Wall clock time and date at job start Tue Mar 9 2021 13:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42103 * 108.57817 * 2 1 4 4 O 1.42095 * 108.57926 * 228.97257 * 2 1 3 5 5 C 1.81401 * 101.92284 * 114.48256 * 2 1 3 6 6 H 1.08997 * 112.90910 * 311.25568 * 5 2 1 7 7 C 1.53782 * 113.60864 * 82.50576 * 5 2 1 8 8 C 1.53785 * 87.08021 * 139.98309 * 7 5 2 9 9 H 1.08995 * 113.69036 * 220.00670 * 8 7 5 10 10 N 1.46497 * 113.61502 * 89.11302 * 8 7 5 11 11 C 1.34778 * 120.00279 * 107.50408 * 10 8 7 12 12 O 1.21586 * 119.99469 * 0.02562 * 11 10 8 13 13 C 1.47555 * 120.00387 * 179.97438 * 11 10 8 14 14 C 1.40210 * 120.12537 * 180.25490 * 13 11 10 15 15 O 1.35649 * 120.00301 * 0.02562 * 14 13 11 16 16 C 1.38821 * 119.99693 * 180.27864 * 14 13 11 17 17 C 1.37765 * 120.24532 * 359.74522 * 16 14 13 18 18 C 1.39840 * 120.24410 * 359.97438 * 17 16 14 19 19 C 1.47819 * 120.00109 * 180.02562 * 18 17 16 20 20 C 1.35937 * 125.92744 * 359.69045 * 19 18 17 21 21 C 1.40971 * 106.74229 * 179.88989 * 20 19 18 22 22 C 1.34710 * 107.02350 * 0.37682 * 21 20 19 23 23 C 1.50702 * 125.66147 * 179.74432 * 22 21 20 24 24 O 1.42908 * 109.47068 * 65.00126 * 23 22 21 25 25 Si 1.86299 * 109.47431 * 185.00089 * 23 22 21 26 26 O 1.34336 * 108.67609 * 359.76946 * 22 21 20 27 27 C 1.39180 * 120.00251 * 359.97438 * 18 17 16 28 28 C 1.53780 * 113.61316 * 180.02562 * 5 2 1 29 29 H 1.08995 * 109.47076 * 305.51502 * 1 2 3 30 30 H 1.09007 * 109.47093 * 65.51578 * 1 2 3 31 31 H 1.09002 * 109.47097 * 185.51686 * 1 2 3 32 32 H 1.08996 * 113.61998 * 25.43181 * 7 5 2 33 33 H 1.09007 * 113.60972 * 254.52604 * 7 5 2 34 34 H 0.96997 * 120.00024 * 287.50322 * 10 8 7 35 35 H 0.96699 * 114.00237 * 270.25716 * 15 14 13 36 36 H 1.08006 * 119.87762 * 179.71840 * 16 14 13 37 37 H 1.08005 * 119.87608 * 180.02562 * 17 16 14 38 38 H 1.07997 * 126.62874 * 0.02562 * 20 19 18 39 39 H 1.07994 * 126.48686 * 180.13811 * 21 20 19 40 40 H 1.08997 * 109.47239 * 305.00387 * 23 22 21 41 41 H 0.96696 * 113.99718 * 59.99497 * 24 23 22 42 42 H 1.48495 * 110.00500 * 180.02562 * 25 23 22 43 43 H 1.48509 * 109.99771 * 301.32027 * 25 23 22 44 44 H 1.08002 * 120.12014 * 180.02562 * 27 18 17 45 45 H 1.08994 * 113.61385 * 105.47509 * 28 5 2 46 46 H 1.08994 * 113.69512 * 334.57903 * 28 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0161 5 6 2.1887 -0.7355 1.6153 6 1 1.6286 -0.2773 2.4304 7 6 2.1362 -2.2725 1.6193 8 6 3.3796 -2.2343 2.5233 9 1 4.1166 -3.0017 2.2870 10 7 3.0644 -2.1691 3.9525 11 6 3.2598 -3.2484 4.7357 12 8 3.6983 -4.2761 4.2560 13 6 2.9428 -3.1826 6.1753 14 6 3.1502 -4.3023 6.9934 15 8 3.6436 -5.4486 6.4619 16 6 2.8456 -4.2392 8.3463 17 6 2.3443 -3.0775 8.8913 18 6 2.1390 -1.9530 8.0859 19 6 1.6013 -0.7091 8.6765 20 6 1.2612 -0.5271 9.9799 21 6 0.8004 0.8000 10.0979 22 6 0.8736 1.3533 8.8719 23 6 0.4773 2.7640 8.5196 24 8 1.3427 3.6832 9.1893 25 14 0.6187 3.0072 6.6780 26 8 1.3579 0.4387 8.0154 27 6 2.4419 -2.0045 6.7285 28 6 3.6946 -0.8641 1.8991 29 1 -0.3633 0.5970 0.8364 30 1 -0.3634 0.4259 -0.9353 31 1 -0.3633 -1.0229 0.0988 32 1 2.3204 -2.7183 0.6419 33 1 1.2515 -2.6777 2.1106 34 1 2.7150 -1.3491 4.3352 35 1 2.9647 -6.0549 6.1355 36 1 3.0018 -5.1043 8.9738 37 1 2.1097 -3.0350 9.9447 38 1 1.3324 -1.2573 10.7725 39 1 0.4509 1.2806 10.9996 40 1 -0.5520 2.9409 8.8315 41 1 2.2765 3.5831 8.9592 42 1 0.2312 4.3947 6.3176 43 1 2.0105 2.7379 6.2355 44 1 2.2844 -1.1369 6.1047 45 1 4.0678 -0.1329 2.6161 46 1 4.3064 -0.9246 0.9991 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12912156_13259648.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:27:46 Heat of formation + Delta-G solvation = -87.361441 kcal Electronic energy + Delta-G solvation = -34423.856596 eV Core-core repulsion = 29569.394805 eV Total energy + Delta-G solvation = -4854.461791 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 394.106 amu Computer time = 4.51 seconds Orbital eigenvalues (eV) -43.80528 -41.81718 -40.61860 -38.98770 -38.29034 -38.01476 -37.88887 -37.06620 -34.71558 -34.21879 -32.85340 -32.36132 -30.71901 -30.16187 -27.21930 -27.14593 -26.50927 -25.26826 -23.70631 -23.08025 -22.10038 -21.34980 -21.15650 -19.82482 -19.74593 -19.27855 -18.66055 -18.16559 -17.65943 -17.57311 -17.35090 -17.25743 -16.98818 -16.73188 -16.57226 -16.36541 -15.96809 -15.90014 -15.71309 -15.34271 -14.68789 -14.61045 -14.52518 -14.41427 -14.31168 -14.12955 -14.07984 -13.96676 -13.87492 -13.84484 -13.58960 -13.35038 -13.24106 -13.12952 -13.02092 -12.97790 -12.30358 -12.19920 -12.16132 -12.01801 -11.91585 -11.24670 -11.16579 -10.92090 -10.89831 -10.56712 -10.43712 -10.23765 -9.01641 -5.14623 -1.10831 -0.66969 -0.34324 0.66752 1.00363 1.35204 1.38713 1.58661 1.59498 1.80224 1.82115 1.83917 2.39922 2.51295 2.65826 2.97850 2.98117 3.05151 3.16204 3.19339 3.32607 3.41524 3.47763 3.55769 3.72452 3.76593 3.86673 3.87678 3.88862 4.04615 4.20250 4.24632 4.28077 4.29662 4.38846 4.48465 4.50872 4.54249 4.56654 4.60771 4.66427 4.71745 4.75552 4.89802 4.99971 5.05042 5.28904 5.31452 5.34271 5.87036 6.14222 6.26650 6.57620 7.05277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.654 4.654 2 S 2.424 3.576 3 O -0.937 6.937 4 O -0.933 6.933 5 C -0.612 4.612 6 H 0.151 0.849 7 C -0.125 4.125 8 C 0.134 3.866 9 H 0.118 0.882 10 N -0.713 5.713 11 C 0.564 3.436 12 O -0.510 6.510 13 C -0.165 4.165 14 C 0.182 3.818 15 O -0.475 6.475 16 C -0.148 4.148 17 C -0.052 4.052 18 C -0.033 4.033 19 C 0.034 3.966 20 C -0.187 4.187 21 C -0.169 4.169 22 C -0.049 4.049 23 C -0.034 4.034 24 O -0.520 6.520 25 Si 0.695 3.305 26 O -0.166 6.166 27 C -0.055 4.055 28 C -0.114 4.114 29 H 0.129 0.871 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.117 0.883 33 H 0.091 0.909 34 H 0.400 0.600 35 H 0.400 0.600 36 H 0.147 0.853 37 H 0.141 0.859 38 H 0.155 0.845 39 H 0.155 0.845 40 H 0.137 0.863 41 H 0.381 0.619 42 H -0.247 1.247 43 H -0.254 1.254 44 H 0.135 0.865 45 H 0.095 0.905 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.038 -1.010 3.724 7.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.804 4.804 2 S 2.606 3.394 3 O -0.935 6.935 4 O -0.930 6.930 5 C -0.721 4.721 6 H 0.169 0.831 7 C -0.165 4.165 8 C 0.028 3.972 9 H 0.136 0.864 10 N -0.366 5.366 11 C 0.352 3.648 12 O -0.386 6.386 13 C -0.169 4.169 14 C 0.135 3.865 15 O -0.287 6.287 16 C -0.166 4.166 17 C -0.070 4.070 18 C -0.033 4.033 19 C -0.016 4.016 20 C -0.206 4.206 21 C -0.188 4.188 22 C -0.099 4.099 23 C -0.144 4.144 24 O -0.327 6.327 25 Si 0.593 3.407 26 O -0.064 6.064 27 C -0.073 4.073 28 C -0.153 4.153 29 H 0.147 0.853 30 H 0.148 0.852 31 H 0.148 0.852 32 H 0.136 0.864 33 H 0.110 0.890 34 H 0.236 0.764 35 H 0.259 0.741 36 H 0.164 0.836 37 H 0.158 0.842 38 H 0.172 0.828 39 H 0.172 0.828 40 H 0.155 0.845 41 H 0.229 0.771 42 H -0.171 1.171 43 H -0.178 1.178 44 H 0.152 0.848 45 H 0.113 0.887 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.723 -0.523 2.138 5.211 hybrid contribution -0.415 0.357 1.738 1.822 sum -5.138 -0.166 3.876 6.438 Atomic orbital electron populations 1.30235 1.26505 1.11716 1.11939 1.07797 0.78547 0.75617 0.77431 1.93618 1.79136 1.34279 1.86418 1.93620 1.79180 1.67105 1.53084 1.31824 1.07353 1.09189 1.23738 0.83068 1.23259 1.00878 0.89436 1.02894 1.21689 0.97484 0.98364 0.79710 0.86438 1.45570 1.67425 1.15296 1.08288 1.17977 0.77860 0.83512 0.85479 1.90853 1.43144 1.29718 1.74836 1.20233 1.07025 0.95769 0.93884 1.18598 0.90712 0.86738 0.90477 1.84757 1.35626 1.28096 1.80206 1.21415 1.00981 0.99516 0.94703 1.21142 0.95172 0.90541 1.00126 1.17569 1.02574 0.90108 0.93082 1.20263 1.04884 0.85655 0.90778 1.21872 1.04915 0.97877 0.95925 1.21582 1.04583 0.94446 0.98163 1.22850 1.04866 0.92891 0.89300 1.24352 0.97427 0.81285 1.11332 1.86675 1.21648 1.56101 1.68232 0.94731 0.86203 0.84981 0.74737 1.83915 1.64573 1.19570 1.38344 1.21282 0.95225 0.96570 0.94269 1.23016 0.90814 0.98315 1.03179 0.85270 0.85160 0.85175 0.86440 0.89034 0.76400 0.74060 0.83556 0.84156 0.82765 0.82766 0.84507 0.77088 1.17131 1.17751 0.84759 0.88663 0.87130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 3.11 10.62 101.05 1.07 4.19 16 2 S 2.42 -4.59 5.34 -107.50 -0.57 -5.16 16 3 O -0.94 -2.20 18.10 -57.83 -1.05 -3.25 16 4 O -0.93 -1.71 17.19 -57.83 -0.99 -2.71 16 5 C -0.61 2.56 4.04 -25.92 -0.10 2.45 16 6 H 0.15 -1.07 8.14 -51.93 -0.42 -1.50 16 7 C -0.13 0.42 7.42 -25.92 -0.19 0.23 16 8 C 0.13 -0.24 4.33 -67.09 -0.29 -0.53 16 9 H 0.12 -0.03 7.46 -51.93 -0.39 -0.41 16 10 N -0.71 1.27 5.21 -54.03 -0.28 0.99 16 11 C 0.56 0.63 7.76 -12.46 -0.10 0.54 16 12 O -0.51 -2.31 14.74 -16.66 -0.25 -2.56 16 13 C -0.17 -0.01 5.88 -104.90 -0.62 -0.62 16 14 C 0.18 0.04 6.72 -38.63 -0.26 -0.22 16 15 O -0.48 -0.50 11.55 -40.60 -0.47 -0.96 16 16 C -0.15 0.25 9.96 -39.54 -0.39 -0.15 16 17 C -0.05 0.11 9.54 -39.16 -0.37 -0.26 16 18 C -0.03 0.04 5.87 -105.03 -0.62 -0.58 16 19 C 0.03 -0.01 7.03 -36.49 -0.26 -0.27 16 20 C -0.19 0.15 10.26 -39.37 -0.40 -0.25 16 21 C -0.17 0.07 10.78 -39.80 -0.43 -0.36 16 22 C -0.05 0.03 6.20 -35.56 -0.22 -0.19 16 23 C -0.03 0.06 2.98 36.01 0.11 0.17 16 24 O -0.52 0.16 12.88 -35.23 -0.45 -0.29 16 25 Si 0.69 -1.58 32.11 -169.99 -5.46 -7.04 16 26 O -0.17 0.06 8.80 4.59 0.04 0.10 16 27 C -0.05 0.08 9.20 -38.77 -0.36 -0.28 16 28 C -0.11 0.33 7.42 -25.90 -0.19 0.13 16 29 H 0.13 -0.86 8.14 -51.93 -0.42 -1.28 16 30 H 0.13 -0.59 8.14 -51.92 -0.42 -1.01 16 31 H 0.13 -0.82 8.14 -51.92 -0.42 -1.24 16 32 H 0.12 -0.37 7.36 -51.93 -0.38 -0.75 16 33 H 0.09 -0.39 8.14 -51.93 -0.42 -0.81 16 34 H 0.40 -1.67 6.73 -40.82 -0.27 -1.95 16 35 H 0.40 -1.11 9.06 45.56 0.41 -0.69 16 36 H 0.15 -0.49 8.06 -52.48 -0.42 -0.91 16 37 H 0.14 -0.59 6.96 -52.48 -0.37 -0.96 16 38 H 0.15 -0.44 7.24 -52.49 -0.38 -0.82 16 39 H 0.15 -0.21 8.06 -52.49 -0.42 -0.64 16 40 H 0.14 -0.43 7.96 -51.93 -0.41 -0.84 16 41 H 0.38 -1.12 8.70 45.56 0.40 -0.72 16 42 H -0.25 -0.14 7.11 56.52 0.40 0.26 16 43 H -0.25 0.00 7.11 56.52 0.40 0.40 16 44 H 0.13 -0.46 6.24 -52.49 -0.33 -0.79 16 45 H 0.09 -0.34 8.14 -51.93 -0.42 -0.76 16 46 H 0.11 -0.32 8.10 -51.93 -0.42 -0.74 16 LS Contribution 406.92 15.07 6.13 6.13 Total: 0.00 -15.25 406.92 -11.69 -26.94 By element: Atomic # 1 Polarization: -11.45 SS G_CDS: -4.72 Total: -16.17 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: -3.62 Total: 3.99 kcal Atomic # 7 Polarization: 1.27 SS G_CDS: -0.28 Total: 0.99 kcal Atomic # 8 Polarization: -6.51 SS G_CDS: -3.17 Total: -9.68 kcal Atomic # 14 Polarization: -1.58 SS G_CDS: -5.46 Total: -7.04 kcal Atomic # 16 Polarization: -4.59 SS G_CDS: -0.57 Total: -5.16 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -15.25 -11.69 -26.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12912156_13259648.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.419 kcal (2) G-P(sol) polarization free energy of solvation -15.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.52 seconds