Wall clock time and date at job start Tue Mar 9 2021 13:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42898 * 113.99714 * 2 1 4 4 C 1.53001 * 109.47075 * 180.02562 * 3 2 1 5 5 H 1.09004 * 112.84710 * 43.80084 * 4 3 2 6 6 C 1.53779 * 113.61623 * 174.99898 * 4 3 2 7 7 C 1.53782 * 87.08272 * 140.06518 * 6 4 3 8 8 H 1.09002 * 113.61128 * 89.19612 * 7 6 4 9 9 N 1.46492 * 113.61268 * 220.01812 * 7 6 4 10 10 C 1.34780 * 119.99991 * 204.99330 * 9 7 6 11 11 O 1.21553 * 119.99893 * 0.02562 * 10 9 7 12 12 C 1.47844 * 120.00150 * 179.97438 * 10 9 7 13 13 C 1.39541 * 120.13917 * 0.02562 * 12 10 9 14 14 C 1.38074 * 119.84260 * 179.97438 * 13 12 10 15 15 Br 1.89103 * 119.94082 * 180.02562 * 14 13 12 16 16 C 1.38425 * 120.12410 * 359.97438 * 14 13 12 17 17 C 1.38362 * 120.28131 * 0.02562 * 16 14 13 18 18 C 1.50702 * 119.91899 * 179.97438 * 17 16 14 19 19 O 1.42908 * 109.47116 * 120.00177 * 18 17 16 20 20 Si 1.86294 * 109.47447 * 359.97438 * 18 17 16 21 21 C 1.37938 * 120.15712 * 359.97438 * 17 16 14 22 22 C 1.53780 * 113.68783 * 272.53593 * 4 3 2 23 23 H 1.09000 * 109.46987 * 180.02562 * 1 2 3 24 24 H 1.09009 * 109.47027 * 300.00087 * 1 2 3 25 25 H 1.08999 * 109.47371 * 59.99698 * 1 2 3 26 26 H 1.08997 * 109.47374 * 60.00029 * 3 2 1 27 27 H 1.09004 * 109.47056 * 299.99800 * 3 2 1 28 28 H 1.08994 * 113.61727 * 25.51357 * 6 4 3 29 29 H 1.08999 * 113.68881 * 254.62460 * 6 4 3 30 30 H 0.97005 * 120.00363 * 25.00323 * 9 7 6 31 31 H 1.08000 * 120.07952 * 359.97438 * 13 12 10 32 32 H 1.07997 * 119.86028 * 179.72405 * 16 14 13 33 33 H 1.09004 * 109.46992 * 239.99697 * 18 17 16 34 34 H 0.96695 * 113.99545 * 299.99582 * 19 18 17 35 35 H 1.48495 * 110.00087 * 180.02562 * 20 18 17 36 36 H 1.48503 * 109.99930 * 301.31933 * 20 18 17 37 37 H 1.08002 * 120.06131 * 179.97438 * 21 17 16 38 38 H 1.09000 * 113.61298 * 105.46221 * 22 4 3 39 39 H 1.08991 * 113.61753 * 334.54952 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 1 3.8999 0.4287 -0.6962 6 6 4.2603 2.5354 -0.1235 7 6 5.2692 1.9985 0.9055 8 1 6.1083 1.4662 0.4575 9 7 5.6899 2.9972 1.8911 10 6 6.8800 2.8724 2.5112 11 8 7.6045 1.9313 2.2523 12 6 7.3049 3.8807 3.5055 13 6 6.4757 4.9624 3.8046 14 6 6.8783 5.9002 4.7346 15 35 5.7566 7.3669 5.1426 16 6 8.1012 5.7682 5.3697 17 6 8.9274 4.6976 5.0771 18 6 10.2572 4.5622 5.7730 19 8 10.2930 3.3303 6.4965 20 14 10.4875 5.9840 6.9545 21 6 8.5367 3.7540 4.1499 22 6 4.1470 1.0736 1.4059 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.6886 1.8464 0.8899 27 1 1.6886 1.8464 -0.8900 28 1 3.6744 3.3799 0.2390 29 1 4.6931 2.7121 -1.1082 30 1 5.1118 3.7484 2.0976 31 1 5.5213 5.0660 3.3098 32 1 8.4138 6.5066 6.0932 33 1 11.0573 4.5721 5.0328 34 1 9.6073 3.2520 7.1738 35 1 11.7956 5.8624 7.6467 36 1 10.4208 7.2720 6.2184 37 1 9.1830 2.9191 3.9224 38 1 4.4881 0.0689 1.6556 39 1 3.5302 1.5185 2.1866 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12906260_12335870.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:18:10 Heat of formation + Delta-G solvation = -52.981569 kcal Electronic energy + Delta-G solvation = -22845.135993 eV Core-core repulsion = 19187.683533 eV Total energy + Delta-G solvation = -3657.452460 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.046 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.74003 -40.62616 -39.53020 -38.20487 -37.68247 -34.95819 -33.61488 -32.91938 -30.45911 -29.66955 -27.14273 -26.94493 -26.67166 -25.56638 -23.10301 -22.81533 -21.60549 -20.64797 -19.10456 -18.04913 -17.75651 -17.47983 -17.24733 -16.85244 -16.65917 -16.38079 -16.21344 -15.82547 -15.75896 -15.52921 -14.97947 -14.87184 -14.36016 -14.23076 -13.92437 -13.46717 -13.33821 -13.16174 -13.03982 -12.98965 -12.42774 -12.20622 -12.09632 -11.96078 -11.95530 -11.67448 -11.46694 -11.40932 -11.17189 -10.60224 -10.58775 -10.33404 -10.07650 -9.91340 -5.05618 -0.52954 -0.16981 0.42442 1.20891 1.49487 1.58895 1.90254 1.98085 2.44982 2.81679 3.26277 3.33376 3.45130 3.53774 3.59566 3.78315 3.80122 3.86848 3.89424 3.95578 4.20521 4.25947 4.32828 4.38866 4.47187 4.48839 4.53979 4.59973 4.69747 4.74615 4.76374 4.81039 4.85954 4.92070 4.99083 5.04526 5.07514 5.20464 5.36024 5.51427 6.24687 6.36147 6.70655 7.02500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.420 6.420 3 C 0.069 3.931 4 C -0.106 4.106 5 H 0.093 0.907 6 C -0.120 4.120 7 C 0.116 3.884 8 H 0.097 0.903 9 N -0.699 5.699 10 C 0.559 3.441 11 O -0.575 6.575 12 C -0.136 4.136 13 C -0.043 4.043 14 C -0.099 4.099 15 Br -0.027 7.027 16 C -0.061 4.061 17 C -0.116 4.116 18 C -0.076 4.076 19 O -0.553 6.553 20 Si 0.773 3.227 21 C -0.031 4.031 22 C -0.142 4.142 23 H 0.089 0.911 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.112 0.888 29 H 0.087 0.913 30 H 0.416 0.584 31 H 0.163 0.837 32 H 0.157 0.843 33 H 0.112 0.888 34 H 0.397 0.603 35 H -0.294 1.294 36 H -0.276 1.276 37 H 0.129 0.871 38 H 0.057 0.943 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.359 5.007 1.475 8.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C -0.007 4.007 4 C -0.125 4.125 5 H 0.111 0.889 6 C -0.158 4.158 7 C 0.011 3.989 8 H 0.115 0.885 9 N -0.350 5.350 10 C 0.347 3.653 11 O -0.455 6.455 12 C -0.140 4.140 13 C -0.064 4.064 14 C -0.178 4.178 15 Br 0.059 6.941 16 C -0.081 4.081 17 C -0.117 4.117 18 C -0.185 4.185 19 O -0.361 6.361 20 Si 0.678 3.322 21 C -0.050 4.050 22 C -0.181 4.181 23 H 0.107 0.893 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.130 0.870 29 H 0.106 0.894 30 H 0.254 0.746 31 H 0.181 0.819 32 H 0.174 0.826 33 H 0.130 0.870 34 H 0.247 0.753 35 H -0.222 1.222 36 H -0.202 1.202 37 H 0.147 0.853 38 H 0.076 0.924 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.215 5.312 1.248 7.548 hybrid contribution 0.133 -0.404 -0.703 0.822 sum -5.082 4.908 0.545 7.086 Atomic orbital electron populations 1.22885 0.79789 1.03526 1.00842 1.87863 1.21142 1.29316 1.95605 1.22630 0.92486 0.84298 1.01260 1.22289 0.93394 0.98977 0.97880 0.88911 1.23311 0.95819 0.97007 0.99666 1.22548 0.96072 0.90419 0.89844 0.88457 1.45797 1.18872 1.28718 1.41595 1.18420 0.81569 0.84624 0.80705 1.90801 1.54815 1.34395 1.65497 1.19873 0.96846 0.96892 1.00359 1.21459 0.99571 0.90807 0.94532 1.21742 0.96800 0.96990 1.02286 1.96862 1.64010 1.39436 1.93818 1.21386 0.91875 0.96976 0.97820 1.20336 0.97721 0.95173 0.98506 1.25272 0.95079 0.97708 1.00491 1.86512 1.58651 1.36942 1.54005 0.93817 0.83680 0.73238 0.81456 1.21249 0.94350 0.97524 0.91894 1.23529 0.97144 0.99972 0.97458 0.89268 0.93148 0.93155 0.91920 0.92025 0.86971 0.89437 0.74570 0.81918 0.82592 0.87014 0.75290 1.22174 1.20194 0.85296 0.92404 0.88528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 11.01 113.37 1.25 1.20 16 2 O -0.42 -1.47 10.70 -148.98 -1.59 -3.07 16 3 C 0.07 -0.16 5.78 71.98 0.42 0.26 16 4 C -0.11 0.24 4.01 -10.27 -0.04 0.20 16 5 H 0.09 0.02 8.14 -2.38 -0.02 0.00 16 6 C -0.12 0.73 7.39 31.12 0.23 0.96 16 7 C 0.12 -0.10 4.24 45.52 0.19 0.09 16 8 H 0.10 0.41 7.46 -2.39 -0.02 0.39 16 9 N -0.70 1.38 5.31 -442.90 -2.35 -0.97 16 10 C 0.56 2.74 7.77 86.79 0.67 3.42 16 11 O -0.57 -8.11 15.95 -3.88 -0.06 -8.17 16 12 C -0.14 -0.18 5.87 -20.09 -0.12 -0.30 16 13 C -0.04 0.16 9.28 22.55 0.21 0.37 16 14 C -0.10 0.31 6.22 22.28 0.14 0.44 16 15 Br -0.03 0.10 33.69 -20.37 -0.69 -0.59 16 16 C -0.06 0.20 8.41 22.34 0.19 0.38 16 17 C -0.12 0.11 5.38 -19.91 -0.11 0.00 16 18 C -0.08 0.10 2.82 71.24 0.20 0.30 16 19 O -0.55 -0.05 12.77 -148.98 -1.90 -1.96 16 20 Si 0.77 -2.86 29.78 68.60 2.04 -0.81 16 21 C -0.03 -0.09 9.15 22.53 0.21 0.12 16 22 C -0.14 0.10 7.43 31.12 0.23 0.33 16 23 H 0.09 -0.24 8.14 -2.39 -0.02 -0.26 16 24 H 0.05 -0.19 8.14 -2.38 -0.02 -0.21 16 25 H 0.05 -0.19 8.14 -2.39 -0.02 -0.21 16 26 H 0.06 -0.30 7.85 -2.39 -0.02 -0.32 16 27 H 0.06 -0.27 8.14 -2.38 -0.02 -0.29 16 28 H 0.11 -1.17 8.08 -2.39 -0.02 -1.19 16 29 H 0.09 -0.56 8.14 -2.39 -0.02 -0.58 16 30 H 0.42 -3.61 6.76 -92.70 -0.63 -4.24 16 31 H 0.16 -1.56 6.40 -2.91 -0.02 -1.58 16 32 H 0.16 -1.03 4.86 -2.91 -0.01 -1.04 16 33 H 0.11 0.00 7.96 -2.39 -0.02 -0.02 16 34 H 0.40 -3.30 8.70 -74.06 -0.64 -3.95 16 35 H -0.29 -1.18 7.11 99.48 0.71 -0.47 16 36 H -0.28 -0.01 7.11 99.48 0.71 0.69 16 37 H 0.13 0.86 7.65 -2.91 -0.02 0.84 16 38 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 39 H 0.10 -0.28 7.90 -2.39 -0.02 -0.30 16 Total: 0.00 -19.31 347.79 -1.02 -20.33 By element: Atomic # 1 Polarization: -12.41 SS G_CDS: -0.14 Total: -12.55 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: 3.67 Total: 7.79 kcal Atomic # 7 Polarization: 1.38 SS G_CDS: -2.35 Total: -0.97 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: -3.56 Total: -13.19 kcal Atomic # 14 Polarization: -2.86 SS G_CDS: 2.04 Total: -0.81 kcal Atomic # 35 Polarization: 0.10 SS G_CDS: -0.69 Total: -0.59 kcal Total: -19.31 -1.02 -20.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12906260_12335870.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.647 kcal (2) G-P(sol) polarization free energy of solvation -19.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds