Wall clock time and date at job start Tue Mar 9 2021 13:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 O 1.42103 * 108.57918 * 2 1 4 4 O 1.42100 * 108.57809 * 228.97120 * 2 1 3 5 5 C 1.81400 * 101.91994 * 114.48502 * 2 1 3 6 6 H 1.09001 * 112.84766 * 311.19390 * 5 2 1 7 7 C 1.54051 * 113.69721 * 82.46764 * 5 2 1 8 8 C 1.53785 * 86.98596 * 139.98919 * 7 5 2 9 9 H 1.08998 * 113.61497 * 219.98199 * 8 7 5 10 10 N 1.46496 * 113.61497 * 89.15846 * 8 7 5 11 11 C 1.34779 * 119.99914 * 105.86478 * 10 8 7 12 12 O 1.21284 * 119.99695 * 0.02562 * 11 10 8 13 13 C 1.50696 * 120.00395 * 180.02562 * 11 10 8 14 14 C 1.52997 * 109.47242 * 180.02562 * 13 11 10 15 15 C 1.53006 * 109.47127 * 180.02562 * 14 13 11 16 16 O 1.42895 * 109.47036 * 180.02562 * 15 14 13 17 17 C 1.35901 * 117.00221 * 180.02562 * 16 15 14 18 18 C 1.38705 * 120.06062 * 179.97438 * 17 16 15 19 19 C 1.38165 * 119.94474 * 179.97438 * 18 17 16 20 20 C 1.50710 * 119.97241 * 180.02562 * 19 18 17 21 21 O 1.42900 * 109.46783 * 299.99946 * 20 19 18 22 22 Si 1.86295 * 109.46992 * 180.02562 * 20 19 18 23 23 C 1.38248 * 120.05851 * 359.97438 * 19 18 17 24 24 C 1.38288 * 120.10611 * 0.02562 * 23 19 18 25 25 C 1.38118 * 120.05741 * 359.67970 * 24 23 19 26 26 C 1.53780 * 87.17163 * 334.57326 * 8 7 5 27 27 H 1.08995 * 109.47074 * 305.51619 * 1 2 3 28 28 H 1.08997 * 109.47114 * 65.51675 * 1 2 3 29 29 H 1.08998 * 109.46612 * 185.51372 * 1 2 3 30 30 H 1.08996 * 113.61346 * 25.48568 * 7 5 2 31 31 H 1.09003 * 113.69581 * 254.50373 * 7 5 2 32 32 H 0.96994 * 120.00700 * 285.86593 * 10 8 7 33 33 H 1.08996 * 109.47390 * 60.00019 * 13 11 10 34 34 H 1.09001 * 109.46948 * 299.99661 * 13 11 10 35 35 H 1.09001 * 109.47502 * 60.00161 * 14 13 11 36 36 H 1.09001 * 109.47289 * 299.99957 * 14 13 11 37 37 H 1.09001 * 109.47002 * 299.99574 * 15 14 13 38 38 H 1.08993 * 109.46955 * 60.00011 * 15 14 13 39 39 H 1.08001 * 120.02664 * 359.97316 * 18 17 16 40 40 H 1.09000 * 109.47100 * 59.99605 * 20 19 18 41 41 H 0.96698 * 113.99541 * 179.97438 * 21 20 19 42 42 H 1.48498 * 110.00046 * 298.67855 * 22 20 19 43 43 H 1.48502 * 110.00279 * 59.99929 * 22 20 19 44 44 H 1.07995 * 119.94296 * 179.97438 * 23 19 18 45 45 H 1.08001 * 119.96691 * 179.97438 * 24 23 19 46 46 H 1.08004 * 120.02586 * 180.31846 * 25 24 23 47 47 H 1.09006 * 113.61877 * 140.02571 * 26 8 7 48 48 H 1.09001 * 113.61655 * 270.83947 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3470 0.0000 4 8 2.2668 -0.8842 -1.0161 5 6 2.1887 -0.7356 1.6153 6 1 1.6288 -0.2760 2.4298 7 6 2.1357 -2.2752 1.6217 8 6 3.3793 -2.2333 2.5254 9 1 4.1160 -3.0014 2.2902 10 7 3.0643 -2.1659 3.9545 11 6 3.2303 -3.2533 4.7332 12 8 3.6411 -4.2876 4.2509 13 6 2.9058 -3.1843 6.2032 14 6 3.1812 -4.5428 6.8507 15 6 2.8510 -4.4728 8.3431 16 8 3.1088 -5.7415 8.9480 17 6 2.8653 -5.8507 10.2805 18 6 3.0930 -7.0538 10.9322 19 6 2.8450 -7.1619 12.2871 20 6 3.0928 -8.4687 12.9959 21 8 2.2788 -9.4884 12.4131 22 14 2.6637 -8.2877 14.7997 23 6 2.3709 -6.0722 12.9934 24 6 2.1431 -4.8716 12.3460 25 6 2.3951 -4.7567 10.9929 26 6 3.6946 -0.8648 1.8990 27 1 -0.3633 0.5970 0.8364 28 1 -0.3633 0.4259 -0.9352 29 1 -0.3632 -1.0229 0.0987 30 1 2.3205 -2.7225 0.6451 31 1 1.2518 -2.6810 2.1139 32 1 2.7361 -1.3387 4.3404 33 1 1.8545 -2.9267 6.3315 34 1 3.5266 -2.4239 6.6770 35 1 4.2326 -4.8000 6.7226 36 1 2.5607 -5.3036 6.3770 37 1 3.4712 -3.7120 8.8171 38 1 1.7995 -4.2159 8.4709 39 1 3.4637 -7.9053 10.3809 40 1 4.1434 -8.7419 12.8975 41 1 2.3870 -10.3586 12.8205 42 1 3.5249 -7.2522 15.4252 43 1 1.2336 -7.9156 14.9469 44 1 2.1773 -6.1589 14.0524 45 1 1.7722 -4.0219 12.8999 46 1 2.2219 -3.8173 10.4888 47 1 4.0685 -0.1326 2.6147 48 1 4.3061 -0.9270 0.9988 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12912156_4549616.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:30:02 Heat of formation + Delta-G solvation = -125.263483 kcal Electronic energy + Delta-G solvation = -29731.896753 eV Core-core repulsion = 25268.076782 eV Total energy + Delta-G solvation = -4463.819971 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.137 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.44645 -41.25045 -39.52384 -39.10282 -38.03207 -37.36171 -37.08131 -34.95080 -34.32158 -32.67211 -31.38241 -30.42859 -28.68496 -26.99262 -26.93751 -26.39473 -23.83102 -23.62867 -21.89446 -21.53135 -21.03377 -19.71369 -19.01078 -18.59071 -18.41911 -17.82837 -17.51730 -17.47673 -17.15629 -17.08203 -17.00351 -16.84710 -16.36229 -15.91050 -15.58216 -15.39507 -14.90038 -14.73359 -14.63217 -14.40042 -14.31979 -14.07596 -14.01248 -13.93250 -13.81157 -13.67599 -13.49511 -13.26020 -13.18711 -13.16362 -13.05711 -12.62282 -12.47009 -12.31262 -12.11888 -12.10007 -12.03470 -11.81923 -11.77343 -11.65031 -11.13427 -10.98001 -10.43315 -10.17897 -9.96214 -9.37572 -4.93518 -0.95683 0.08721 0.24867 1.27731 1.55194 1.64829 1.78761 1.85354 1.96758 2.28297 2.52820 2.56690 2.83491 3.18561 3.37510 3.38926 3.52904 3.60481 3.70806 3.79734 3.83667 3.86343 3.87348 3.98894 4.07282 4.10747 4.16418 4.22029 4.29867 4.32378 4.39127 4.41553 4.47436 4.50809 4.59153 4.61289 4.61924 4.74711 4.82764 4.86527 4.94411 4.96368 4.99284 5.08788 5.18409 5.22085 5.30888 5.46348 5.58928 6.33412 6.49169 6.87715 7.21314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.641 4.641 2 S 2.417 3.583 3 O -0.987 6.987 4 O -0.984 6.984 5 C -0.582 4.582 6 H 0.192 0.808 7 C -0.127 4.127 8 C 0.123 3.877 9 H 0.088 0.912 10 N -0.699 5.699 11 C 0.512 3.488 12 O -0.586 6.586 13 C -0.127 4.127 14 C -0.102 4.102 15 C 0.055 3.945 16 O -0.334 6.334 17 C 0.123 3.877 18 C -0.147 4.147 19 C -0.053 4.053 20 C -0.088 4.088 21 O -0.565 6.565 22 Si 0.786 3.214 23 C -0.185 4.185 24 C -0.074 4.074 25 C -0.205 4.205 26 C -0.120 4.120 27 H 0.155 0.845 28 H 0.129 0.871 29 H 0.150 0.850 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.421 0.579 33 H 0.131 0.869 34 H 0.129 0.871 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.127 0.873 40 H 0.092 0.908 41 H 0.404 0.596 42 H -0.285 1.285 43 H -0.295 1.295 44 H 0.120 0.880 45 H 0.155 0.845 46 H 0.161 0.839 47 H 0.112 0.888 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.117 2.936 6.877 8.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.793 4.793 2 S 2.605 3.395 3 O -0.984 6.984 4 O -0.981 6.981 5 C -0.693 4.693 6 H 0.209 0.791 7 C -0.167 4.167 8 C 0.016 3.984 9 H 0.106 0.894 10 N -0.352 5.352 11 C 0.300 3.700 12 O -0.465 6.465 13 C -0.166 4.166 14 C -0.140 4.140 15 C -0.019 4.019 16 O -0.248 6.248 17 C 0.078 3.922 18 C -0.166 4.166 19 C -0.053 4.053 20 C -0.197 4.197 21 O -0.375 6.375 22 Si 0.691 3.309 23 C -0.202 4.202 24 C -0.091 4.091 25 C -0.223 4.223 26 C -0.159 4.159 27 H 0.174 0.826 28 H 0.148 0.852 29 H 0.168 0.832 30 H 0.124 0.876 31 H 0.124 0.876 32 H 0.260 0.740 33 H 0.149 0.851 34 H 0.147 0.853 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.145 0.855 40 H 0.110 0.890 41 H 0.255 0.745 42 H -0.212 1.212 43 H -0.223 1.223 44 H 0.138 0.862 45 H 0.173 0.827 46 H 0.178 0.822 47 H 0.131 0.869 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.617 3.413 5.941 7.748 hybrid contribution -0.428 0.415 -0.186 0.625 sum -4.045 3.828 5.755 8.008 Atomic orbital electron populations 1.30097 1.22339 1.13693 1.13211 1.07591 0.79935 0.74085 0.77848 1.93554 1.81000 1.36510 1.87371 1.93557 1.81010 1.67667 1.55874 1.31706 1.06979 1.08009 1.22587 0.79075 1.23306 1.00897 0.90173 1.02299 1.21640 0.97587 0.98166 0.81044 0.89394 1.45522 1.67315 1.14736 1.07613 1.21199 0.76042 0.82739 0.89976 1.90759 1.47130 1.32033 1.76617 1.21539 1.06814 0.98700 0.89571 1.21162 1.02785 0.97849 0.92243 1.23052 1.02393 0.83339 0.93144 1.86062 1.82325 1.37044 1.19348 1.19179 0.95328 0.94551 0.83143 1.20361 1.05568 0.96621 0.94010 1.19513 0.97591 0.94801 0.93386 1.25006 0.98526 0.87168 1.09000 1.86447 1.65734 1.22004 1.63332 0.94297 0.76545 0.86314 0.73707 1.20993 1.04910 0.94770 0.99560 1.21222 0.96268 0.97492 0.94156 1.21587 1.05920 0.99246 0.95575 1.23063 0.91681 0.97989 1.03157 0.82619 0.85202 0.83160 0.87605 0.87639 0.74037 0.85061 0.85312 0.92102 0.92031 0.89728 0.89787 0.85497 0.89001 0.74485 1.21216 1.22313 0.86216 0.82695 0.82171 0.86941 0.88204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 6.95 10.62 113.37 1.20 8.15 16 2 S 2.42 -7.89 5.35 -56.49 -0.30 -8.19 16 3 O -0.99 -5.63 18.10 -127.37 -2.31 -7.93 16 4 O -0.98 -5.86 17.20 -127.37 -2.19 -8.05 16 5 C -0.58 5.77 4.06 31.21 0.13 5.90 16 6 H 0.19 -3.50 8.14 -2.39 -0.02 -3.51 16 7 C -0.13 0.86 7.44 31.21 0.23 1.09 16 8 C 0.12 -0.51 4.30 45.52 0.20 -0.31 16 9 H 0.09 0.14 7.50 -2.39 -0.02 0.13 16 10 N -0.70 5.33 5.26 -440.04 -2.32 3.01 16 11 C 0.51 -0.83 7.83 87.66 0.69 -0.15 16 12 O -0.59 -5.81 15.60 -3.04 -0.05 -5.86 16 13 C -0.13 1.14 5.70 29.85 0.17 1.31 16 14 C -0.10 0.15 4.87 30.60 0.15 0.30 16 15 C 0.06 -0.16 4.74 71.98 0.34 0.18 16 16 O -0.33 -2.05 10.14 -92.44 -0.94 -2.98 16 17 C 0.12 0.81 6.69 22.51 0.15 0.96 16 18 C -0.15 -1.28 9.55 22.36 0.21 -1.07 16 19 C -0.05 -0.38 5.42 -19.88 -0.11 -0.48 16 20 C -0.09 -0.14 2.81 71.24 0.20 0.06 16 21 O -0.57 -1.17 12.74 -148.98 -1.90 -3.07 16 22 Si 0.79 -1.14 29.79 68.60 2.04 0.91 16 23 C -0.18 -1.08 8.67 22.28 0.19 -0.89 16 24 C -0.07 -0.17 10.04 22.25 0.22 0.06 16 25 C -0.20 -0.36 9.04 22.37 0.20 -0.16 16 26 C -0.12 0.79 7.41 31.12 0.23 1.02 16 27 H 0.16 -2.49 8.14 -2.39 -0.02 -2.51 16 28 H 0.13 -1.26 8.14 -2.39 -0.02 -1.28 16 29 H 0.15 -2.17 8.14 -2.39 -0.02 -2.19 16 30 H 0.11 -0.45 7.38 -2.39 -0.02 -0.47 16 31 H 0.11 -1.00 8.14 -2.39 -0.02 -1.02 16 32 H 0.42 -6.46 8.70 -92.71 -0.81 -7.26 16 33 H 0.13 -1.97 8.14 -2.39 -0.02 -1.99 16 34 H 0.13 -1.85 8.14 -2.39 -0.02 -1.86 16 35 H 0.06 0.20 8.10 -2.39 -0.02 0.18 16 36 H 0.06 0.19 8.10 -2.39 -0.02 0.17 16 37 H 0.08 -0.59 7.65 -2.39 -0.02 -0.61 16 38 H 0.08 -0.58 7.68 -2.39 -0.02 -0.60 16 39 H 0.13 1.16 8.06 -2.91 -0.02 1.13 16 40 H 0.09 -0.19 7.96 -2.39 -0.02 -0.20 16 41 H 0.40 -3.62 8.74 -74.06 -0.65 -4.27 16 42 H -0.28 -0.94 7.11 99.48 0.71 -0.23 16 43 H -0.30 -1.72 7.11 99.48 0.71 -1.01 16 44 H 0.12 0.55 4.87 -2.91 -0.01 0.54 16 45 H 0.16 -0.56 8.06 -2.91 -0.02 -0.58 16 46 H 0.16 -0.82 6.30 -2.91 -0.02 -0.83 16 47 H 0.11 -1.12 8.14 -2.38 -0.02 -1.14 16 48 H 0.10 -0.45 8.10 -2.39 -0.02 -0.47 16 Total: 0.00 -42.14 409.90 -3.97 -46.10 By element: Atomic # 1 Polarization: -29.48 SS G_CDS: -0.42 Total: -29.90 kcal Atomic # 6 Polarization: 11.56 SS G_CDS: 4.41 Total: 15.97 kcal Atomic # 7 Polarization: 5.33 SS G_CDS: -2.32 Total: 3.01 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -7.38 Total: -27.90 kcal Atomic # 14 Polarization: -1.14 SS G_CDS: 2.04 Total: 0.91 kcal Atomic # 16 Polarization: -7.89 SS G_CDS: -0.30 Total: -8.19 kcal Total: -42.14 -3.97 -46.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12912156_4549616.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.159 kcal (2) G-P(sol) polarization free energy of solvation -42.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds