Wall clock time and date at job start Tue Mar 9 2021 13:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42898 * 113.99714 * 2 1 4 4 C 1.53001 * 109.47075 * 180.02562 * 3 2 1 5 5 H 1.09004 * 112.84710 * 43.80084 * 4 3 2 6 6 C 1.53779 * 113.61623 * 174.99898 * 4 3 2 7 7 C 1.53782 * 87.08272 * 140.06518 * 6 4 3 8 8 H 1.09002 * 113.61128 * 89.19612 * 7 6 4 9 9 N 1.46492 * 113.61268 * 220.01812 * 7 6 4 10 10 C 1.34780 * 119.99991 * 204.99330 * 9 7 6 11 11 O 1.21553 * 119.99893 * 0.02562 * 10 9 7 12 12 C 1.47844 * 120.00150 * 179.97438 * 10 9 7 13 13 C 1.39541 * 120.13917 * 0.02562 * 12 10 9 14 14 C 1.38074 * 119.84260 * 179.97438 * 13 12 10 15 15 Br 1.89103 * 119.94082 * 180.02562 * 14 13 12 16 16 C 1.38425 * 120.12410 * 359.97438 * 14 13 12 17 17 C 1.38362 * 120.28131 * 0.02562 * 16 14 13 18 18 C 1.50702 * 119.91899 * 179.97438 * 17 16 14 19 19 O 1.42908 * 109.47116 * 120.00177 * 18 17 16 20 20 Si 1.86294 * 109.47447 * 359.97438 * 18 17 16 21 21 C 1.37938 * 120.15712 * 359.97438 * 17 16 14 22 22 C 1.53780 * 113.68783 * 272.53593 * 4 3 2 23 23 H 1.09000 * 109.46987 * 180.02562 * 1 2 3 24 24 H 1.09009 * 109.47027 * 300.00087 * 1 2 3 25 25 H 1.08999 * 109.47371 * 59.99698 * 1 2 3 26 26 H 1.08997 * 109.47374 * 60.00029 * 3 2 1 27 27 H 1.09004 * 109.47056 * 299.99800 * 3 2 1 28 28 H 1.08994 * 113.61727 * 25.51357 * 6 4 3 29 29 H 1.08999 * 113.68881 * 254.62460 * 6 4 3 30 30 H 0.97005 * 120.00363 * 25.00323 * 9 7 6 31 31 H 1.08000 * 120.07952 * 359.97438 * 13 12 10 32 32 H 1.07997 * 119.86028 * 179.72405 * 16 14 13 33 33 H 1.09004 * 109.46992 * 239.99697 * 18 17 16 34 34 H 0.96695 * 113.99545 * 299.99582 * 19 18 17 35 35 H 1.48495 * 110.00087 * 180.02562 * 20 18 17 36 36 H 1.48503 * 109.99930 * 301.31933 * 20 18 17 37 37 H 1.08002 * 120.06131 * 179.97438 * 21 17 16 38 38 H 1.09000 * 113.61298 * 105.46221 * 22 4 3 39 39 H 1.08991 * 113.61753 * 334.54952 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 1 3.8999 0.4287 -0.6962 6 6 4.2603 2.5354 -0.1235 7 6 5.2692 1.9985 0.9055 8 1 6.1083 1.4662 0.4575 9 7 5.6899 2.9972 1.8911 10 6 6.8800 2.8724 2.5112 11 8 7.6045 1.9313 2.2523 12 6 7.3049 3.8807 3.5055 13 6 6.4757 4.9624 3.8046 14 6 6.8783 5.9002 4.7346 15 35 5.7566 7.3669 5.1426 16 6 8.1012 5.7682 5.3697 17 6 8.9274 4.6976 5.0771 18 6 10.2572 4.5622 5.7730 19 8 10.2930 3.3303 6.4965 20 14 10.4875 5.9840 6.9545 21 6 8.5367 3.7540 4.1499 22 6 4.1470 1.0736 1.4059 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.6886 1.8464 0.8899 27 1 1.6886 1.8464 -0.8900 28 1 3.6744 3.3799 0.2390 29 1 4.6931 2.7121 -1.1082 30 1 5.1118 3.7484 2.0976 31 1 5.5213 5.0660 3.3098 32 1 8.4138 6.5066 6.0932 33 1 11.0573 4.5721 5.0328 34 1 9.6073 3.2520 7.1738 35 1 11.7956 5.8624 7.6467 36 1 10.4208 7.2720 6.2184 37 1 9.1830 2.9191 3.9224 38 1 4.4881 0.0689 1.6556 39 1 3.5302 1.5185 2.1866 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12906260_12335870.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:18:11 Heat of formation + Delta-G solvation = -54.304181 kcal Electronic energy + Delta-G solvation = -22845.193346 eV Core-core repulsion = 19187.683533 eV Total energy + Delta-G solvation = -3657.509813 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.046 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.70839 -40.67840 -39.47655 -38.20698 -37.71747 -34.88254 -33.65981 -32.95709 -30.52064 -29.73896 -27.19801 -27.00891 -26.75758 -25.57292 -23.14632 -22.85289 -21.55484 -20.71364 -19.12696 -18.07576 -17.74372 -17.53661 -17.28399 -16.91167 -16.70680 -16.39029 -16.19119 -15.78396 -15.74587 -15.57184 -15.01114 -14.84128 -14.38369 -14.28084 -13.95622 -13.61692 -13.39690 -13.23236 -13.06419 -13.03764 -12.47658 -12.22322 -12.13673 -12.00548 -11.96098 -11.76304 -11.51608 -11.46754 -11.06115 -10.64855 -10.63162 -10.32921 -10.09400 -9.96143 -5.16429 -0.54372 -0.21840 0.35402 1.12336 1.49039 1.56836 1.85290 1.97112 2.46571 2.72179 3.18002 3.26692 3.35491 3.42504 3.49639 3.71623 3.72579 3.79733 3.81738 3.92242 4.16958 4.19056 4.24027 4.27687 4.36989 4.42040 4.45802 4.48363 4.54929 4.64689 4.68501 4.72356 4.74763 4.89132 4.92614 4.99950 5.03233 5.17628 5.33632 5.46641 6.16175 6.33596 6.44327 7.06845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.390 6.390 3 C 0.072 3.928 4 C -0.107 4.107 5 H 0.105 0.895 6 C -0.138 4.138 7 C 0.122 3.878 8 H 0.120 0.880 9 N -0.715 5.715 10 C 0.562 3.438 11 O -0.526 6.526 12 C -0.128 4.128 13 C -0.054 4.054 14 C -0.094 4.094 15 Br -0.033 7.033 16 C -0.065 4.065 17 C -0.119 4.119 18 C -0.067 4.067 19 O -0.535 6.535 20 Si 0.684 3.316 21 C -0.017 4.017 22 C -0.143 4.143 23 H 0.087 0.913 24 H 0.041 0.959 25 H 0.041 0.959 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.400 0.600 31 H 0.138 0.862 32 H 0.142 0.858 33 H 0.121 0.879 34 H 0.381 0.619 35 H -0.248 1.248 36 H -0.253 1.253 37 H 0.149 0.851 38 H 0.078 0.922 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.745 3.271 1.175 5.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.309 6.309 3 C -0.005 4.005 4 C -0.125 4.125 5 H 0.123 0.877 6 C -0.176 4.176 7 C 0.018 3.982 8 H 0.138 0.862 9 N -0.366 5.366 10 C 0.349 3.651 11 O -0.402 6.402 12 C -0.132 4.132 13 C -0.075 4.075 14 C -0.174 4.174 15 Br 0.053 6.947 16 C -0.084 4.084 17 C -0.121 4.121 18 C -0.178 4.178 19 O -0.340 6.340 20 Si 0.586 3.414 21 C -0.037 4.037 22 C -0.182 4.182 23 H 0.106 0.894 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.107 0.893 29 H 0.100 0.900 30 H 0.236 0.764 31 H 0.156 0.844 32 H 0.159 0.841 33 H 0.138 0.862 34 H 0.228 0.772 35 H -0.173 1.173 36 H -0.178 1.178 37 H 0.167 0.833 38 H 0.096 0.904 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.536 3.567 0.954 5.112 hybrid contribution -0.378 0.150 -0.620 0.741 sum -3.913 3.717 0.335 5.408 Atomic orbital electron populations 1.22768 0.80776 1.03046 1.00013 1.87901 1.19848 1.27746 1.95401 1.22509 0.92759 0.84964 1.00223 1.22332 0.93175 0.98321 0.98713 0.87671 1.23371 0.97011 0.97172 1.00094 1.22581 0.96476 0.90028 0.89145 0.86173 1.45902 1.19623 1.28569 1.42539 1.18141 0.81332 0.84996 0.80657 1.90826 1.53242 1.32356 1.63781 1.19981 0.96520 0.96426 1.00226 1.21275 0.99127 0.91999 0.95062 1.21643 0.96670 0.96804 1.02269 1.96845 1.64253 1.39770 1.93852 1.21222 0.92098 0.97213 0.97882 1.20385 0.97551 0.95286 0.98828 1.25087 0.95376 0.97215 1.00129 1.86551 1.57635 1.36535 1.53273 0.94817 0.86395 0.75913 0.84320 1.21304 0.94044 0.97420 0.90886 1.23533 0.97001 1.00997 0.96680 0.89430 0.94031 0.93987 0.93144 0.93025 0.89304 0.89952 0.76404 0.84425 0.84095 0.86173 0.77175 1.17274 1.17803 0.83346 0.90370 0.89581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 11.01 101.05 1.11 1.09 16 2 O -0.39 -0.67 10.70 -35.23 -0.38 -1.04 16 3 C 0.07 -0.05 5.78 37.16 0.21 0.16 16 4 C -0.11 0.13 4.01 -89.81 -0.36 -0.23 16 5 H 0.11 -0.05 8.14 -51.93 -0.42 -0.48 16 6 C -0.14 0.36 7.39 -25.92 -0.19 0.16 16 7 C 0.12 -0.09 4.24 -67.12 -0.28 -0.37 16 8 H 0.12 0.12 7.46 -51.93 -0.39 -0.27 16 9 N -0.72 0.68 5.31 -53.96 -0.29 0.40 16 10 C 0.56 1.05 7.77 -12.33 -0.10 0.95 16 11 O -0.53 -3.01 15.95 5.32 0.08 -2.92 16 12 C -0.13 -0.05 5.87 -104.97 -0.62 -0.67 16 13 C -0.05 0.07 9.28 -39.16 -0.36 -0.29 16 14 C -0.09 0.09 6.22 -39.57 -0.25 -0.16 16 15 Br -0.03 0.03 33.69 -68.01 -2.29 -2.26 16 16 C -0.06 0.08 8.41 -39.47 -0.33 -0.25 16 17 C -0.12 0.08 5.38 -104.69 -0.56 -0.49 16 18 C -0.07 0.07 2.82 36.01 0.10 0.17 16 19 O -0.53 0.19 12.77 -35.23 -0.45 -0.26 16 20 Si 0.68 -1.24 29.78 -169.99 -5.06 -6.30 16 21 C -0.02 -0.01 9.15 -39.18 -0.36 -0.37 16 22 C -0.14 0.09 7.43 -25.91 -0.19 -0.10 16 23 H 0.09 -0.12 8.14 -51.93 -0.42 -0.55 16 24 H 0.04 -0.06 8.14 -51.92 -0.42 -0.49 16 25 H 0.04 -0.07 8.14 -51.93 -0.42 -0.49 16 26 H 0.05 -0.08 7.85 -51.93 -0.41 -0.49 16 27 H 0.05 -0.08 8.14 -51.93 -0.42 -0.50 16 28 H 0.09 -0.34 8.08 -51.93 -0.42 -0.76 16 29 H 0.08 -0.22 8.14 -51.93 -0.42 -0.65 16 30 H 0.40 -1.43 6.76 -40.82 -0.28 -1.71 16 31 H 0.14 -0.51 6.40 -52.49 -0.34 -0.84 16 32 H 0.14 -0.37 4.86 -52.49 -0.26 -0.62 16 33 H 0.12 -0.08 7.96 -51.93 -0.41 -0.49 16 34 H 0.38 -1.63 8.70 45.56 0.40 -1.23 16 35 H -0.25 -0.36 7.11 56.52 0.40 0.04 16 36 H -0.25 -0.08 7.11 56.52 0.40 0.33 16 37 H 0.15 0.27 7.65 -52.49 -0.40 -0.13 16 38 H 0.08 0.05 8.14 -51.93 -0.42 -0.37 16 39 H 0.09 -0.10 7.90 -51.93 -0.41 -0.51 16 LS Contribution 347.79 15.07 5.24 5.24 Total: 0.00 -7.38 347.79 -10.38 -17.77 By element: Atomic # 1 Polarization: -5.15 SS G_CDS: -5.07 Total: -10.22 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -2.18 Total: -0.40 kcal Atomic # 7 Polarization: 0.68 SS G_CDS: -0.29 Total: 0.40 kcal Atomic # 8 Polarization: -3.49 SS G_CDS: -0.74 Total: -4.23 kcal Atomic # 14 Polarization: -1.24 SS G_CDS: -5.06 Total: -6.30 kcal Atomic # 35 Polarization: 0.03 SS G_CDS: -2.29 Total: -2.26 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -7.38 -10.38 -17.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12906260_12335870.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.537 kcal (2) G-P(sol) polarization free energy of solvation -7.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds