233 1.00105 1.02801 1.24900 1.02202 0.98417 0.82390 1.83799 1.38590 1.46983 1.38116 1.20607 1.01225 1.01355 0.94919 1.20924 0.97018 0.93913 0.95778 0.75601 0.87555 1.22573 1.20966 0.83351 0.83450 0.87195 0.88540 0.74169 0.86760 0.85489 0.84643 0.84156 0.84688 0.86683 0.86879 0.87849 0.90322 0.78930 0.73418 0.85060 0.84410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.32 12.77 -148.98 -1.90 -3.23 16 2 C -0.07 -0.11 2.82 71.24 0.20 0.09 16 3 Si 0.77 -0.45 29.78 68.60 2.04 1.59 16 4 C -0.16 -0.50 5.39 -19.85 -0.11 -0.60 16 5 C -0.08 -0.14 8.66 22.25 0.19 0.05 16 6 C -0.21 -0.75 9.04 22.37 0.20 -0.55 16 7 C 0.13 0.93 6.69 22.51 0.15 1.09 16 8 O -0.32 -2.82 10.12 -92.44 -0.94 -3.76 16 9 C 0.13 0.54 4.74 71.24 0.34 0.88 16 10 C 0.04 0.15 7.00 25.26 0.18 0.33 16 11 C -0.22 -0.32 6.31 -18.99 -0.12 -0.44 16 12 C 0.59 1.90 6.31 86.65 0.55 2.44 16 13 O -0.55 -5.48 13.26 -4.09 -0.05 -5.53 16 14 N -0.69 2.04 4.23 -427.20 -1.81 0.23 16 15 C 0.20 -0.23 0.94 3.38 0.00 -0.22 16 16 C -0.08 -0.26 4.89 -19.87 -0.10 -0.36 16 17 C -0.11 -0.58 8.98 22.27 0.20 -0.38 16 18 C -0.13 -0.65 10.05 22.27 0.22 -0.43 16 19 C -0.13 -0.46 10.05 22.27 0.22 -0.23 16 20 C -0.12 -0.33 10.05 22.27 0.22 -0.11 16 21 C -0.12 -0.33 8.71 22.27 0.19 -0.13 16 22 C -0.14 0.73 7.19 31.12 0.22 0.95 16 23 C 0.07 -0.17 5.58 31.12 0.17 0.01 16 24 H 0.13 -0.77 8.14 -2.38 -0.02 -0.79 16 25 F -0.22 -0.76 17.41 44.97 0.78 0.02 16 26 C -0.16 -0.12 6.62 31.12 0.21 0.09 16 27 C -0.20 1.10 10.60 23.65 0.25 1.35 16 28 C -0.01 0.08 12.03 66.89 0.80 0.88 16 29 O -0.18 -0.29 10.52 4.46 0.05 -0.24 16 30 C -0.16 -1.12 9.99 22.37 0.22 -0.90 16 31 C -0.06 -0.28 9.60 22.25 0.21 -0.07 16 32 H 0.39 -2.02 8.70 -74.06 -0.64 -2.66 16 33 H 0.11 0.26 7.96 -2.39 -0.02 0.24 16 34 H -0.30 -1.98 7.11 99.48 0.71 -1.27 16 35 H -0.28 -1.00 7.11 99.48 0.71 -0.29 16 36 H 0.15 -0.44 4.87 -2.91 -0.01 -0.46 16 37 H 0.15 -0.08 6.30 -2.91 -0.02 -0.09 16 38 H 0.11 0.51 6.01 -2.39 -0.01 0.49 16 39 H 0.10 -0.01 7.66 -2.38 -0.02 -0.03 16 40 H 0.42 -3.94 7.87 -92.71 -0.73 -4.67 16 41 H 0.11 0.49 6.73 -2.91 -0.02 0.47 16 42 H 0.13 0.31 8.06 -2.91 -0.02 0.29 16 43 H 0.14 -0.02 8.06 -2.91 -0.02 -0.04 16 44 H 0.14 -0.20 8.06 -2.91 -0.02 -0.23 16 45 H 0.14 -0.07 6.55 -2.91 -0.02 -0.08 16 46 H 0.11 -1.16 8.10 -2.39 -0.02 -1.18 16 47 H 0.11 -0.52 7.79 -2.39 -0.02 -0.54 16 48 H 0.10 0.12 6.22 -2.39 -0.01 0.11 16 49 H 0.08 0.33 6.95 -2.39 -0.02 0.31 16 50 H 0.19 -2.52 7.75 -2.91 -0.02 -2.54 16 51 H 0.25 -3.55 8.06 -2.91 -0.02 -3.57 16 52 H 0.13 0.77 8.06 -2.91 -0.02 0.74 16 53 H 0.14 0.43 8.06 -2.91 -0.02 0.41 16 Total: 0.00 -25.04 440.49 2.49 -22.55 By element: Atomic # 1 Polarization: -15.05 SS G_CDS: -0.33 Total: -15.38 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: 4.65 Total: 3.75 kcal Atomic # 7 Polarization: 2.04 SS G_CDS: -1.81 Total: 0.23 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: -2.84 Total: -12.76 kcal Atomic # 9 Polarization: -0.76 SS G_CDS: 0.78 Total: 0.02 kcal Atomic # 14 Polarization: -0.45 SS G_CDS: 2.04 Total: 1.59 kcal Total: -25.04 2.49 -22.55 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12905100_4549634.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.564 kcal (2) G-P(sol) polarization free energy of solvation -25.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.22 seconds