Wall clock time and date at job start Tue Mar 9 2021 13:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42907 * 113.99893 * 2 1 4 4 C 1.52999 * 109.46597 * 179.97438 * 3 2 1 5 5 H 1.08999 * 112.90747 * 43.75199 * 4 3 2 6 6 C 1.53783 * 113.61092 * 174.99857 * 4 3 2 7 7 C 1.53771 * 87.08300 * 139.98278 * 6 4 3 8 8 H 1.09006 * 113.61888 * 89.19749 * 7 6 4 9 9 N 1.46500 * 113.61578 * 220.01935 * 7 6 4 10 10 C 1.34779 * 120.00169 * 204.99635 * 9 7 6 11 11 O 1.21282 * 119.99922 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00037 * 180.02562 * 10 9 7 13 13 O 1.42905 * 109.46972 * 180.02562 * 12 10 9 14 14 C 1.35896 * 117.00039 * 180.02562 * 13 12 10 15 15 C 1.38709 * 120.05698 * 179.72061 * 14 13 12 16 16 N 1.47999 * 120.02668 * 0.02562 * 15 14 13 17 17 O 1.21809 * 119.99780 * 179.97438 * 16 15 14 18 18 O 1.21798 * 120.00075 * 359.97438 * 16 15 14 19 19 C 1.38166 * 119.94125 * 179.74409 * 15 14 13 20 20 C 1.38248 * 120.05857 * 0.53655 * 19 15 14 21 21 C 1.50703 * 119.94503 * 179.72483 * 20 19 15 22 22 O 1.42904 * 109.46886 * 300.01667 * 21 20 19 23 23 Si 1.86300 * 109.46884 * 180.02562 * 21 20 19 24 24 C 1.38281 * 120.10966 * 359.73955 * 20 19 15 25 25 C 1.38131 * 120.05780 * 359.97438 * 24 20 19 26 26 C 1.53779 * 113.61804 * 272.49264 * 4 3 2 27 27 H 1.09001 * 109.47045 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47394 * 300.00807 * 1 2 3 29 29 H 1.09003 * 109.46414 * 60.00616 * 1 2 3 30 30 H 1.09003 * 109.47004 * 59.99855 * 3 2 1 31 31 H 1.08994 * 109.46609 * 299.99573 * 3 2 1 32 32 H 1.09001 * 113.61429 * 25.43036 * 6 4 3 33 33 H 1.09000 * 113.69015 * 254.54483 * 6 4 3 34 34 H 0.96996 * 119.99986 * 25.00232 * 9 7 6 35 35 H 1.09000 * 109.47247 * 60.00371 * 12 10 9 36 36 H 1.09001 * 109.47358 * 299.99798 * 12 10 9 37 37 H 1.08009 * 119.97192 * 180.27221 * 19 15 14 38 38 H 1.08997 * 109.47353 * 60.01185 * 21 20 19 39 39 H 0.96703 * 113.99524 * 300.00386 * 22 21 20 40 40 H 1.48504 * 110.00017 * 58.67839 * 23 21 20 41 41 H 1.48498 * 109.99618 * 179.97438 * 23 21 20 42 42 H 1.07996 * 119.97402 * 180.02562 * 24 20 19 43 43 H 1.07996 * 120.02918 * 180.02562 * 25 24 20 44 44 H 1.09001 * 113.61225 * 105.47645 * 26 4 3 45 45 H 1.09003 * 113.61255 * 334.57736 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.9014 0.4280 -0.6934 6 6 4.2605 2.5352 -0.1222 7 6 5.2672 1.9996 0.9094 8 1 6.1074 1.4668 0.4638 9 7 5.6858 2.9994 1.8950 10 6 6.8747 2.8754 2.5176 11 8 7.5982 1.9362 2.2617 12 6 7.3050 3.9036 3.5319 13 8 8.5915 3.5549 4.0472 14 6 9.1280 4.3848 4.9800 15 6 10.3712 4.1037 5.5272 16 7 11.1154 2.8995 5.0951 17 8 12.2073 2.6534 5.5756 18 8 10.6359 2.1547 4.2592 19 6 10.9168 4.9519 6.4716 20 6 10.2199 6.0740 6.8794 21 6 10.8147 6.9941 7.9142 22 8 11.0402 6.2678 9.1241 23 14 9.6382 8.4004 8.2444 24 6 8.9778 6.3534 6.3397 25 6 8.4305 5.5118 5.3909 26 6 4.1442 1.0751 1.4086 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 1.6886 1.8464 0.8900 31 1 1.6887 1.8463 -0.8900 32 1 3.6737 3.3802 0.2383 33 1 4.6953 2.7110 -1.1061 34 1 5.1073 3.7506 2.0995 35 1 6.5825 3.9339 4.3475 36 1 7.3577 4.8830 3.0565 37 1 11.8868 4.7358 6.8947 38 1 11.7612 7.3906 7.5468 39 1 10.2393 5.8857 9.5085 40 1 8.3333 7.8709 8.7157 41 1 10.2129 9.3146 9.2637 42 1 8.4355 7.2308 6.6596 43 1 7.4606 5.7307 4.9694 44 1 4.4849 0.0707 1.6600 45 1 3.5256 1.5207 2.1876 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12906260_4549638.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:22:47 Heat of formation + Delta-G solvation = -88.509114 kcal Electronic energy + Delta-G solvation = -30639.380350 eV Core-core repulsion = 26014.969056 eV Total energy + Delta-G solvation = -4624.411293 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 353.144 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.29331 -41.80776 -41.12956 -40.01059 -39.24235 -38.17577 -37.62201 -37.45844 -34.75811 -33.47433 -32.26188 -30.46786 -29.11942 -27.82337 -26.95435 -26.66437 -26.45983 -24.35710 -23.35141 -22.74160 -21.72354 -20.69110 -20.50412 -19.77667 -19.18691 -18.63891 -18.45138 -18.19048 -17.67850 -17.55478 -17.25638 -16.98270 -16.79960 -16.37784 -16.19211 -15.99146 -15.77604 -15.61241 -15.52976 -14.98423 -14.74954 -14.12727 -14.03550 -13.78970 -13.67400 -13.43163 -13.22470 -13.19701 -12.96576 -12.70944 -12.42631 -12.38288 -12.34636 -12.27626 -12.21227 -12.06812 -11.81097 -11.65021 -11.40390 -10.97626 -10.83534 -10.75326 -10.58061 -10.10890 -9.79592 -4.91489 -1.31512 -0.23982 0.15698 0.35668 1.22244 1.27414 1.44991 1.61056 2.02542 2.05361 2.33829 2.83284 3.11581 3.25227 3.35322 3.44848 3.46170 3.59402 3.66280 3.71864 3.76917 3.80008 3.91092 3.93500 4.03892 4.29236 4.32859 4.39842 4.40074 4.49697 4.54350 4.56224 4.61301 4.64263 4.72336 4.78450 4.83829 4.84378 4.86194 5.01384 5.07722 5.07859 5.19515 5.23718 5.54502 5.76954 6.26006 6.41237 6.44783 6.47597 7.17734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.422 6.422 3 C 0.070 3.930 4 C -0.110 4.110 5 H 0.087 0.913 6 C -0.115 4.115 7 C 0.118 3.882 8 H 0.089 0.911 9 N -0.696 5.696 10 C 0.506 3.494 11 O -0.569 6.569 12 C 0.025 3.975 13 O -0.293 6.293 14 C 0.194 3.806 15 C -0.105 4.105 16 N 0.034 4.966 17 O -0.203 6.203 18 O -0.175 6.175 19 C -0.004 4.004 20 C -0.148 4.148 21 C -0.092 4.092 22 O -0.551 6.551 23 Si 0.791 3.209 24 C -0.004 4.004 25 C -0.188 4.188 26 C -0.144 4.144 27 H 0.087 0.913 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.118 0.882 33 H 0.085 0.915 34 H 0.424 0.576 35 H 0.144 0.856 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.127 0.873 39 H 0.389 0.611 40 H -0.261 1.261 41 H -0.310 1.310 42 H 0.190 0.810 43 H 0.208 0.792 44 H 0.050 0.950 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.709 13.636 -0.528 18.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.342 6.342 3 C -0.006 4.006 4 C -0.130 4.130 5 H 0.106 0.894 6 C -0.153 4.153 7 C 0.013 3.987 8 H 0.107 0.893 9 N -0.350 5.350 10 C 0.292 3.708 11 O -0.446 6.446 12 C -0.052 4.052 13 O -0.203 6.203 14 C 0.144 3.856 15 C -0.190 4.190 16 N 0.544 4.456 17 O -0.411 6.411 18 O -0.388 6.388 19 C -0.023 4.023 20 C -0.149 4.149 21 C -0.198 4.198 22 O -0.360 6.360 23 Si 0.694 3.306 24 C -0.021 4.021 25 C -0.206 4.206 26 C -0.182 4.182 27 H 0.106 0.894 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.137 0.863 33 H 0.103 0.897 34 H 0.263 0.737 35 H 0.161 0.839 36 H 0.166 0.834 37 H 0.167 0.833 38 H 0.145 0.855 39 H 0.238 0.762 40 H -0.186 1.186 41 H -0.238 1.238 42 H 0.206 0.794 43 H 0.224 0.776 44 H 0.069 0.931 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -12.198 13.720 -0.141 18.359 hybrid contribution 0.320 -1.630 0.680 1.795 sum -11.878 12.090 0.539 16.957 Atomic orbital electron populations 1.22880 0.79769 1.03476 1.00895 1.87871 1.21180 1.29522 1.95617 1.22643 0.92381 0.84215 1.01365 1.22310 0.93512 0.99250 0.97882 0.89441 1.23288 0.95645 0.96862 0.99513 1.22435 0.95739 0.90534 0.89994 0.89315 1.45606 1.18766 1.28966 1.41655 1.20619 0.81810 0.86272 0.82089 1.90852 1.54439 1.34708 1.64645 1.23149 0.83776 0.99599 0.98667 1.86477 1.34812 1.47281 1.51728 1.18988 0.89291 0.90253 0.87082 1.20873 0.95628 0.92460 1.10088 1.43922 1.00450 1.02355 0.98896 1.94503 1.08309 1.79575 1.58688 1.94682 1.71202 1.46398 1.26565 1.20843 1.00331 0.91106 0.90006 1.20382 0.96298 0.96561 1.01666 1.25537 1.10792 1.00249 0.83267 1.86636 1.38188 1.71911 1.39231 0.94176 0.74526 0.75063 0.86882 1.21725 0.92091 0.97793 0.90521 1.21821 1.03730 0.92965 1.02106 1.23546 0.97348 0.99839 0.97497 0.89428 0.93033 0.93109 0.91642 0.91990 0.86333 0.89679 0.73678 0.83884 0.83417 0.83268 0.85528 0.76160 1.18635 1.23833 0.79366 0.77558 0.93100 0.88071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.06 11.01 113.37 1.25 1.19 16 2 O -0.42 -1.29 10.70 -148.98 -1.59 -2.89 16 3 C 0.07 -0.24 5.78 71.98 0.42 0.18 16 4 C -0.11 0.34 4.01 -10.27 -0.04 0.30 16 5 H 0.09 0.03 8.14 -2.39 -0.02 0.01 16 6 C -0.12 0.94 7.39 31.12 0.23 1.17 16 7 C 0.12 -0.30 4.24 45.51 0.19 -0.11 16 8 H 0.09 0.39 7.46 -2.38 -0.02 0.37 16 9 N -0.70 4.77 5.35 -440.05 -2.36 2.42 16 10 C 0.51 0.43 7.91 87.66 0.69 1.13 16 11 O -0.57 -8.78 16.10 16.00 0.26 -8.53 16 12 C 0.02 -0.20 5.22 71.24 0.37 0.17 16 13 O -0.29 -1.24 7.68 -63.36 -0.49 -1.73 16 14 C 0.19 0.03 6.67 22.51 0.15 0.18 16 15 C -0.11 -0.73 6.87 36.47 0.25 -0.48 16 16 N 0.03 0.58 4.45 -46.25 -0.21 0.38 16 17 O -0.20 -3.88 18.45 18.87 0.35 -3.53 16 18 O -0.17 -3.87 17.24 25.61 0.44 -3.43 16 19 C 0.00 -0.01 9.11 22.25 0.20 0.20 16 20 C -0.15 0.91 5.39 -19.85 -0.11 0.80 16 21 C -0.09 0.61 2.82 71.24 0.20 0.81 16 22 O -0.55 0.84 12.77 -148.98 -1.90 -1.06 16 23 Si 0.79 -8.32 29.78 68.60 2.04 -6.27 16 24 C 0.00 0.05 8.66 22.25 0.19 0.24 16 25 C -0.19 2.18 9.04 22.37 0.20 2.38 16 26 C -0.14 0.26 7.43 31.12 0.23 0.49 16 27 H 0.09 -0.26 8.14 -2.39 -0.02 -0.28 16 28 H 0.05 -0.25 8.14 -2.39 -0.02 -0.26 16 29 H 0.05 -0.23 8.14 -2.39 -0.02 -0.24 16 30 H 0.07 -0.44 7.84 -2.39 -0.02 -0.45 16 31 H 0.06 -0.34 8.14 -2.39 -0.02 -0.36 16 32 H 0.12 -1.63 8.08 -2.39 -0.02 -1.65 16 33 H 0.08 -0.67 8.14 -2.39 -0.02 -0.69 16 34 H 0.42 -6.94 8.73 -92.71 -0.81 -7.75 16 35 H 0.14 -2.40 7.66 -2.39 -0.02 -2.41 16 36 H 0.15 -2.57 7.66 -2.39 -0.02 -2.59 16 37 H 0.15 0.57 7.61 -2.91 -0.02 0.55 16 38 H 0.13 -0.90 7.96 -2.39 -0.02 -0.92 16 39 H 0.39 -3.05 8.70 -74.06 -0.64 -3.70 16 40 H -0.26 2.45 7.11 99.48 0.71 3.16 16 41 H -0.31 0.10 7.11 99.48 0.71 0.80 16 42 H 0.19 -3.79 4.87 -2.91 -0.01 -3.81 16 43 H 0.21 -4.53 6.30 -2.91 -0.02 -4.55 16 44 H 0.05 0.19 8.14 -2.39 -0.02 0.17 16 45 H 0.10 -0.52 7.90 -2.39 -0.02 -0.54 16 Total: 0.00 -41.79 386.06 0.62 -41.17 By element: Atomic # 1 Polarization: -24.81 SS G_CDS: -0.36 Total: -25.17 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: 4.43 Total: 8.64 kcal Atomic # 7 Polarization: 5.35 SS G_CDS: -2.56 Total: 2.79 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -2.94 Total: -21.16 kcal Atomic # 14 Polarization: -8.32 SS G_CDS: 2.04 Total: -6.27 kcal Total: -41.79 0.62 -41.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12906260_4549638.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.340 kcal (2) G-P(sol) polarization free energy of solvation -41.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds