Wall clock time and date at job start Tue Mar 9 2021 13:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35975 * 117.00102 * 2 1 4 4 C 1.38679 * 119.99945 * 179.97438 * 3 2 1 5 5 C 1.38156 * 120.00064 * 180.02562 * 4 3 2 6 6 C 1.50696 * 120.00134 * 180.02562 * 5 4 3 7 7 O 1.42899 * 109.47219 * 104.97348 * 6 5 4 8 8 Si 1.86299 * 109.47060 * 344.97530 * 6 5 4 9 9 C 1.38684 * 119.99867 * 359.97438 * 5 4 3 10 10 O 1.35974 * 120.00040 * 180.02562 * 9 5 4 11 11 C 1.42893 * 117.00333 * 180.02562 * 10 9 5 12 12 C 1.50697 * 109.47613 * 179.97438 * 11 10 9 13 13 O 1.21284 * 119.99781 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00289 * 180.02562 * 12 11 10 15 15 C 1.46504 * 120.00066 * 184.77484 * 14 12 11 16 16 C 1.50695 * 112.84709 * 305.02016 * 15 14 12 17 17 C 1.38243 * 120.00014 * 336.05258 * 16 15 14 18 18 C 1.38235 * 119.99761 * 179.78954 * 17 16 15 19 19 C 1.38236 * 120.00340 * 0.43933 * 18 17 16 20 20 C 1.38238 * 119.99703 * 359.81316 * 19 18 17 21 21 C 1.38233 * 120.00275 * 359.97438 * 20 19 18 22 22 C 1.53787 * 113.61420 * 173.82753 * 15 14 12 23 23 C 1.53778 * 87.16945 * 270.75621 * 22 15 14 24 24 H 1.08994 * 113.61816 * 89.15856 * 23 22 15 25 25 F 1.39898 * 113.61281 * 220.06335 * 23 22 15 26 26 C 1.53777 * 113.69162 * 76.28880 * 15 14 12 27 27 C 1.38716 * 119.99994 * 0.27603 * 9 5 4 28 28 C 1.38116 * 119.99723 * 359.45362 * 27 9 5 29 29 H 1.09005 * 109.47209 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46785 * 299.99751 * 1 2 3 31 31 H 1.08997 * 109.47161 * 59.99864 * 1 2 3 32 32 H 1.07994 * 120.00096 * 0.04661 * 4 3 2 33 33 H 1.08999 * 109.47334 * 224.97431 * 6 5 4 34 34 H 0.96706 * 114.00045 * 60.00297 * 7 6 5 35 35 H 1.48501 * 109.99748 * 178.68197 * 8 6 5 36 36 H 1.48502 * 110.00131 * 299.99916 * 8 6 5 37 37 H 1.09000 * 109.47247 * 59.99449 * 11 10 9 38 38 H 1.09004 * 109.47273 * 299.99912 * 11 10 9 39 39 H 0.97004 * 120.00156 * 4.76853 * 14 12 11 40 40 H 1.07997 * 120.00054 * 0.02562 * 17 16 15 41 41 H 1.08005 * 120.00011 * 180.27766 * 18 17 16 42 42 H 1.07990 * 120.00254 * 179.83637 * 19 18 17 43 43 H 1.08000 * 120.00038 * 179.97438 * 20 19 18 44 44 H 1.08001 * 120.00515 * 179.97438 * 21 20 19 45 45 H 1.08996 * 113.61310 * 25.34696 * 22 15 14 46 46 H 1.08996 * 113.60989 * 156.16181 * 22 15 14 47 47 H 1.08999 * 113.61475 * 203.67410 * 26 15 14 48 48 H 1.08999 * 113.61654 * 334.49381 * 26 15 14 49 49 H 1.07994 * 120.00372 * 179.70031 * 27 9 5 50 50 H 1.08003 * 120.00172 * 180.25441 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 3.4312 1.2841 0.0005 5 6 4.0585 2.5150 0.0011 6 6 5.5634 2.5939 0.0011 7 8 6.0209 2.9670 -1.3003 8 14 6.2723 0.9321 0.4556 9 6 3.3032 3.6781 0.0005 10 8 3.9205 4.8897 0.0005 11 6 3.0807 6.0458 0.0005 12 6 3.9348 7.2873 0.0012 13 8 5.1439 7.1915 0.0021 14 7 3.3553 8.5041 0.0018 15 6 4.1817 9.7092 -0.1032 16 6 5.2526 9.7783 0.9548 17 6 5.0953 9.0902 2.1435 18 6 6.0796 9.1501 3.1122 19 6 7.2170 9.9054 2.8962 20 6 7.3719 10.5976 1.7097 21 6 6.3897 10.5342 0.7391 22 6 3.3659 11.0057 -0.2396 23 6 3.4101 10.7833 -1.7606 24 1 2.5839 10.1808 -2.1380 25 9 3.6059 11.9589 -2.4933 26 6 4.7019 9.9797 -1.5248 27 6 1.9179 3.6056 0.0052 28 6 1.2909 2.3750 -0.0009 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 4.0194 0.3784 0.0002 33 1 5.8883 3.3385 0.7277 34 1 5.6903 3.8240 -1.6027 35 1 7.7560 0.9882 0.4282 36 1 5.8041 0.5326 1.8071 37 1 2.4513 6.0377 0.8905 38 1 2.4514 6.0378 -0.8895 39 1 2.3909 8.5819 0.0717 40 1 4.2051 8.5028 2.3137 41 1 5.9588 8.6089 4.0391 42 1 7.9848 9.9543 3.6540 43 1 8.2604 11.1880 1.5410 44 1 6.5105 11.0754 -0.1877 45 1 2.3635 10.9372 0.1828 46 1 3.9031 11.8959 0.0874 47 1 5.6048 10.5898 -1.5506 48 1 4.7794 9.0830 -2.1395 49 1 1.3297 4.5113 0.0097 50 1 0.2124 2.3184 -0.0014 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12905100_4974302.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:15:06 Heat of formation + Delta-G solvation = -86.825080 kcal Electronic energy + Delta-G solvation = -36441.045467 eV Core-core repulsion = 31509.827478 eV Total energy + Delta-G solvation = -4931.217989 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.156 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -48.62742 -42.11825 -41.64148 -40.29817 -39.54688 -38.67548 -38.04125 -36.93100 -34.46730 -32.82049 -32.06160 -31.83060 -30.99076 -29.41098 -27.96607 -27.18928 -26.60450 -25.86992 -23.93827 -23.52777 -22.65398 -22.41586 -21.88558 -20.43519 -19.52535 -18.83607 -18.57581 -18.53304 -18.05701 -17.50645 -17.37624 -17.31023 -16.91684 -16.64255 -16.59181 -16.15835 -16.02815 -15.80003 -15.66872 -15.53250 -15.46758 -15.28572 -15.04095 -14.51296 -14.40894 -14.23155 -14.09582 -14.01689 -13.89775 -13.55369 -13.53429 -13.44754 -13.35334 -13.03748 -12.71631 -12.50223 -12.32003 -12.30317 -12.04377 -11.99195 -11.67574 -11.45095 -11.43821 -11.32361 -11.24712 -11.00761 -10.35133 -10.10274 -9.88710 -9.62346 -8.82495 -4.95570 0.05972 0.33040 0.33422 0.43008 1.31492 1.34906 1.42209 1.55891 1.89704 2.33948 2.48919 2.54632 2.70162 3.13461 3.19911 3.37652 3.42924 3.52052 3.56063 3.72498 3.80742 3.84435 3.89970 3.97770 4.00567 4.06080 4.08778 4.12450 4.13901 4.16973 4.20208 4.27115 4.44726 4.45294 4.46725 4.53873 4.56221 4.64649 4.67161 4.70065 4.79380 4.79755 4.96516 4.96934 4.99267 5.09504 5.11683 5.20461 5.29904 5.41218 5.47656 5.55157 5.61523 6.02216 6.11945 6.37938 6.45142 6.50476 7.10634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.333 6.333 3 C 0.090 3.910 4 C -0.119 4.119 5 C -0.119 4.119 6 C -0.079 4.079 7 O -0.545 6.545 8 Si 0.808 3.192 9 C 0.091 3.909 10 O -0.315 6.315 11 C 0.037 3.963 12 C 0.514 3.486 13 O -0.543 6.543 14 N -0.693 5.693 15 C 0.199 3.801 16 C -0.073 4.073 17 C -0.107 4.107 18 C -0.135 4.135 19 C -0.134 4.134 20 C -0.129 4.129 21 C -0.126 4.126 22 C -0.140 4.140 23 C 0.069 3.931 24 H 0.139 0.861 25 F -0.220 7.220 26 C -0.168 4.168 27 C -0.159 4.159 28 C -0.161 4.161 29 H 0.114 0.886 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.151 0.849 33 H 0.061 0.939 34 H 0.371 0.629 35 H -0.295 1.295 36 H -0.264 1.264 37 H 0.122 0.878 38 H 0.128 0.872 39 H 0.426 0.574 40 H 0.120 0.880 41 H 0.129 0.871 42 H 0.133 0.867 43 H 0.137 0.863 44 H 0.133 0.867 45 H 0.119 0.881 46 H 0.106 0.894 47 H 0.101 0.899 48 H 0.077 0.923 49 H 0.169 0.831 50 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.234 0.975 0.513 11.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.248 6.248 3 C 0.045 3.955 4 C -0.137 4.137 5 C -0.120 4.120 6 C -0.187 4.187 7 O -0.351 6.351 8 Si 0.710 3.290 9 C 0.046 3.954 10 O -0.229 6.229 11 C -0.041 4.041 12 C 0.300 3.700 13 O -0.418 6.418 14 N -0.350 5.350 15 C 0.112 3.888 16 C -0.075 4.075 17 C -0.126 4.126 18 C -0.153 4.153 19 C -0.152 4.152 20 C -0.147 4.147 21 C -0.144 4.144 22 C -0.177 4.177 23 C 0.034 3.966 24 H 0.156 0.844 25 F -0.201 7.201 26 C -0.207 4.207 27 C -0.177 4.177 28 C -0.180 4.180 29 H 0.132 0.868 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.168 0.832 33 H 0.079 0.921 34 H 0.220 0.780 35 H -0.223 1.223 36 H -0.189 1.189 37 H 0.140 0.860 38 H 0.145 0.855 39 H 0.266 0.734 40 H 0.138 0.862 41 H 0.147 0.853 42 H 0.151 0.849 43 H 0.154 0.846 44 H 0.151 0.849 45 H 0.138 0.862 46 H 0.125 0.875 47 H 0.119 0.881 48 H 0.096 0.904 49 H 0.186 0.814 50 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -9.317 -0.231 1.073 9.381 hybrid contribution -0.528 1.935 0.437 2.053 sum -9.845 1.704 1.510 10.104 Atomic orbital electron populations 1.23354 0.76377 1.05596 1.02374 1.86087 1.23394 1.26352 1.88928 1.18979 0.91916 0.85391 0.99199 1.20179 0.92460 0.96785 1.04319 1.19435 0.95920 0.91053 1.05562 1.25467 0.92923 1.12306 0.87971 1.86667 1.74228 1.42208 1.31996 0.92253 0.76249 0.79169 0.81362 1.18768 0.91696 0.84211 1.00712 1.86083 1.35469 1.11869 1.89430 1.22715 0.92598 0.81867 1.06894 1.20483 0.88590 0.85008 0.75940 1.90837 1.16225 1.86952 1.47792 1.45336 1.11209 1.02933 1.75494 1.19581 0.90763 0.85776 0.92709 1.19658 0.95527 0.97630 0.94644 1.20953 0.99316 0.98745 0.93537 1.21376 0.94572 0.99438 0.99893 1.21427 0.98188 0.97428 0.98124 1.21396 0.99548 0.99809 0.93903 1.21206 0.93641 0.99783 0.99785 1.23943 1.02967 0.96041 0.94786 1.23352 0.99510 0.82924 0.90846 0.84401 1.92803 1.96368 1.51125 1.79773 1.24196 0.99141 1.01390 0.95989 1.21372 0.92017 1.00013 1.04295 1.21427 1.01598 0.90941 1.04032 0.86802 0.91526 0.91383 0.83204 0.92147 0.78014 1.22284 1.18942 0.86020 0.85475 0.73430 0.86166 0.85324 0.84869 0.84552 0.84916 0.86219 0.87512 0.88111 0.90411 0.81401 0.82116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.11 9.81 113.37 1.11 1.00 16 2 O -0.33 -0.56 10.50 -93.27 -0.98 -1.54 16 3 C 0.09 0.18 6.68 22.49 0.15 0.33 16 4 C -0.12 -0.47 8.59 22.36 0.19 -0.28 16 5 C -0.12 -0.64 5.28 -19.78 -0.10 -0.74 16 6 C -0.08 -0.62 2.33 71.23 0.17 -0.46 16 7 O -0.54 -5.28 12.65 -148.98 -1.89 -7.16 16 8 Si 0.81 4.39 30.17 68.60 2.07 6.46 16 9 C 0.09 0.20 6.62 22.49 0.15 0.35 16 10 O -0.31 -0.90 8.56 -74.22 -0.64 -1.53 16 11 C 0.04 -0.24 5.22 71.23 0.37 0.13 16 12 C 0.51 -0.49 6.67 87.66 0.58 0.09 16 13 O -0.54 -5.67 14.76 16.00 0.24 -5.43 16 14 N -0.69 5.13 4.53 -423.92 -1.92 3.21 16 15 C 0.20 -0.59 0.95 3.38 0.00 -0.59 16 16 C -0.07 -0.24 4.13 -19.86 -0.08 -0.32 16 17 C -0.11 -0.49 8.14 22.27 0.18 -0.31 16 18 C -0.13 -0.74 10.05 22.27 0.22 -0.52 16 19 C -0.13 -0.69 10.05 22.27 0.22 -0.47 16 20 C -0.13 -0.61 10.05 22.27 0.22 -0.38 16 21 C -0.13 -0.54 9.22 22.27 0.21 -0.34 16 22 C -0.14 0.97 7.20 31.12 0.22 1.20 16 23 C 0.07 -0.35 5.59 31.18 0.17 -0.17 16 24 H 0.14 -1.45 8.14 -2.39 -0.02 -1.47 16 25 F -0.22 -0.48 17.41 44.97 0.78 0.30 16 26 C -0.17 0.20 7.05 31.18 0.22 0.42 16 27 C -0.16 0.58 9.03 22.36 0.20 0.78 16 28 C -0.16 0.45 9.03 22.36 0.20 0.65 16 29 H 0.11 -1.00 8.14 -2.38 -0.02 -1.02 16 30 H 0.07 -0.57 7.66 -2.39 -0.02 -0.59 16 31 H 0.07 -0.59 7.66 -2.39 -0.02 -0.61 16 32 H 0.15 0.22 5.13 -2.91 -0.01 0.20 16 33 H 0.06 0.64 7.82 -2.39 -0.02 0.62 16 34 H 0.37 2.63 8.60 -74.05 -0.64 1.99 16 35 H -0.30 -3.52 7.11 99.48 0.71 -2.82 16 36 H -0.26 -1.93 7.11 99.48 0.71 -1.22 16 37 H 0.12 -1.51 7.65 -2.39 -0.02 -1.53 16 38 H 0.13 -1.65 7.67 -2.39 -0.02 -1.67 16 39 H 0.43 -6.79 8.63 -92.70 -0.80 -7.59 16 40 H 0.12 0.19 6.96 -2.91 -0.02 0.17 16 41 H 0.13 0.32 8.06 -2.91 -0.02 0.30 16 42 H 0.13 0.22 8.06 -2.92 -0.02 0.19 16 43 H 0.14 0.13 8.06 -2.91 -0.02 0.11 16 44 H 0.13 0.18 5.99 -2.91 -0.02 0.16 16 45 H 0.12 -1.50 8.10 -2.39 -0.02 -1.52 16 46 H 0.11 -0.52 8.09 -2.39 -0.02 -0.54 16 47 H 0.10 0.04 5.81 -2.39 -0.01 0.03 16 48 H 0.08 0.07 8.14 -2.39 -0.02 0.05 16 49 H 0.17 -1.96 6.29 -2.91 -0.02 -1.97 16 50 H 0.16 -1.38 6.29 -2.91 -0.02 -1.40 16 Total: 0.00 -27.32 411.45 1.91 -25.42 By element: Atomic # 1 Polarization: -19.72 SS G_CDS: -0.38 Total: -20.10 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: 4.62 Total: 0.38 kcal Atomic # 7 Polarization: 5.13 SS G_CDS: -1.92 Total: 3.21 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: -3.26 Total: -15.66 kcal Atomic # 9 Polarization: -0.48 SS G_CDS: 0.78 Total: 0.30 kcal Atomic # 14 Polarization: 4.39 SS G_CDS: 2.07 Total: 6.46 kcal Total: -27.32 1.91 -25.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12905100_4974302.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.408 kcal (2) G-P(sol) polarization free energy of solvation -27.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds