Wall clock time and date at job start Tue Mar 9 2021 13:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42107 * 108.57811 * 2 1 4 4 O 1.42101 * 108.57883 * 131.02348 * 2 1 3 5 5 C 1.81397 * 101.92362 * 245.51419 * 2 1 3 6 6 H 1.09006 * 112.84931 * 311.19600 * 5 2 1 7 7 C 1.53775 * 113.61678 * 82.50039 * 5 2 1 8 8 C 1.53777 * 87.08448 * 139.98382 * 7 5 2 9 9 H 1.09000 * 113.69572 * 220.00830 * 8 7 5 10 10 N 1.46507 * 113.61325 * 89.11402 * 8 7 5 11 11 C 1.34774 * 119.99634 * 107.50850 * 10 8 7 12 12 O 1.21595 * 120.00245 * 359.97438 * 11 10 8 13 13 C 1.47561 * 120.00116 * 179.97438 * 11 10 8 14 14 C 1.39836 * 119.99543 * 359.72140 * 13 11 10 15 15 C 1.36565 * 119.99569 * 179.73941 * 14 13 11 16 16 C 1.39822 * 119.99767 * 0.55658 * 15 14 13 17 17 C 1.47564 * 119.99590 * 179.71365 * 16 15 14 18 18 C 1.34980 * 125.28069 * 359.97438 * 17 16 15 19 19 C 1.37790 * 114.70509 * 179.97438 * 18 17 16 20 20 C 1.33746 * 115.08211 * 359.97438 * 19 18 17 21 21 C 1.50700 * 125.12095 * 179.97438 * 20 19 18 22 22 O 1.42900 * 109.47145 * 300.00900 * 21 20 19 23 23 Si 1.86299 * 109.47154 * 180.02562 * 21 20 19 24 24 S 1.75859 * 109.76147 * 359.77785 * 20 19 18 25 25 C 1.39821 * 120.00438 * 359.70005 * 16 15 14 26 26 C 1.36558 * 120.00300 * 0.02562 * 25 16 15 27 27 C 1.53783 * 113.61646 * 180.02562 * 5 2 1 28 28 H 1.09001 * 109.46593 * 174.48790 * 1 2 3 29 29 H 1.09001 * 109.47186 * 294.48374 * 1 2 3 30 30 H 1.09000 * 109.47070 * 54.48793 * 1 2 3 31 31 H 1.09007 * 113.61820 * 254.53180 * 7 5 2 32 32 H 1.09000 * 113.61472 * 25.43403 * 7 5 2 33 33 H 0.96997 * 120.00231 * 287.49979 * 10 8 7 34 34 H 1.08001 * 120.00502 * 0.02600 * 14 13 11 35 35 H 1.07995 * 120.00070 * 180.28195 * 15 14 13 36 36 H 1.08006 * 122.64535 * 359.93202 * 18 17 16 37 37 H 1.08001 * 122.45906 * 179.97438 * 19 18 17 38 38 H 1.09000 * 109.46829 * 60.00531 * 21 20 19 39 39 H 0.96707 * 113.99861 * 299.99463 * 22 21 20 40 40 H 1.48501 * 109.99727 * 180.02562 * 23 21 20 41 41 H 1.48497 * 109.99726 * 301.31821 * 23 21 20 42 42 H 1.08007 * 119.99649 * 179.97438 * 25 16 15 43 43 H 1.07994 * 120.00465 * 180.02562 * 26 25 16 44 44 H 1.08996 * 113.60953 * 334.56281 * 27 5 2 45 45 H 1.08996 * 113.61325 * 105.38779 * 27 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 1.0162 5 6 2.1888 -0.7356 -1.6152 6 1 1.6289 -1.6518 -1.8032 7 6 2.1361 0.2701 -2.7773 8 6 3.3796 -0.4368 -3.3419 9 1 4.1166 0.2452 -3.7659 10 7 3.0643 -1.5579 -4.2309 11 6 3.2598 -1.4401 -5.5592 12 8 3.6974 -0.4034 -6.0198 13 6 2.9428 -2.5694 -6.4546 14 6 2.4451 -3.7637 -5.9242 15 6 2.1468 -4.8070 -6.7534 16 6 2.3499 -4.6849 -8.1314 17 6 2.0335 -5.8144 -9.0267 18 6 1.5454 -7.0093 -8.6317 19 6 1.3281 -7.9086 -9.6528 20 6 1.6323 -7.4619 -10.8761 21 6 1.4841 -8.2535 -12.1499 22 8 2.2913 -9.4303 -12.0760 23 14 2.0337 -7.2137 -13.5947 24 16 2.2260 -5.8096 -10.7751 25 6 2.8526 -3.4926 -8.6611 26 6 3.1458 -2.4473 -7.8327 27 6 3.6947 -0.8654 -1.8986 28 1 -0.3632 -1.0230 -0.0987 29 1 -0.3633 0.4259 0.9353 30 1 -0.3633 0.5969 -0.8365 31 1 1.2515 0.1656 -3.4056 32 1 2.3204 1.3001 -2.4720 33 1 2.7150 -2.3849 -3.8635 34 1 2.2923 -3.8595 -4.8594 35 1 1.7581 -5.7278 -6.3444 36 1 1.3421 -7.2423 -7.5969 37 1 0.9405 -8.9014 -9.4780 38 1 0.4399 -8.5368 -12.2821 39 1 3.2347 -9.2534 -11.9582 40 1 1.8918 -7.9829 -14.8571 41 1 1.2232 -5.9713 -13.6637 42 1 3.0099 -3.3985 -9.7256 43 1 3.5337 -1.5262 -8.2418 44 1 4.3051 -0.1459 -1.3530 45 1 4.0681 -1.8860 -1.8162 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12912156_13308390.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:28:33 Heat of formation + Delta-G solvation = -36.183792 kcal Electronic energy + Delta-G solvation = -30157.450256 eV Core-core repulsion = 25747.960566 eV Total energy + Delta-G solvation = -4409.489690 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 394.079 amu Computer time = 4.52 seconds Orbital eigenvalues (eV) -41.71681 -40.51986 -39.47925 -38.87126 -38.02684 -37.45103 -37.08011 -34.76468 -33.42446 -32.33881 -30.75368 -30.55577 -27.75509 -27.15953 -26.66227 -24.79220 -24.07821 -23.51887 -22.02080 -21.21040 -20.35198 -19.84205 -19.38176 -18.83911 -18.14639 -17.73219 -17.29734 -17.24026 -17.01411 -16.71232 -16.37529 -16.31974 -16.17371 -16.07529 -15.62912 -15.46337 -15.01616 -14.65471 -14.57993 -14.54299 -14.34026 -14.31509 -14.13732 -13.99489 -13.94158 -13.85649 -13.69627 -13.35969 -13.19727 -13.14215 -13.03371 -12.64879 -12.32643 -12.28983 -12.21557 -12.17086 -12.02540 -11.65900 -11.26809 -11.09518 -10.88558 -10.60827 -10.31758 -10.31012 -9.63744 -9.12828 -5.23614 -1.12264 -0.98356 0.15784 0.22388 0.29668 0.67130 1.13934 1.45133 1.52887 1.58141 1.82013 1.84941 1.89178 2.38685 2.64419 2.72753 2.96189 3.17912 3.26160 3.30433 3.38189 3.50539 3.54175 3.57678 3.63327 3.69365 3.71160 3.86918 4.04751 4.17272 4.22859 4.25864 4.28383 4.35242 4.36941 4.42817 4.49736 4.51989 4.55427 4.59912 4.71910 4.77289 4.88755 4.99304 5.10835 5.17434 5.19346 5.28545 5.36482 5.60781 6.26524 6.38317 7.02991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 2.424 3.576 3 O -0.933 6.933 4 O -0.937 6.937 5 C -0.612 4.612 6 H 0.150 0.850 7 C -0.126 4.126 8 C 0.133 3.867 9 H 0.118 0.882 10 N -0.711 5.711 11 C 0.564 3.436 12 O -0.527 6.527 13 C -0.138 4.138 14 C -0.078 4.078 15 C -0.110 4.110 16 C 0.016 3.984 17 C -0.150 4.150 18 C -0.118 4.118 19 C -0.104 4.104 20 C -0.218 4.218 21 C -0.026 4.026 22 O -0.534 6.534 23 Si 0.652 3.348 24 S 0.134 5.866 25 C -0.120 4.120 26 C -0.047 4.047 27 C -0.113 4.113 28 H 0.128 0.872 29 H 0.130 0.870 30 H 0.129 0.871 31 H 0.091 0.909 32 H 0.118 0.882 33 H 0.401 0.599 34 H 0.129 0.871 35 H 0.134 0.866 36 H 0.145 0.855 37 H 0.146 0.854 38 H 0.124 0.876 39 H 0.381 0.619 40 H -0.232 1.232 41 H -0.237 1.237 42 H 0.132 0.868 43 H 0.143 0.857 44 H 0.110 0.890 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.754 -3.387 -0.971 3.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.804 4.804 2 S 2.606 3.394 3 O -0.930 6.930 4 O -0.934 6.934 5 C -0.720 4.720 6 H 0.168 0.832 7 C -0.166 4.166 8 C 0.026 3.974 9 H 0.136 0.864 10 N -0.363 5.363 11 C 0.352 3.648 12 O -0.404 6.404 13 C -0.142 4.142 14 C -0.097 4.097 15 C -0.130 4.130 16 C 0.013 3.987 17 C -0.267 4.267 18 C -0.149 4.149 19 C -0.134 4.134 20 C -0.336 4.336 21 C -0.140 4.140 22 O -0.339 6.339 23 Si 0.551 3.449 24 S 0.401 5.599 25 C -0.139 4.139 26 C -0.066 4.066 27 C -0.152 4.152 28 H 0.146 0.854 29 H 0.149 0.851 30 H 0.148 0.852 31 H 0.109 0.891 32 H 0.136 0.864 33 H 0.237 0.763 34 H 0.147 0.853 35 H 0.152 0.848 36 H 0.162 0.838 37 H 0.164 0.836 38 H 0.141 0.859 39 H 0.229 0.771 40 H -0.155 1.155 41 H -0.161 1.161 42 H 0.149 0.851 43 H 0.160 0.840 44 H 0.129 0.871 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.171 -1.204 -2.600 3.095 hybrid contribution -1.929 -2.129 1.189 3.109 sum -3.100 -3.333 -1.411 4.766 Atomic orbital electron populations 1.30239 1.26572 1.11610 1.12009 1.07799 0.78515 0.75922 0.77153 1.93623 1.79158 1.34017 1.86170 1.93617 1.79119 1.67050 1.53648 1.31811 1.07392 1.12033 1.20795 0.83163 1.23265 1.00927 0.98207 0.94192 1.21706 0.97484 0.89005 0.89177 0.86426 1.45552 1.67197 1.17193 1.06380 1.18221 0.77366 0.87406 0.81843 1.90828 1.44291 1.29630 1.75620 1.19957 1.05372 0.94435 0.94404 1.20946 0.96782 0.92154 0.99818 1.20871 1.00753 0.99503 0.91875 1.18306 0.96664 0.91424 0.92257 1.23080 1.09269 0.97865 0.96474 1.20390 1.01293 0.92092 1.01085 1.20004 1.01327 1.01267 0.90828 1.25107 1.09836 0.98445 1.00165 1.24418 0.98926 0.91294 0.99346 1.86530 1.22398 1.29164 1.95854 0.95002 0.90905 0.79954 0.79036 1.84168 1.63197 1.10819 1.01712 1.20989 1.00128 0.92401 1.00359 1.20950 0.94954 0.99046 0.91624 1.23017 0.90755 1.04970 0.96484 0.85362 0.85124 0.85189 0.89060 0.86414 0.76276 0.85300 0.84780 0.83757 0.83627 0.85876 0.77097 1.15500 1.16132 0.85066 0.83970 0.87135 0.88559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 2.95 10.62 101.05 1.07 4.02 16 2 S 2.42 -4.46 5.34 -107.50 -0.57 -5.04 16 3 O -0.93 -1.78 17.19 -57.83 -0.99 -2.78 16 4 O -0.94 -2.18 18.10 -57.83 -1.05 -3.22 16 5 C -0.61 2.59 4.04 -25.92 -0.10 2.49 16 6 H 0.15 -1.07 8.14 -51.93 -0.42 -1.49 16 7 C -0.13 0.40 7.42 -25.92 -0.19 0.21 16 8 C 0.13 -0.26 4.33 -67.09 -0.29 -0.55 16 9 H 0.12 -0.05 7.46 -51.93 -0.39 -0.44 16 10 N -0.71 1.53 5.21 -54.02 -0.28 1.25 16 11 C 0.56 0.53 7.76 -12.46 -0.10 0.43 16 12 O -0.53 -2.50 15.93 5.28 0.08 -2.41 16 13 C -0.14 0.03 5.88 -104.90 -0.62 -0.59 16 14 C -0.08 0.19 9.48 -39.59 -0.38 -0.19 16 15 C -0.11 0.21 9.48 -39.59 -0.38 -0.16 16 16 C 0.02 -0.01 5.88 -104.91 -0.62 -0.62 16 17 C -0.15 0.05 6.37 -36.94 -0.24 -0.18 16 18 C -0.12 0.12 9.64 -40.90 -0.39 -0.28 16 19 C -0.10 0.06 10.00 -41.32 -0.41 -0.35 16 20 C -0.22 0.14 5.73 -35.88 -0.21 -0.07 16 21 C -0.03 0.03 2.96 36.01 0.11 0.13 16 22 O -0.53 0.34 12.86 -35.23 -0.45 -0.12 16 23 Si 0.65 -0.90 30.96 -169.99 -5.26 -6.16 16 24 S 0.13 -0.10 19.46 -107.50 -2.09 -2.19 16 25 C -0.12 0.04 9.54 -39.60 -0.38 -0.34 16 26 C -0.05 -0.01 9.53 -39.59 -0.38 -0.39 16 27 C -0.11 0.36 7.42 -25.89 -0.19 0.17 16 28 H 0.13 -0.80 8.14 -51.92 -0.42 -1.23 16 29 H 0.13 -0.56 8.14 -51.92 -0.42 -0.98 16 30 H 0.13 -0.77 8.14 -51.92 -0.42 -1.20 16 31 H 0.09 -0.35 8.14 -51.93 -0.42 -0.77 16 32 H 0.12 -0.35 7.36 -51.93 -0.38 -0.73 16 33 H 0.40 -1.99 6.71 -40.82 -0.27 -2.26 16 34 H 0.13 -0.70 6.38 -52.49 -0.34 -1.04 16 35 H 0.13 -0.52 6.74 -52.49 -0.35 -0.88 16 36 H 0.14 -0.42 6.88 -52.48 -0.36 -0.78 16 37 H 0.15 -0.20 8.06 -52.49 -0.42 -0.62 16 38 H 0.12 -0.11 7.96 -51.93 -0.41 -0.53 16 39 H 0.38 -1.65 8.70 45.56 0.40 -1.25 16 40 H -0.23 -0.30 7.11 56.52 0.40 0.11 16 41 H -0.24 -0.18 7.11 56.52 0.40 0.22 16 42 H 0.13 -0.19 7.26 -52.48 -0.38 -0.57 16 43 H 0.14 0.05 7.64 -52.49 -0.40 -0.35 16 44 H 0.11 -0.36 8.10 -51.93 -0.42 -0.78 16 45 H 0.10 -0.41 8.14 -51.93 -0.42 -0.83 16 LS Contribution 403.44 15.07 6.08 6.08 Total: 0.00 -13.56 403.44 -13.69 -27.25 By element: Atomic # 1 Polarization: -10.92 SS G_CDS: -5.47 Total: -16.39 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: -3.68 Total: 3.73 kcal Atomic # 7 Polarization: 1.53 SS G_CDS: -0.28 Total: 1.25 kcal Atomic # 8 Polarization: -6.12 SS G_CDS: -2.41 Total: -8.53 kcal Atomic # 14 Polarization: -0.90 SS G_CDS: -5.26 Total: -6.16 kcal Atomic # 16 Polarization: -4.56 SS G_CDS: -2.67 Total: -7.23 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -13.56 -13.69 -27.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12912156_13308390.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.931 kcal (2) G-P(sol) polarization free energy of solvation -13.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.52 seconds