Wall clock time and date at job start Tue Mar 9 2021 13:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99998 * 2 1 4 4 C 1.53005 * 109.47355 * 180.02562 * 3 2 1 5 5 H 1.08996 * 112.84666 * 43.80057 * 4 3 2 6 6 C 1.53775 * 113.61451 * 175.00032 * 4 3 2 7 7 C 1.53783 * 87.07996 * 139.97898 * 6 4 3 8 8 H 1.09004 * 113.61178 * 89.20150 * 7 6 4 9 9 N 1.46497 * 113.61590 * 220.01552 * 7 6 4 10 10 C 1.34773 * 119.99933 * 205.00320 * 9 7 6 11 11 O 1.21610 * 120.00252 * 359.97438 * 10 9 7 12 12 C 1.47386 * 120.00112 * 180.02562 * 10 9 7 13 13 C 1.36411 * 127.19527 * 179.97438 * 12 10 9 14 14 C 1.50703 * 125.80010 * 359.97438 * 13 12 10 15 15 O 1.33646 * 108.39825 * 180.26336 * 13 12 10 16 16 C 1.34216 * 110.90996 * 359.59195 * 15 13 12 17 17 C 1.50696 * 125.44367 * 180.17098 * 16 15 13 18 18 O 1.42899 * 109.47447 * 120.27736 * 17 16 15 19 19 Si 1.86306 * 109.46958 * 0.28117 * 17 16 15 20 20 C 1.34180 * 109.12234 * 0.41426 * 16 15 13 21 21 C 1.53775 * 113.61030 * 272.50088 * 4 3 2 22 22 H 1.08996 * 109.47230 * 60.00217 * 1 2 3 23 23 H 1.08999 * 109.46846 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47083 * 299.99983 * 1 2 3 25 25 H 1.09003 * 109.47296 * 59.99987 * 3 2 1 26 26 H 1.08997 * 109.47122 * 300.00137 * 3 2 1 27 27 H 1.09003 * 113.61715 * 25.43695 * 6 4 3 28 28 H 1.09002 * 113.61716 * 254.52963 * 6 4 3 29 29 H 0.97005 * 119.99871 * 25.00683 * 9 7 6 30 30 H 1.09002 * 109.47152 * 89.99913 * 14 13 12 31 31 H 1.09001 * 109.46980 * 330.00014 * 14 13 12 32 32 H 1.09004 * 109.47113 * 209.99994 * 14 13 12 33 33 H 1.08997 * 109.47241 * 240.28301 * 17 16 15 34 34 H 0.96697 * 114.00186 * 300.00322 * 18 17 16 35 35 H 1.48501 * 110.00045 * 58.67795 * 19 17 16 36 36 H 1.48498 * 110.00046 * 180.02562 * 19 17 16 37 37 H 1.08003 * 127.02533 * 179.78506 * 20 16 15 38 38 H 1.09003 * 113.61807 * 105.47317 * 21 4 3 39 39 H 1.08995 * 113.61802 * 334.56201 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 1 3.8999 0.4287 -0.6962 6 6 4.2603 2.5353 -0.1235 7 6 5.2678 1.9992 0.9072 8 1 6.1077 1.4668 0.4607 9 7 5.6872 2.9987 1.8928 10 6 6.8766 2.8744 2.5143 11 8 7.6015 1.9324 2.2574 12 6 7.2983 3.8796 3.5063 13 6 8.4618 3.8982 4.2181 14 6 9.5657 2.8761 4.1298 15 8 8.4537 4.9735 5.0117 16 6 7.3251 5.6812 4.8479 17 6 6.9783 6.9541 5.5763 18 8 6.7900 8.0082 4.6301 19 14 8.3643 7.4023 6.7377 20 6 6.5524 5.0716 3.9359 21 6 4.1452 1.0745 1.4068 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6886 1.8464 0.8900 26 1 1.6886 1.8464 -0.8899 27 1 3.6738 3.3801 0.2379 28 1 4.6941 2.7102 -1.1081 29 1 5.1088 3.7499 2.0980 30 1 10.2792 3.1773 3.3628 31 1 9.1423 1.9055 3.8711 32 1 10.0739 2.8061 5.0915 33 1 6.0602 6.8084 6.1455 34 1 7.5685 8.1932 4.0873 35 1 9.6288 7.5724 5.9777 36 1 8.0343 8.6556 7.4626 37 1 5.5813 5.3914 3.5880 38 1 4.4861 0.0700 1.6576 39 1 3.5273 1.5199 2.1864 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12906260_13308374.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:20:14 Heat of formation + Delta-G solvation = -73.164229 kcal Electronic energy + Delta-G solvation = -21942.729467 eV Core-core repulsion = 18433.763773 eV Total energy + Delta-G solvation = -3508.965694 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 282.135 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.73512 -41.08917 -39.55308 -38.24631 -38.13610 -34.71954 -33.90889 -33.07073 -29.91238 -29.26487 -27.06743 -26.71265 -25.91449 -24.57080 -23.15675 -21.78062 -21.24715 -20.22617 -18.97740 -17.97131 -17.71064 -17.61787 -17.14541 -16.88406 -16.72115 -16.09336 -16.03722 -15.89488 -15.54263 -15.40040 -14.67953 -14.22660 -14.11717 -14.02262 -13.94123 -13.83423 -13.56150 -13.22155 -13.02891 -12.97364 -12.82921 -12.41941 -12.11568 -12.07841 -11.71173 -11.41833 -11.04205 -10.85921 -10.72172 -10.61103 -10.01002 -9.55114 -5.02332 0.31487 0.82658 1.10037 1.41844 1.67334 1.88289 2.19729 2.36611 2.76159 3.06129 3.33510 3.41358 3.54657 3.74654 3.77188 3.81847 3.85788 4.13006 4.24749 4.26260 4.31009 4.39391 4.41135 4.48897 4.51068 4.55632 4.60070 4.64687 4.69560 4.75585 4.76412 4.84218 4.98653 5.04358 5.12082 5.21503 5.28179 5.56708 5.90242 6.17506 6.18633 6.53114 7.26678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.390 6.390 3 C 0.072 3.928 4 C -0.107 4.107 5 H 0.105 0.895 6 C -0.138 4.138 7 C 0.124 3.876 8 H 0.119 0.881 9 N -0.714 5.714 10 C 0.594 3.406 11 O -0.539 6.539 12 C -0.254 4.254 13 C 0.096 3.904 14 C -0.087 4.087 15 O -0.168 6.168 16 C -0.055 4.055 17 C -0.034 4.034 18 O -0.521 6.521 19 Si 0.702 3.298 20 C -0.148 4.148 21 C -0.143 4.143 22 H 0.041 0.959 23 H 0.087 0.913 24 H 0.041 0.959 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.401 0.599 30 H 0.091 0.909 31 H 0.111 0.889 32 H 0.082 0.918 33 H 0.137 0.863 34 H 0.381 0.619 35 H -0.256 1.256 36 H -0.249 1.249 37 H 0.157 0.843 38 H 0.077 0.923 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.997 1.526 1.175 2.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.309 6.309 3 C -0.005 4.005 4 C -0.125 4.125 5 H 0.123 0.877 6 C -0.177 4.177 7 C 0.019 3.981 8 H 0.137 0.863 9 N -0.364 5.364 10 C 0.382 3.618 11 O -0.418 6.418 12 C -0.258 4.258 13 C 0.042 3.958 14 C -0.143 4.143 15 O -0.065 6.065 16 C -0.103 4.103 17 C -0.144 4.144 18 O -0.328 6.328 19 Si 0.601 3.399 20 C -0.168 4.168 21 C -0.182 4.182 22 H 0.060 0.940 23 H 0.106 0.894 24 H 0.060 0.940 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.106 0.894 28 H 0.099 0.901 29 H 0.236 0.764 30 H 0.110 0.890 31 H 0.130 0.870 32 H 0.101 0.899 33 H 0.155 0.845 34 H 0.229 0.771 35 H -0.180 1.180 36 H -0.173 1.173 37 H 0.175 0.825 38 H 0.095 0.905 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.131 1.394 1.666 2.449 hybrid contribution -0.792 1.073 -1.190 1.787 sum -1.923 2.467 0.476 3.164 Atomic orbital electron populations 1.22762 0.80817 1.03020 1.00001 1.87899 1.19816 1.27781 1.95399 1.22516 0.92829 0.84923 1.00191 1.22333 0.93106 0.98357 0.98753 0.87716 1.23369 0.97111 0.97108 1.00077 1.22525 0.96335 0.90052 0.89167 0.86296 1.45757 1.19743 1.28435 1.42474 1.17204 0.80964 0.83940 0.79669 1.90774 1.53610 1.32856 1.64527 1.21143 0.97768 1.00440 1.06487 1.22931 0.96551 0.87270 0.89001 1.20709 0.94168 0.95536 1.03871 1.83674 1.38163 1.31486 1.53169 1.22547 0.86507 0.97924 1.03343 1.24335 1.11984 0.81919 0.96125 1.86658 1.41506 1.52247 1.52353 0.94352 0.75629 0.86136 0.83782 1.22569 1.00965 0.94218 0.99033 1.23529 0.97132 1.00964 0.96580 0.94011 0.89445 0.94042 0.93170 0.93065 0.89382 0.90063 0.76447 0.89035 0.87031 0.89871 0.84531 0.77072 1.18013 1.17274 0.82491 0.90470 0.89675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 11.01 101.05 1.11 1.10 16 2 O -0.39 -0.81 10.70 -35.23 -0.38 -1.18 16 3 C 0.07 -0.02 5.77 37.16 0.21 0.20 16 4 C -0.11 0.07 4.01 -89.81 -0.36 -0.29 16 5 H 0.10 -0.01 8.14 -51.93 -0.42 -0.43 16 6 C -0.14 0.25 7.39 -25.92 -0.19 0.06 16 7 C 0.12 0.00 4.24 -67.12 -0.28 -0.28 16 8 H 0.12 0.18 7.46 -51.93 -0.39 -0.21 16 9 N -0.71 -0.14 5.35 -54.10 -0.29 -0.43 16 10 C 0.59 1.71 7.81 -12.54 -0.10 1.61 16 11 O -0.54 -3.05 14.44 5.27 0.08 -2.98 16 12 C -0.25 -0.49 6.31 -103.27 -0.65 -1.15 16 13 C 0.10 0.16 7.37 -34.97 -0.26 -0.10 16 14 C -0.09 0.01 9.89 36.01 0.36 0.36 16 15 O -0.17 -0.19 8.89 7.67 0.07 -0.13 16 16 C -0.06 -0.01 6.20 -35.74 -0.22 -0.24 16 17 C -0.03 0.04 2.97 36.00 0.11 0.15 16 18 O -0.52 0.12 12.86 -35.23 -0.45 -0.34 16 19 Si 0.70 -0.92 32.09 -169.99 -5.45 -6.37 16 20 C -0.15 -0.04 10.46 -37.45 -0.39 -0.44 16 21 C -0.14 0.00 7.43 -25.92 -0.19 -0.19 16 22 H 0.04 -0.05 8.14 -51.93 -0.42 -0.47 16 23 H 0.09 -0.10 8.14 -51.93 -0.42 -0.52 16 24 H 0.04 -0.05 8.14 -51.93 -0.42 -0.47 16 25 H 0.05 -0.05 7.84 -51.93 -0.41 -0.46 16 26 H 0.05 -0.05 8.14 -51.93 -0.42 -0.48 16 27 H 0.09 -0.26 8.08 -51.93 -0.42 -0.68 16 28 H 0.08 -0.16 8.14 -51.93 -0.42 -0.59 16 29 H 0.40 -0.80 7.90 -40.82 -0.32 -1.13 16 30 H 0.09 -0.06 8.14 -51.93 -0.42 -0.49 16 31 H 0.11 0.13 6.49 -51.93 -0.34 -0.20 16 32 H 0.08 -0.16 8.14 -51.93 -0.42 -0.58 16 33 H 0.14 -0.37 7.96 -51.93 -0.41 -0.79 16 34 H 0.38 -1.06 8.70 45.56 0.40 -0.66 16 35 H -0.26 -0.37 7.11 56.52 0.40 0.03 16 36 H -0.25 -0.30 7.11 56.52 0.40 0.10 16 37 H 0.16 -0.27 7.74 -52.48 -0.41 -0.67 16 38 H 0.08 0.09 8.14 -51.93 -0.42 -0.33 16 39 H 0.08 -0.03 7.90 -51.93 -0.41 -0.44 16 LS Contribution 332.77 15.07 5.01 5.01 Total: 0.00 -7.10 332.77 -7.98 -15.08 By element: Atomic # 1 Polarization: -3.77 SS G_CDS: -5.71 Total: -9.48 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -0.86 Total: 0.80 kcal Atomic # 7 Polarization: -0.14 SS G_CDS: -0.29 Total: -0.43 kcal Atomic # 8 Polarization: -3.93 SS G_CDS: -0.69 Total: -4.62 kcal Atomic # 14 Polarization: -0.92 SS G_CDS: -5.45 Total: -6.37 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -7.10 -7.98 -15.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12906260_13308374.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.080 kcal (2) G-P(sol) polarization free energy of solvation -7.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds