Wall clock time and date at job start Tue Mar 9 2021 13:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42107 * 108.57811 * 2 1 4 4 O 1.42101 * 108.57883 * 131.02348 * 2 1 3 5 5 C 1.81397 * 101.92362 * 245.51419 * 2 1 3 6 6 H 1.09006 * 112.84931 * 311.19600 * 5 2 1 7 7 C 1.53775 * 113.61678 * 82.50039 * 5 2 1 8 8 C 1.53777 * 87.08448 * 139.98382 * 7 5 2 9 9 H 1.09000 * 113.69572 * 220.00830 * 8 7 5 10 10 N 1.46507 * 113.61325 * 89.11402 * 8 7 5 11 11 C 1.34774 * 119.99634 * 107.50850 * 10 8 7 12 12 O 1.21595 * 120.00245 * 359.97438 * 11 10 8 13 13 C 1.47561 * 120.00116 * 179.97438 * 11 10 8 14 14 C 1.39836 * 119.99543 * 359.72140 * 13 11 10 15 15 C 1.36565 * 119.99569 * 179.73941 * 14 13 11 16 16 C 1.39822 * 119.99767 * 0.55658 * 15 14 13 17 17 C 1.47564 * 119.99590 * 179.71365 * 16 15 14 18 18 C 1.34980 * 125.28069 * 359.97438 * 17 16 15 19 19 C 1.37790 * 114.70509 * 179.97438 * 18 17 16 20 20 C 1.33746 * 115.08211 * 359.97438 * 19 18 17 21 21 C 1.50700 * 125.12095 * 179.97438 * 20 19 18 22 22 O 1.42900 * 109.47145 * 300.00900 * 21 20 19 23 23 Si 1.86299 * 109.47154 * 180.02562 * 21 20 19 24 24 S 1.75859 * 109.76147 * 359.77785 * 20 19 18 25 25 C 1.39821 * 120.00438 * 359.70005 * 16 15 14 26 26 C 1.36558 * 120.00300 * 0.02562 * 25 16 15 27 27 C 1.53783 * 113.61646 * 180.02562 * 5 2 1 28 28 H 1.09001 * 109.46593 * 174.48790 * 1 2 3 29 29 H 1.09001 * 109.47186 * 294.48374 * 1 2 3 30 30 H 1.09000 * 109.47070 * 54.48793 * 1 2 3 31 31 H 1.09007 * 113.61820 * 254.53180 * 7 5 2 32 32 H 1.09000 * 113.61472 * 25.43403 * 7 5 2 33 33 H 0.96997 * 120.00231 * 287.49979 * 10 8 7 34 34 H 1.08001 * 120.00502 * 0.02600 * 14 13 11 35 35 H 1.07995 * 120.00070 * 180.28195 * 15 14 13 36 36 H 1.08006 * 122.64535 * 359.93202 * 18 17 16 37 37 H 1.08001 * 122.45906 * 179.97438 * 19 18 17 38 38 H 1.09000 * 109.46829 * 60.00531 * 21 20 19 39 39 H 0.96707 * 113.99861 * 299.99463 * 22 21 20 40 40 H 1.48501 * 109.99727 * 180.02562 * 23 21 20 41 41 H 1.48497 * 109.99726 * 301.31821 * 23 21 20 42 42 H 1.08007 * 119.99649 * 179.97438 * 25 16 15 43 43 H 1.07994 * 120.00465 * 180.02562 * 26 25 16 44 44 H 1.08996 * 113.60953 * 334.56281 * 27 5 2 45 45 H 1.08996 * 113.61325 * 105.38779 * 27 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 1.0162 5 6 2.1888 -0.7356 -1.6152 6 1 1.6289 -1.6518 -1.8032 7 6 2.1361 0.2701 -2.7773 8 6 3.3796 -0.4368 -3.3419 9 1 4.1166 0.2452 -3.7659 10 7 3.0643 -1.5579 -4.2309 11 6 3.2598 -1.4401 -5.5592 12 8 3.6974 -0.4034 -6.0198 13 6 2.9428 -2.5694 -6.4546 14 6 2.4451 -3.7637 -5.9242 15 6 2.1468 -4.8070 -6.7534 16 6 2.3499 -4.6849 -8.1314 17 6 2.0335 -5.8144 -9.0267 18 6 1.5454 -7.0093 -8.6317 19 6 1.3281 -7.9086 -9.6528 20 6 1.6323 -7.4619 -10.8761 21 6 1.4841 -8.2535 -12.1499 22 8 2.2913 -9.4303 -12.0760 23 14 2.0337 -7.2137 -13.5947 24 16 2.2260 -5.8096 -10.7751 25 6 2.8526 -3.4926 -8.6611 26 6 3.1458 -2.4473 -7.8327 27 6 3.6947 -0.8654 -1.8986 28 1 -0.3632 -1.0230 -0.0987 29 1 -0.3633 0.4259 0.9353 30 1 -0.3633 0.5969 -0.8365 31 1 1.2515 0.1656 -3.4056 32 1 2.3204 1.3001 -2.4720 33 1 2.7150 -2.3849 -3.8635 34 1 2.2923 -3.8595 -4.8594 35 1 1.7581 -5.7278 -6.3444 36 1 1.3421 -7.2423 -7.5969 37 1 0.9405 -8.9014 -9.4780 38 1 0.4399 -8.5368 -12.2821 39 1 3.2347 -9.2534 -11.9582 40 1 1.8918 -7.9829 -14.8571 41 1 1.2232 -5.9713 -13.6637 42 1 3.0099 -3.3985 -9.7256 43 1 3.5337 -1.5262 -8.2418 44 1 4.3051 -0.1459 -1.3530 45 1 4.0681 -1.8860 -1.8162 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12912156_13308390.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:28:32 Heat of formation + Delta-G solvation = -40.905847 kcal Electronic energy + Delta-G solvation = -30157.655020 eV Core-core repulsion = 25747.960566 eV Total energy + Delta-G solvation = -4409.694454 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 394.079 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.64783 -40.36751 -39.38926 -38.82325 -38.00191 -37.35955 -37.05325 -34.73451 -33.31551 -32.20374 -30.51000 -30.36754 -27.64201 -26.91406 -26.50785 -24.68660 -23.95693 -23.40962 -21.93236 -21.09404 -20.24510 -19.69326 -19.25963 -18.73834 -18.01476 -17.63987 -17.15455 -17.11282 -16.90272 -16.60468 -16.26961 -16.20327 -16.10701 -16.04717 -15.54187 -15.29777 -14.92904 -14.51496 -14.46865 -14.33459 -14.21532 -14.00912 -13.90596 -13.89145 -13.79512 -13.63719 -13.60919 -13.27639 -13.14501 -13.09175 -13.03038 -12.59161 -12.29066 -12.10659 -12.06576 -12.00299 -11.80713 -11.56858 -11.21264 -11.03866 -10.81594 -10.53914 -10.22619 -10.18060 -9.55252 -9.03167 -5.16396 -0.93204 -0.89109 0.24929 0.34689 0.38596 0.76411 1.21841 1.51650 1.58074 1.81318 1.84668 1.94623 1.95362 2.59107 2.82515 2.86185 3.19532 3.39211 3.41277 3.44489 3.56669 3.67276 3.71652 3.75569 3.84813 3.89754 4.09679 4.20290 4.24358 4.31753 4.36824 4.46802 4.47508 4.53392 4.55853 4.60662 4.65546 4.72638 4.85296 4.92386 4.93243 4.98390 5.01831 5.11228 5.22595 5.29512 5.32745 5.41219 5.48730 5.73745 6.41398 6.65953 7.09126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.642 4.642 2 S 2.419 3.581 3 O -0.983 6.983 4 O -0.986 6.986 5 C -0.585 4.585 6 H 0.191 0.809 7 C -0.127 4.127 8 C 0.123 3.877 9 H 0.094 0.906 10 N -0.692 5.692 11 C 0.561 3.439 12 O -0.577 6.577 13 C -0.150 4.150 14 C -0.066 4.066 15 C -0.109 4.109 16 C 0.007 3.993 17 C -0.160 4.160 18 C -0.116 4.116 19 C -0.110 4.110 20 C -0.222 4.222 21 C -0.025 4.025 22 O -0.547 6.547 23 Si 0.716 3.284 24 S 0.121 5.879 25 C -0.129 4.129 26 C -0.063 4.063 27 C -0.119 4.119 28 H 0.155 0.845 29 H 0.129 0.871 30 H 0.150 0.850 31 H 0.105 0.895 32 H 0.110 0.890 33 H 0.418 0.582 34 H 0.166 0.834 35 H 0.161 0.839 36 H 0.168 0.832 37 H 0.153 0.847 38 H 0.123 0.877 39 H 0.397 0.603 40 H -0.270 1.270 41 H -0.268 1.268 42 H 0.133 0.867 43 H 0.129 0.871 44 H 0.103 0.897 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.307 -5.484 0.120 6.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.794 4.794 2 S 2.607 3.393 3 O -0.980 6.980 4 O -0.984 6.984 5 C -0.696 4.696 6 H 0.209 0.791 7 C -0.166 4.166 8 C 0.016 3.984 9 H 0.112 0.888 10 N -0.345 5.345 11 C 0.350 3.650 12 O -0.457 6.457 13 C -0.154 4.154 14 C -0.085 4.085 15 C -0.129 4.129 16 C 0.005 3.995 17 C -0.276 4.276 18 C -0.146 4.146 19 C -0.140 4.140 20 C -0.339 4.339 21 C -0.138 4.138 22 O -0.355 6.355 23 Si 0.620 3.380 24 S 0.388 5.612 25 C -0.148 4.148 26 C -0.082 4.082 27 C -0.158 4.158 28 H 0.173 0.827 29 H 0.148 0.852 30 H 0.168 0.832 31 H 0.123 0.877 32 H 0.128 0.872 33 H 0.257 0.743 34 H 0.183 0.817 35 H 0.178 0.822 36 H 0.185 0.815 37 H 0.171 0.829 38 H 0.140 0.860 39 H 0.247 0.753 40 H -0.195 1.195 41 H -0.194 1.194 42 H 0.150 0.850 43 H 0.147 0.853 44 H 0.122 0.878 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.689 -3.313 -1.436 4.502 hybrid contribution -1.487 -1.503 0.783 2.255 sum -4.177 -4.817 -0.653 6.409 Atomic orbital electron populations 1.30107 1.22437 1.13910 1.12974 1.07546 0.79870 0.74429 0.77418 1.93559 1.80982 1.36361 1.87083 1.93555 1.80973 1.67633 1.56202 1.31685 1.07056 1.13009 1.17808 0.79113 1.23269 1.00740 0.98124 0.94491 1.21716 0.97927 0.89163 0.89560 0.88777 1.45380 1.66026 1.17755 1.05302 1.18466 0.76721 0.87025 0.82753 1.90805 1.46798 1.31535 1.76590 1.19976 1.06404 0.95089 0.93910 1.21280 0.94928 0.90657 1.01608 1.21206 0.99982 1.00548 0.91120 1.18469 0.96729 0.91091 0.93198 1.23181 1.09903 0.98325 0.96235 1.20633 1.00393 0.91461 1.02122 1.20191 1.01240 1.01741 0.90876 1.25160 1.10024 0.98329 1.00403 1.24397 0.98927 0.91197 0.99291 1.86493 1.23784 1.29386 1.95836 0.94187 0.89902 0.77174 0.76746 1.84217 1.63448 1.11079 1.02446 1.21029 1.00649 0.92645 1.00499 1.20943 0.95891 0.98917 0.92461 1.23092 0.91686 1.05794 0.95232 0.82651 0.85203 0.83171 0.87651 0.87192 0.74259 0.81659 0.82154 0.81508 0.82897 0.86026 0.75320 1.19497 1.19367 0.84951 0.85345 0.87847 0.86910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 7.14 10.62 113.37 1.20 8.34 16 2 S 2.42 -9.03 5.34 -56.49 -0.30 -9.34 16 3 O -0.98 -5.24 17.19 -127.37 -2.19 -7.43 16 4 O -0.99 -5.14 18.10 -127.37 -2.31 -7.44 16 5 C -0.58 5.93 4.04 31.12 0.13 6.06 16 6 H 0.19 -3.52 8.14 -2.38 -0.02 -3.54 16 7 C -0.13 0.89 7.42 31.12 0.23 1.12 16 8 C 0.12 -0.48 4.33 45.53 0.20 -0.29 16 9 H 0.09 0.11 7.46 -2.39 -0.02 0.09 16 10 N -0.69 3.78 5.21 -443.09 -2.31 1.48 16 11 C 0.56 1.24 7.76 86.70 0.67 1.91 16 12 O -0.58 -6.66 15.93 -4.02 -0.06 -6.72 16 13 C -0.15 0.09 5.88 -20.05 -0.12 -0.02 16 14 C -0.07 0.48 9.48 22.27 0.21 0.69 16 15 C -0.11 0.68 9.48 22.26 0.21 0.90 16 16 C 0.01 -0.01 5.88 -20.05 -0.12 -0.13 16 17 C -0.16 0.24 6.37 23.98 0.15 0.40 16 18 C -0.12 0.43 9.64 21.41 0.21 0.64 16 19 C -0.11 0.27 10.00 21.14 0.21 0.48 16 20 C -0.22 0.37 5.73 24.66 0.14 0.51 16 21 C -0.02 0.05 2.96 71.24 0.21 0.26 16 22 O -0.55 0.96 12.86 -148.98 -1.92 -0.95 16 23 Si 0.72 -1.42 30.96 68.60 2.12 0.70 16 24 S 0.12 -0.15 19.46 -56.49 -1.10 -1.25 16 25 C -0.13 -0.01 9.54 22.26 0.21 0.20 16 26 C -0.06 -0.12 9.53 22.26 0.21 0.09 16 27 C -0.12 0.82 7.42 31.14 0.23 1.05 16 28 H 0.16 -2.52 8.14 -2.39 -0.02 -2.54 16 29 H 0.13 -1.29 8.14 -2.39 -0.02 -1.31 16 30 H 0.15 -2.21 8.14 -2.39 -0.02 -2.23 16 31 H 0.10 -1.00 8.14 -2.38 -0.02 -1.02 16 32 H 0.11 -0.56 7.36 -2.39 -0.02 -0.58 16 33 H 0.42 -5.41 6.71 -92.71 -0.62 -6.03 16 34 H 0.17 -2.52 6.38 -2.91 -0.02 -2.54 16 35 H 0.16 -1.89 6.74 -2.91 -0.02 -1.91 16 36 H 0.17 -1.49 6.88 -2.91 -0.02 -1.51 16 37 H 0.15 -0.63 8.06 -2.91 -0.02 -0.65 16 38 H 0.12 -0.22 7.96 -2.39 -0.02 -0.24 16 39 H 0.40 -3.68 8.70 -74.05 -0.64 -4.32 16 40 H -0.27 -1.09 7.11 99.48 0.71 -0.39 16 41 H -0.27 -0.77 7.11 99.48 0.71 -0.06 16 42 H 0.13 -0.17 7.26 -2.91 -0.02 -0.20 16 43 H 0.13 0.48 7.64 -2.91 -0.02 0.46 16 44 H 0.10 -0.54 8.10 -2.39 -0.02 -0.56 16 45 H 0.11 -1.14 8.14 -2.39 -0.02 -1.16 16 Total: 0.00 -34.97 403.44 -4.03 -39.01 By element: Atomic # 1 Polarization: -30.08 SS G_CDS: -0.17 Total: -30.24 kcal Atomic # 6 Polarization: 18.00 SS G_CDS: 4.20 Total: 22.20 kcal Atomic # 7 Polarization: 3.78 SS G_CDS: -2.31 Total: 1.48 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: -6.47 Total: -22.55 kcal Atomic # 14 Polarization: -1.42 SS G_CDS: 2.12 Total: 0.70 kcal Atomic # 16 Polarization: -9.19 SS G_CDS: -1.40 Total: -10.59 kcal Total: -34.97 -4.03 -39.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12912156_13308390.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.900 kcal (2) G-P(sol) polarization free energy of solvation -34.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds