Wall clock time and date at job start Tue Mar 9 2021 13:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99998 * 2 1 4 4 C 1.53005 * 109.47355 * 180.02562 * 3 2 1 5 5 H 1.08996 * 112.84666 * 43.80057 * 4 3 2 6 6 C 1.53775 * 113.61451 * 175.00032 * 4 3 2 7 7 C 1.53783 * 87.07996 * 139.97898 * 6 4 3 8 8 H 1.09004 * 113.61178 * 89.20150 * 7 6 4 9 9 N 1.46497 * 113.61590 * 220.01552 * 7 6 4 10 10 C 1.34773 * 119.99933 * 205.00320 * 9 7 6 11 11 O 1.21610 * 120.00252 * 359.97438 * 10 9 7 12 12 C 1.47386 * 120.00112 * 180.02562 * 10 9 7 13 13 C 1.36411 * 127.19527 * 179.97438 * 12 10 9 14 14 C 1.50703 * 125.80010 * 359.97438 * 13 12 10 15 15 O 1.33646 * 108.39825 * 180.26336 * 13 12 10 16 16 C 1.34216 * 110.90996 * 359.59195 * 15 13 12 17 17 C 1.50696 * 125.44367 * 180.17098 * 16 15 13 18 18 O 1.42899 * 109.47447 * 120.27736 * 17 16 15 19 19 Si 1.86306 * 109.46958 * 0.28117 * 17 16 15 20 20 C 1.34180 * 109.12234 * 0.41426 * 16 15 13 21 21 C 1.53775 * 113.61030 * 272.50088 * 4 3 2 22 22 H 1.08996 * 109.47230 * 60.00217 * 1 2 3 23 23 H 1.08999 * 109.46846 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47083 * 299.99983 * 1 2 3 25 25 H 1.09003 * 109.47296 * 59.99987 * 3 2 1 26 26 H 1.08997 * 109.47122 * 300.00137 * 3 2 1 27 27 H 1.09003 * 113.61715 * 25.43695 * 6 4 3 28 28 H 1.09002 * 113.61716 * 254.52963 * 6 4 3 29 29 H 0.97005 * 119.99871 * 25.00683 * 9 7 6 30 30 H 1.09002 * 109.47152 * 89.99913 * 14 13 12 31 31 H 1.09001 * 109.46980 * 330.00014 * 14 13 12 32 32 H 1.09004 * 109.47113 * 209.99994 * 14 13 12 33 33 H 1.08997 * 109.47241 * 240.28301 * 17 16 15 34 34 H 0.96697 * 114.00186 * 300.00322 * 18 17 16 35 35 H 1.48501 * 110.00045 * 58.67795 * 19 17 16 36 36 H 1.48498 * 110.00046 * 180.02562 * 19 17 16 37 37 H 1.08003 * 127.02533 * 179.78506 * 20 16 15 38 38 H 1.09003 * 113.61807 * 105.47317 * 21 4 3 39 39 H 1.08995 * 113.61802 * 334.56201 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 1 3.8999 0.4287 -0.6962 6 6 4.2603 2.5353 -0.1235 7 6 5.2678 1.9992 0.9072 8 1 6.1077 1.4668 0.4607 9 7 5.6872 2.9987 1.8928 10 6 6.8766 2.8744 2.5143 11 8 7.6015 1.9324 2.2574 12 6 7.2983 3.8796 3.5063 13 6 8.4618 3.8982 4.2181 14 6 9.5657 2.8761 4.1298 15 8 8.4537 4.9735 5.0117 16 6 7.3251 5.6812 4.8479 17 6 6.9783 6.9541 5.5763 18 8 6.7900 8.0082 4.6301 19 14 8.3643 7.4023 6.7377 20 6 6.5524 5.0716 3.9359 21 6 4.1452 1.0745 1.4068 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6886 1.8464 0.8900 26 1 1.6886 1.8464 -0.8899 27 1 3.6738 3.3801 0.2379 28 1 4.6941 2.7102 -1.1081 29 1 5.1088 3.7499 2.0980 30 1 10.2792 3.1773 3.3628 31 1 9.1423 1.9055 3.8711 32 1 10.0739 2.8061 5.0915 33 1 6.0602 6.8084 6.1455 34 1 7.5685 8.1932 4.0873 35 1 9.6288 7.5724 5.9777 36 1 8.0343 8.6556 7.4626 37 1 5.5813 5.3914 3.5880 38 1 4.4861 0.0700 1.6576 39 1 3.5273 1.5199 2.1864 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12906260_13308374.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:20:13 Heat of formation + Delta-G solvation = -72.305383 kcal Electronic energy + Delta-G solvation = -21942.692225 eV Core-core repulsion = 18433.763773 eV Total energy + Delta-G solvation = -3508.928452 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 282.135 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.77534 -41.15206 -39.65441 -38.22359 -38.13373 -34.84775 -33.95115 -33.07751 -29.89320 -29.23425 -27.03994 -26.67444 -25.91497 -24.59910 -23.17067 -21.83505 -21.29036 -20.23784 -18.96644 -18.01376 -17.74072 -17.62758 -17.15399 -16.86828 -16.74945 -16.11465 -16.07238 -15.87259 -15.60983 -15.44274 -14.77462 -14.24266 -14.16997 -14.00970 -13.93257 -13.81888 -13.47007 -13.20204 -12.99249 -12.92875 -12.82522 -12.40648 -12.18535 -12.06905 -11.66790 -11.41299 -11.13930 -10.95658 -10.74146 -10.59623 -10.09300 -9.58299 -4.93847 0.21733 0.81446 1.17972 1.41897 1.69950 1.91292 2.14800 2.21987 2.81684 3.16426 3.38040 3.44561 3.59527 3.72232 3.77009 3.81481 3.89631 4.11170 4.30840 4.37882 4.39136 4.46713 4.48246 4.53807 4.58270 4.59114 4.65012 4.69482 4.74588 4.80116 4.83132 4.85065 5.00065 5.04547 5.13555 5.20896 5.27140 5.55075 5.88204 6.23631 6.33539 6.48530 7.15011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.070 3.930 4 C -0.105 4.105 5 H 0.095 0.905 6 C -0.121 4.121 7 C 0.118 3.882 8 H 0.099 0.901 9 N -0.701 5.701 10 C 0.588 3.412 11 O -0.576 6.576 12 C -0.270 4.270 13 C 0.085 3.915 14 C -0.085 4.085 15 O -0.172 6.172 16 C -0.058 4.058 17 C -0.031 4.031 18 O -0.533 6.533 19 Si 0.769 3.231 20 C -0.146 4.146 21 C -0.142 4.142 22 H 0.050 0.950 23 H 0.090 0.910 24 H 0.049 0.951 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.108 0.892 28 H 0.086 0.914 29 H 0.413 0.587 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.158 0.842 34 H 0.390 0.610 35 H -0.295 1.295 36 H -0.282 1.282 37 H 0.178 0.822 38 H 0.058 0.942 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.136 2.512 1.304 4.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.338 6.338 3 C -0.007 4.007 4 C -0.124 4.124 5 H 0.113 0.887 6 C -0.159 4.159 7 C 0.014 3.986 8 H 0.117 0.883 9 N -0.351 5.351 10 C 0.377 3.623 11 O -0.458 6.458 12 C -0.274 4.274 13 C 0.032 3.968 14 C -0.141 4.141 15 O -0.069 6.069 16 C -0.106 4.106 17 C -0.141 4.141 18 O -0.341 6.341 19 Si 0.673 3.327 20 C -0.165 4.165 21 C -0.181 4.181 22 H 0.068 0.932 23 H 0.108 0.892 24 H 0.068 0.932 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.126 0.874 28 H 0.105 0.895 29 H 0.251 0.749 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.120 0.880 33 H 0.175 0.825 34 H 0.240 0.760 35 H -0.222 1.222 36 H -0.209 1.209 37 H 0.196 0.804 38 H 0.077 0.923 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.307 2.389 1.791 3.773 hybrid contribution -0.420 0.794 -1.232 1.525 sum -2.726 3.183 0.559 4.228 Atomic orbital electron populations 1.22885 0.79798 1.03562 1.00809 1.87860 1.21136 1.29231 1.95595 1.22625 0.92585 0.84314 1.01141 1.22287 0.93302 0.98918 0.97912 0.88720 1.23304 0.95993 0.96951 0.99682 1.22507 0.96002 0.90354 0.89772 0.88302 1.45675 1.19068 1.28615 1.41731 1.17442 0.81327 0.83702 0.79823 1.90753 1.54821 1.34356 1.65831 1.21230 0.98483 1.01012 1.06683 1.23222 0.96972 0.87614 0.89034 1.20708 0.93931 0.94451 1.05036 1.83676 1.38668 1.31456 1.53105 1.22853 0.86147 0.98181 1.03449 1.24476 1.12852 0.81044 0.95696 1.86637 1.42424 1.52391 1.52674 0.93511 0.73067 0.84228 0.81913 1.22790 1.01655 0.93341 0.98757 1.23515 0.97232 1.00010 0.97307 0.93166 0.89171 0.93222 0.92140 0.92063 0.87413 0.89495 0.74941 0.88593 0.88507 0.88006 0.82474 0.75979 1.22214 1.20862 0.80435 0.92267 0.88934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 11.01 113.37 1.25 1.22 16 2 O -0.42 -1.75 10.70 -148.98 -1.59 -3.34 16 3 C 0.07 -0.08 5.77 71.98 0.42 0.33 16 4 C -0.11 0.13 4.01 -10.27 -0.04 0.09 16 5 H 0.09 0.07 8.14 -2.39 -0.02 0.05 16 6 C -0.12 0.55 7.39 31.12 0.23 0.78 16 7 C 0.12 0.06 4.24 45.52 0.19 0.25 16 8 H 0.10 0.48 7.46 -2.38 -0.02 0.47 16 9 N -0.70 -0.29 5.35 -443.34 -2.37 -2.66 16 10 C 0.59 3.90 7.81 86.65 0.68 4.58 16 11 O -0.58 -7.64 14.44 -4.06 -0.06 -7.70 16 12 C -0.27 -1.12 6.31 -18.99 -0.12 -1.24 16 13 C 0.09 0.32 7.37 25.26 0.19 0.51 16 14 C -0.09 -0.07 9.89 71.24 0.70 0.64 16 15 O -0.17 -0.38 8.89 4.51 0.04 -0.34 16 16 C -0.06 0.02 6.20 24.76 0.15 0.17 16 17 C -0.03 0.11 2.97 71.23 0.21 0.32 16 18 O -0.53 0.84 12.86 -148.98 -1.92 -1.08 16 19 Si 0.77 -2.07 32.09 68.60 2.20 0.13 16 20 C -0.15 0.05 10.46 23.65 0.25 0.30 16 21 C -0.14 -0.07 7.43 31.12 0.23 0.16 16 22 H 0.05 -0.16 8.14 -2.39 -0.02 -0.18 16 23 H 0.09 -0.21 8.14 -2.39 -0.02 -0.23 16 24 H 0.05 -0.15 8.14 -2.39 -0.02 -0.17 16 25 H 0.06 -0.20 7.84 -2.39 -0.02 -0.22 16 26 H 0.06 -0.20 8.14 -2.39 -0.02 -0.22 16 27 H 0.11 -0.88 8.08 -2.39 -0.02 -0.90 16 28 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 29 H 0.41 -2.10 7.90 -92.70 -0.73 -2.83 16 30 H 0.10 -0.04 8.14 -2.39 -0.02 -0.06 16 31 H 0.10 0.41 6.49 -2.39 -0.02 0.39 16 32 H 0.10 -0.36 8.14 -2.38 -0.02 -0.38 16 33 H 0.16 -1.19 7.96 -2.39 -0.02 -1.21 16 34 H 0.39 -2.43 8.70 -74.06 -0.64 -3.07 16 35 H -0.30 -1.14 7.11 99.48 0.71 -0.43 16 36 H -0.28 -0.82 7.11 99.48 0.71 -0.11 16 37 H 0.18 -0.95 7.74 -2.91 -0.02 -0.97 16 38 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 39 H 0.09 -0.09 7.90 -2.39 -0.02 -0.11 16 Total: 0.00 -17.66 332.77 0.37 -17.29 By element: Atomic # 1 Polarization: -10.15 SS G_CDS: -0.27 Total: -10.42 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: 4.34 Total: 8.11 kcal Atomic # 7 Polarization: -0.29 SS G_CDS: -2.37 Total: -2.66 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: -3.53 Total: -12.45 kcal Atomic # 14 Polarization: -2.07 SS G_CDS: 2.20 Total: 0.13 kcal Total: -17.66 0.37 -17.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12906260_13308374.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.012 kcal (2) G-P(sol) polarization free energy of solvation -17.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds