Wall clock time and date at job start Tue Mar 9 2021 13:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42103 * 108.57817 * 2 1 4 4 O 1.42095 * 108.57926 * 228.97257 * 2 1 3 5 5 C 1.81401 * 101.92284 * 114.48256 * 2 1 3 6 6 H 1.08997 * 112.90910 * 311.25568 * 5 2 1 7 7 C 1.53782 * 113.60864 * 82.50576 * 5 2 1 8 8 C 1.53785 * 87.08021 * 139.98309 * 7 5 2 9 9 H 1.08995 * 113.69036 * 220.00670 * 8 7 5 10 10 N 1.46497 * 113.61502 * 89.11302 * 8 7 5 11 11 C 1.34778 * 120.00279 * 107.50408 * 10 8 7 12 12 O 1.21586 * 119.99469 * 0.02562 * 11 10 8 13 13 C 1.47555 * 120.00387 * 179.97438 * 11 10 8 14 14 C 1.40210 * 120.12537 * 180.25490 * 13 11 10 15 15 O 1.35649 * 120.00301 * 0.02562 * 14 13 11 16 16 C 1.38821 * 119.99693 * 180.27864 * 14 13 11 17 17 C 1.37765 * 120.24532 * 359.74522 * 16 14 13 18 18 C 1.39840 * 120.24410 * 359.97438 * 17 16 14 19 19 C 1.47819 * 120.00109 * 180.02562 * 18 17 16 20 20 C 1.35937 * 125.92744 * 359.69045 * 19 18 17 21 21 C 1.40971 * 106.74229 * 179.88989 * 20 19 18 22 22 C 1.34710 * 107.02350 * 0.37682 * 21 20 19 23 23 C 1.50702 * 125.66147 * 179.74432 * 22 21 20 24 24 O 1.42908 * 109.47068 * 65.00126 * 23 22 21 25 25 Si 1.86299 * 109.47431 * 185.00089 * 23 22 21 26 26 O 1.34336 * 108.67609 * 359.76946 * 22 21 20 27 27 C 1.39180 * 120.00251 * 359.97438 * 18 17 16 28 28 C 1.53780 * 113.61316 * 180.02562 * 5 2 1 29 29 H 1.08995 * 109.47076 * 305.51502 * 1 2 3 30 30 H 1.09007 * 109.47093 * 65.51578 * 1 2 3 31 31 H 1.09002 * 109.47097 * 185.51686 * 1 2 3 32 32 H 1.08996 * 113.61998 * 25.43181 * 7 5 2 33 33 H 1.09007 * 113.60972 * 254.52604 * 7 5 2 34 34 H 0.96997 * 120.00024 * 287.50322 * 10 8 7 35 35 H 0.96699 * 114.00237 * 270.25716 * 15 14 13 36 36 H 1.08006 * 119.87762 * 179.71840 * 16 14 13 37 37 H 1.08005 * 119.87608 * 180.02562 * 17 16 14 38 38 H 1.07997 * 126.62874 * 0.02562 * 20 19 18 39 39 H 1.07994 * 126.48686 * 180.13811 * 21 20 19 40 40 H 1.08997 * 109.47239 * 305.00387 * 23 22 21 41 41 H 0.96696 * 113.99718 * 59.99497 * 24 23 22 42 42 H 1.48495 * 110.00500 * 180.02562 * 25 23 22 43 43 H 1.48509 * 109.99771 * 301.32027 * 25 23 22 44 44 H 1.08002 * 120.12014 * 180.02562 * 27 18 17 45 45 H 1.08994 * 113.61385 * 105.47509 * 28 5 2 46 46 H 1.08994 * 113.69512 * 334.57903 * 28 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0161 5 6 2.1887 -0.7355 1.6153 6 1 1.6286 -0.2773 2.4304 7 6 2.1362 -2.2725 1.6193 8 6 3.3796 -2.2343 2.5233 9 1 4.1166 -3.0017 2.2870 10 7 3.0644 -2.1691 3.9525 11 6 3.2598 -3.2484 4.7357 12 8 3.6983 -4.2761 4.2560 13 6 2.9428 -3.1826 6.1753 14 6 3.1502 -4.3023 6.9934 15 8 3.6436 -5.4486 6.4619 16 6 2.8456 -4.2392 8.3463 17 6 2.3443 -3.0775 8.8913 18 6 2.1390 -1.9530 8.0859 19 6 1.6013 -0.7091 8.6765 20 6 1.2612 -0.5271 9.9799 21 6 0.8004 0.8000 10.0979 22 6 0.8736 1.3533 8.8719 23 6 0.4773 2.7640 8.5196 24 8 1.3427 3.6832 9.1893 25 14 0.6187 3.0072 6.6780 26 8 1.3579 0.4387 8.0154 27 6 2.4419 -2.0045 6.7285 28 6 3.6946 -0.8641 1.8991 29 1 -0.3633 0.5970 0.8364 30 1 -0.3634 0.4259 -0.9353 31 1 -0.3633 -1.0229 0.0988 32 1 2.3204 -2.7183 0.6419 33 1 1.2515 -2.6777 2.1106 34 1 2.7150 -1.3491 4.3352 35 1 2.9647 -6.0549 6.1355 36 1 3.0018 -5.1043 8.9738 37 1 2.1097 -3.0350 9.9447 38 1 1.3324 -1.2573 10.7725 39 1 0.4509 1.2806 10.9996 40 1 -0.5520 2.9409 8.8315 41 1 2.2765 3.5831 8.9592 42 1 0.2312 4.3947 6.3176 43 1 2.0105 2.7379 6.2355 44 1 2.2844 -1.1369 6.1047 45 1 4.0678 -0.1329 2.6161 46 1 4.3064 -0.9246 0.9991 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12912156_13259648.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:27:45 Heat of formation + Delta-G solvation = -95.605257 kcal Electronic energy + Delta-G solvation = -34424.214074 eV Core-core repulsion = 29569.394805 eV Total energy + Delta-G solvation = -4854.819269 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 394.106 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -43.68881 -41.75498 -40.47458 -38.96134 -38.19634 -37.99387 -37.81533 -37.04516 -34.68571 -34.11207 -32.74583 -32.21637 -30.37732 -30.04243 -27.06317 -26.91914 -26.38353 -25.14290 -23.57566 -22.97993 -21.98587 -21.26851 -21.03818 -19.69289 -19.62932 -19.19207 -18.55342 -18.04797 -17.57069 -17.46836 -17.19152 -17.12356 -16.87535 -16.65685 -16.43820 -16.28263 -15.92850 -15.78570 -15.60712 -15.19250 -14.55235 -14.48261 -14.34887 -14.23772 -14.00238 -13.95207 -13.88291 -13.82499 -13.77110 -13.62877 -13.48403 -13.22148 -13.14065 -13.11446 -13.02397 -12.87140 -12.12709 -12.10374 -12.03385 -11.86214 -11.79616 -11.09696 -11.05857 -10.93232 -10.78270 -10.48291 -10.33681 -10.11874 -8.90066 -4.97361 -0.92244 -0.55831 -0.21111 0.77697 1.17135 1.47979 1.49459 1.72121 1.80920 1.85709 1.93241 1.95159 2.58813 2.63258 2.86809 3.11351 3.18945 3.22185 3.30583 3.41837 3.47433 3.58449 3.66465 3.87558 3.91262 4.02673 4.06312 4.12266 4.21309 4.26855 4.35325 4.45327 4.48360 4.52397 4.60392 4.64164 4.69473 4.71292 4.80845 4.85587 4.89296 4.93750 5.00971 5.02758 5.15154 5.21486 5.41077 5.45101 5.51137 5.98854 6.34796 6.37956 6.73765 7.08801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.640 4.640 2 S 2.419 3.581 3 O -0.988 6.988 4 O -0.982 6.982 5 C -0.588 4.588 6 H 0.190 0.810 7 C -0.122 4.122 8 C 0.125 3.875 9 H 0.095 0.905 10 N -0.698 5.698 11 C 0.561 3.439 12 O -0.554 6.554 13 C -0.179 4.179 14 C 0.165 3.835 15 O -0.496 6.496 16 C -0.148 4.148 17 C -0.045 4.045 18 C -0.041 4.041 19 C 0.025 3.975 20 C -0.191 4.191 21 C -0.182 4.182 22 C -0.052 4.052 23 C -0.041 4.041 24 O -0.538 6.538 25 Si 0.774 3.226 26 O -0.171 6.171 27 C -0.050 4.050 28 C -0.123 4.123 29 H 0.157 0.843 30 H 0.130 0.870 31 H 0.152 0.848 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.414 0.586 35 H 0.411 0.589 36 H 0.162 0.838 37 H 0.164 0.836 38 H 0.173 0.827 39 H 0.160 0.840 40 H 0.152 0.848 41 H 0.390 0.610 42 H -0.288 1.288 43 H -0.283 1.283 44 H 0.152 0.848 45 H 0.105 0.895 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.911 -0.693 5.372 9.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.792 4.792 2 S 2.607 3.393 3 O -0.985 6.985 4 O -0.979 6.979 5 C -0.699 4.699 6 H 0.208 0.792 7 C -0.161 4.161 8 C 0.018 3.982 9 H 0.113 0.887 10 N -0.351 5.351 11 C 0.350 3.650 12 O -0.433 6.433 13 C -0.182 4.182 14 C 0.118 3.882 15 O -0.309 6.309 16 C -0.166 4.166 17 C -0.063 4.063 18 C -0.041 4.041 19 C -0.025 4.025 20 C -0.209 4.209 21 C -0.201 4.201 22 C -0.102 4.102 23 C -0.150 4.150 24 O -0.346 6.346 25 Si 0.677 3.323 26 O -0.069 6.069 27 C -0.069 4.069 28 C -0.162 4.162 29 H 0.175 0.825 30 H 0.148 0.852 31 H 0.170 0.830 32 H 0.130 0.870 33 H 0.127 0.873 34 H 0.252 0.748 35 H 0.272 0.728 36 H 0.180 0.820 37 H 0.181 0.819 38 H 0.190 0.810 39 H 0.178 0.822 40 H 0.169 0.831 41 H 0.239 0.761 42 H -0.215 1.215 43 H -0.209 1.209 44 H 0.170 0.830 45 H 0.124 0.876 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.586 -0.180 3.770 7.591 hybrid contribution 0.152 0.277 1.290 1.328 sum -6.434 0.097 5.059 8.186 Atomic orbital electron populations 1.30091 1.21989 1.13863 1.13276 1.07548 0.80071 0.74039 0.77627 1.93554 1.81110 1.36568 1.87304 1.93556 1.81077 1.67631 1.55624 1.31713 1.06753 1.08447 1.22966 0.79223 1.23250 1.00629 0.89968 1.02286 1.21701 0.98120 0.98384 0.79968 0.88723 1.45444 1.66412 1.15154 1.08069 1.18228 0.77264 0.83421 0.86107 1.90827 1.45424 1.31415 1.75639 1.20206 1.08253 0.96478 0.93288 1.18894 0.91302 0.86592 0.91377 1.84713 1.36906 1.28785 1.80530 1.21571 1.00634 1.00344 0.94026 1.21416 0.93909 0.89799 1.01149 1.17682 1.02860 0.90277 0.93296 1.20412 1.05243 0.85757 0.91061 1.22152 1.04386 0.98114 0.96295 1.21796 1.04919 0.94887 0.98532 1.23013 1.04723 0.93106 0.89378 1.24593 0.97972 0.80650 1.11771 1.86647 1.22594 1.56575 1.68782 0.93822 0.83492 0.81952 0.73034 1.83895 1.64689 1.19731 1.38554 1.21422 0.94378 0.96503 0.94555 1.23091 0.91989 0.97918 1.03165 0.82480 0.85178 0.82963 0.87045 0.87316 0.74794 0.72801 0.82021 0.81882 0.80970 0.82229 0.83065 0.76060 1.21530 1.20948 0.83004 0.87638 0.87773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 7.30 10.62 113.37 1.20 8.50 16 2 S 2.42 -8.17 5.34 -56.49 -0.30 -8.47 16 3 O -0.99 -5.81 18.10 -127.37 -2.31 -8.11 16 4 O -0.98 -5.32 17.19 -127.37 -2.19 -7.51 16 5 C -0.59 5.42 4.04 31.12 0.13 5.54 16 6 H 0.19 -3.27 8.14 -2.39 -0.02 -3.29 16 7 C -0.12 0.85 7.42 31.12 0.23 1.08 16 8 C 0.13 -0.37 4.33 45.54 0.20 -0.17 16 9 H 0.09 0.19 7.46 -2.39 -0.02 0.17 16 10 N -0.70 2.57 5.21 -443.11 -2.31 0.26 16 11 C 0.56 1.70 7.76 86.70 0.67 2.37 16 12 O -0.55 -6.08 14.74 17.00 0.25 -5.83 16 13 C -0.18 -0.04 5.88 -20.04 -0.12 -0.16 16 14 C 0.16 0.13 6.72 22.89 0.15 0.29 16 15 O -0.50 -1.67 11.55 -68.65 -0.79 -2.46 16 16 C -0.15 0.59 9.96 22.30 0.22 0.81 16 17 C -0.04 0.25 9.54 22.55 0.22 0.47 16 18 C -0.04 0.14 5.87 -20.13 -0.12 0.02 16 19 C 0.02 -0.06 7.03 24.27 0.17 0.12 16 20 C -0.19 0.61 10.26 22.40 0.23 0.83 16 21 C -0.18 0.36 10.78 22.13 0.24 0.60 16 22 C -0.05 0.12 6.20 24.88 0.15 0.28 16 23 C -0.04 0.18 2.98 71.24 0.21 0.39 16 24 O -0.54 0.61 12.88 -148.98 -1.92 -1.31 16 25 Si 0.77 -4.07 32.11 68.60 2.20 -1.87 16 26 O -0.17 0.34 8.80 -6.50 -0.06 0.28 16 27 C -0.05 0.18 9.20 22.79 0.21 0.39 16 28 C -0.12 0.64 7.42 31.14 0.23 0.87 16 29 H 0.16 -2.61 8.14 -2.39 -0.02 -2.63 16 30 H 0.13 -1.34 8.14 -2.39 -0.02 -1.36 16 31 H 0.15 -2.34 8.14 -2.39 -0.02 -2.36 16 32 H 0.11 -0.59 7.36 -2.39 -0.02 -0.61 16 33 H 0.11 -1.10 8.14 -2.38 -0.02 -1.12 16 34 H 0.41 -3.98 6.73 -92.71 -0.62 -4.60 16 35 H 0.41 -1.61 9.06 -74.06 -0.67 -2.29 16 36 H 0.16 -1.24 8.06 -2.91 -0.02 -1.26 16 37 H 0.16 -1.76 6.96 -2.91 -0.02 -1.78 16 38 H 0.17 -1.35 7.24 -2.91 -0.02 -1.37 16 39 H 0.16 -0.59 8.06 -2.91 -0.02 -0.61 16 40 H 0.15 -1.15 7.96 -2.39 -0.02 -1.17 16 41 H 0.39 -2.39 8.70 -74.06 -0.64 -3.03 16 42 H -0.29 -0.44 7.11 99.48 0.71 0.27 16 43 H -0.28 0.11 7.11 99.48 0.71 0.81 16 44 H 0.15 -1.27 6.24 -2.91 -0.02 -1.29 16 45 H 0.11 -0.77 8.14 -2.39 -0.02 -0.79 16 46 H 0.10 -0.41 8.10 -2.39 -0.02 -0.42 16 Total: 0.00 -37.49 406.92 -4.01 -41.50 By element: Atomic # 1 Polarization: -27.90 SS G_CDS: -0.82 Total: -28.72 kcal Atomic # 6 Polarization: 18.01 SS G_CDS: 4.23 Total: 22.24 kcal Atomic # 7 Polarization: 2.57 SS G_CDS: -2.31 Total: 0.26 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -7.01 Total: -24.95 kcal Atomic # 14 Polarization: -4.07 SS G_CDS: 2.20 Total: -1.87 kcal Atomic # 16 Polarization: -8.17 SS G_CDS: -0.30 Total: -8.47 kcal Total: -37.49 -4.01 -41.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12912156_13259648.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.103 kcal (2) G-P(sol) polarization free energy of solvation -37.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds