Wall clock time and date at job start Tue Mar 9 2021 13:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42099 * 108.57684 * 2 1 4 4 O 1.42099 * 108.58042 * 228.97649 * 2 1 3 5 5 C 1.81397 * 101.92201 * 114.48563 * 2 1 3 6 6 H 1.08997 * 112.85048 * 311.20326 * 5 2 1 7 7 C 1.53962 * 113.73937 * 82.40432 * 5 2 1 8 8 C 1.53786 * 87.01719 * 139.94614 * 7 5 2 9 9 H 1.09002 * 113.61357 * 220.04719 * 8 7 5 10 10 N 1.46497 * 113.61643 * 89.22773 * 8 7 5 11 11 C 1.34780 * 119.99653 * 105.85894 * 10 8 7 12 12 O 1.21609 * 120.00567 * 0.02562 * 11 10 8 13 13 C 1.47383 * 119.99405 * 179.97438 * 11 10 8 14 14 C 1.36428 * 127.18612 * 180.02562 * 13 11 10 15 15 C 1.50693 * 125.80108 * 0.02562 * 14 13 11 16 16 O 1.42906 * 109.47028 * 90.00387 * 15 14 13 17 17 C 1.35892 * 117.00198 * 179.97438 * 16 15 14 18 18 C 1.38731 * 120.05650 * 359.72149 * 17 16 15 19 19 C 1.38151 * 119.94564 * 179.74152 * 18 17 16 20 20 C 1.38264 * 120.05301 * 0.51702 * 19 18 17 21 21 C 1.50700 * 119.94447 * 179.74280 * 20 19 18 22 22 O 1.42893 * 109.47288 * 245.01890 * 21 20 19 23 23 Si 1.86300 * 109.47018 * 5.01854 * 21 20 19 24 24 C 1.38266 * 120.11394 * 359.75491 * 20 19 18 25 25 C 1.38146 * 120.05468 * 359.97438 * 24 20 19 26 26 O 1.33653 * 108.39370 * 180.02562 * 14 13 11 27 27 C 1.34224 * 110.90908 * 0.02562 * 26 14 13 28 28 C 1.34174 * 109.12417 * 359.70767 * 27 26 14 29 29 C 1.53781 * 87.17350 * 334.63802 * 8 7 5 30 30 H 1.08997 * 109.47343 * 305.51337 * 1 2 3 31 31 H 1.08997 * 109.46786 * 65.51537 * 1 2 3 32 32 H 1.09000 * 109.46915 * 185.50916 * 1 2 3 33 33 H 1.08993 * 113.61598 * 25.42596 * 7 5 2 34 34 H 1.09000 * 113.66569 * 254.46951 * 7 5 2 35 35 H 0.96995 * 120.00146 * 285.86755 * 10 8 7 36 36 H 1.09000 * 109.47027 * 209.99692 * 15 14 13 37 37 H 1.09000 * 109.47643 * 330.00231 * 15 14 13 38 38 H 1.08002 * 120.02540 * 359.97438 * 18 17 16 39 39 H 1.08002 * 119.97062 * 180.22672 * 19 18 17 40 40 H 1.08998 * 109.47314 * 125.01277 * 21 20 19 41 41 H 0.96701 * 114.00205 * 59.99579 * 22 21 20 42 42 H 1.48496 * 110.00180 * 58.67804 * 23 21 20 43 43 H 1.48501 * 109.99938 * 180.02562 * 23 21 20 44 44 H 1.07997 * 119.97715 * 179.97438 * 24 20 19 45 45 H 1.08003 * 120.02914 * 179.97438 * 25 24 20 46 46 H 1.07994 * 125.43515 * 180.02562 * 27 26 14 47 47 H 1.07996 * 127.02514 * 180.27123 * 28 27 26 48 48 H 1.09001 * 113.61695 * 139.93969 * 29 8 7 49 49 H 1.08996 * 113.61580 * 270.76247 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2668 -0.8841 -1.0162 5 6 2.1888 -0.7356 1.6152 6 1 1.6288 -0.2762 2.4297 7 6 2.1345 -2.2743 1.6231 8 6 3.3793 -2.2334 2.5253 9 1 4.1154 -3.0018 2.2888 10 7 3.0662 -2.1664 3.9548 11 6 3.2326 -3.2543 4.7328 12 8 3.6432 -4.2914 4.2483 13 6 2.9181 -3.1866 6.1711 14 6 3.0315 -4.1904 7.0881 15 6 3.5096 -5.5915 6.8068 16 8 4.9271 -5.6543 6.9774 17 6 5.5219 -6.8568 6.7608 18 6 4.7564 -7.9552 6.3971 19 6 5.3642 -9.1753 6.1722 20 6 6.7328 -9.3048 6.3197 21 6 7.3925 -10.6382 6.0794 22 8 7.9534 -11.1195 7.3024 23 14 6.1261 -11.8542 5.4562 24 6 7.4973 -8.2129 6.6876 25 6 6.8950 -6.9894 6.9082 26 8 2.6463 -3.7198 8.2783 27 6 2.2778 -2.4323 8.1879 28 6 2.4213 -2.0221 6.9185 29 6 3.6947 -0.8648 1.8989 30 1 -0.3634 0.5969 0.8365 31 1 -0.3633 0.4259 -0.9352 32 1 -0.3633 -1.0229 0.0987 33 1 2.3175 -2.7226 0.6467 34 1 1.2507 -2.6784 2.1168 35 1 2.7390 -1.3391 4.3414 36 1 3.0295 -6.2848 7.4974 37 1 3.2546 -5.8638 5.7826 38 1 3.6867 -7.8556 6.2862 39 1 4.7691 -10.0297 5.8855 40 1 8.1826 -10.5243 5.3373 41 1 7.3059 -11.2447 8.0096 42 1 5.5123 -11.3501 4.2015 43 1 6.7639 -13.1735 5.2159 44 1 8.5661 -8.3167 6.8025 45 1 7.4925 -6.1369 7.1959 46 1 1.9271 -1.8225 9.0072 47 1 2.2122 -1.0382 6.5255 48 1 4.0685 -0.1327 2.6147 49 1 4.3061 -0.9270 0.9987 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12912156_4549634.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:30:23 Heat of formation + Delta-G solvation = -91.343571 kcal Electronic energy + Delta-G solvation = -35677.387779 eV Core-core repulsion = 30667.215692 eV Total energy + Delta-G solvation = -5010.172088 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 408.121 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -43.72439 -41.32233 -41.21470 -39.37987 -39.14581 -38.02220 -37.18493 -37.07279 -34.77041 -33.74215 -32.81572 -31.99548 -31.39410 -30.41771 -28.16545 -26.94709 -26.92296 -26.14704 -24.59238 -23.80988 -22.52950 -22.29559 -21.29759 -20.75874 -19.71049 -19.51325 -19.26608 -18.35177 -18.13365 -17.38225 -17.23528 -17.16156 -17.12447 -16.93468 -16.90153 -16.67004 -16.41026 -16.00576 -15.89482 -15.79902 -15.53853 -15.15816 -14.72559 -14.62222 -14.36645 -14.32920 -14.17853 -14.05646 -13.93166 -13.82625 -13.78254 -13.69711 -13.65151 -13.48646 -13.16894 -13.09599 -13.05091 -12.28558 -12.13658 -12.09095 -12.08182 -12.01778 -11.82989 -11.78091 -11.24341 -11.07878 -10.97666 -10.41577 -10.25089 -10.07134 -9.83963 -9.25792 -5.01147 -0.94991 -0.05698 0.25429 0.27839 1.02691 1.32393 1.50142 1.64212 1.80097 1.96389 1.96903 2.06739 2.45109 2.57333 2.63099 2.83803 3.17369 3.33946 3.39194 3.51115 3.55437 3.59490 3.68411 3.70735 3.79267 3.87091 3.90597 3.94400 4.08439 4.10857 4.22789 4.27990 4.40745 4.43349 4.45623 4.48455 4.50476 4.57578 4.59963 4.64866 4.73109 4.80360 4.82789 4.92339 4.93997 4.96990 5.12613 5.23450 5.26504 5.39437 5.46264 5.66999 5.88396 6.24676 6.39406 6.79175 7.06097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.641 4.641 2 S 2.420 3.580 3 O -0.987 6.987 4 O -0.982 6.982 5 C -0.585 4.585 6 H 0.190 0.810 7 C -0.124 4.124 8 C 0.125 3.875 9 H 0.092 0.908 10 N -0.688 5.688 11 C 0.587 3.413 12 O -0.568 6.568 13 C -0.224 4.224 14 C 0.042 3.958 15 C 0.133 3.867 16 O -0.323 6.323 17 C 0.125 3.875 18 C -0.204 4.204 19 C -0.074 4.074 20 C -0.162 4.162 21 C -0.069 4.069 22 O -0.556 6.556 23 Si 0.776 3.224 24 C -0.059 4.059 25 C -0.164 4.164 26 O -0.177 6.177 27 C -0.012 4.012 28 C -0.195 4.195 29 C -0.120 4.120 30 H 0.155 0.845 31 H 0.130 0.870 32 H 0.150 0.850 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.418 0.582 36 H 0.103 0.897 37 H 0.108 0.892 38 H 0.150 0.850 39 H 0.152 0.848 40 H 0.104 0.896 41 H 0.395 0.605 42 H -0.288 1.288 43 H -0.299 1.299 44 H 0.137 0.863 45 H 0.132 0.868 46 H 0.251 0.749 47 H 0.194 0.806 48 H 0.110 0.890 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.368 2.750 6.357 11.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.793 4.793 2 S 2.608 3.392 3 O -0.984 6.984 4 O -0.980 6.980 5 C -0.695 4.695 6 H 0.208 0.792 7 C -0.163 4.163 8 C 0.018 3.982 9 H 0.111 0.889 10 N -0.340 5.340 11 C 0.376 3.624 12 O -0.449 6.449 13 C -0.229 4.229 14 C -0.011 4.011 15 C 0.059 3.941 16 O -0.237 6.237 17 C 0.080 3.920 18 C -0.223 4.223 19 C -0.091 4.091 20 C -0.162 4.162 21 C -0.179 4.179 22 O -0.364 6.364 23 Si 0.683 3.317 24 C -0.077 4.077 25 C -0.182 4.182 26 O -0.073 6.073 27 C -0.078 4.078 28 C -0.214 4.214 29 C -0.159 4.159 30 H 0.173 0.827 31 H 0.149 0.851 32 H 0.169 0.831 33 H 0.128 0.872 34 H 0.124 0.876 35 H 0.256 0.744 36 H 0.121 0.879 37 H 0.126 0.874 38 H 0.168 0.832 39 H 0.170 0.830 40 H 0.122 0.878 41 H 0.245 0.755 42 H -0.215 1.215 43 H -0.227 1.227 44 H 0.155 0.845 45 H 0.150 0.850 46 H 0.267 0.733 47 H 0.211 0.789 48 H 0.128 0.872 49 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -8.104 1.894 4.653 9.535 hybrid contribution -0.088 0.858 0.175 0.880 sum -8.192 2.751 4.829 9.899 Atomic orbital electron populations 1.30096 1.22283 1.13721 1.13216 1.07522 0.79926 0.74055 0.77681 1.93554 1.81022 1.36514 1.87319 1.93557 1.81014 1.67668 1.55735 1.31714 1.06834 1.08161 1.22811 0.79224 1.23285 1.00619 0.90157 1.02273 1.21694 0.97977 0.98556 0.79968 0.88949 1.45236 1.66933 1.13989 1.07850 1.17424 0.76484 0.83490 0.84983 1.90796 1.47266 1.31305 1.75503 1.21327 1.11527 0.95841 0.94191 1.22056 1.00389 0.95719 0.82902 1.21174 0.79411 0.89559 1.03967 1.86047 1.22317 1.30514 1.84869 1.19162 0.92749 0.84185 0.95924 1.21433 1.01290 0.92799 1.06745 1.21020 0.93680 0.97384 0.97063 1.20352 0.94154 0.96715 1.04995 1.25116 1.04966 0.96704 0.91144 1.86461 1.39720 1.87278 1.22975 0.93817 0.80586 0.74534 0.82781 1.20942 1.00512 0.90739 0.95546 1.20619 0.91904 0.99274 1.06415 1.83805 1.64025 1.27713 1.31725 1.24917 1.01359 0.80855 1.00663 1.23257 1.05409 0.99694 0.93031 1.23067 0.91857 0.97773 1.03175 0.82661 0.85148 0.83118 0.87169 0.87572 0.74372 0.87910 0.87438 0.83195 0.83049 0.87834 0.75501 1.21507 1.22680 0.84490 0.85006 0.73294 0.78867 0.87160 0.87843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 7.07 10.62 113.37 1.20 8.28 16 2 S 2.42 -8.22 5.35 -56.49 -0.30 -8.52 16 3 O -0.99 -5.58 18.10 -127.37 -2.30 -7.89 16 4 O -0.98 -5.51 17.21 -127.37 -2.19 -7.71 16 5 C -0.58 5.57 4.05 31.18 0.13 5.69 16 6 H 0.19 -3.34 8.14 -2.39 -0.02 -3.36 16 7 C -0.12 0.83 7.44 31.18 0.23 1.06 16 8 C 0.12 -0.39 4.30 45.52 0.20 -0.19 16 9 H 0.09 0.19 7.50 -2.39 -0.02 0.17 16 10 N -0.69 2.86 5.26 -443.33 -2.33 0.53 16 11 C 0.59 1.91 7.81 86.65 0.68 2.58 16 12 O -0.57 -6.18 14.46 -4.06 -0.06 -6.24 16 13 C -0.22 -0.22 6.32 -18.99 -0.12 -0.34 16 14 C 0.04 0.13 7.00 25.26 0.18 0.30 16 15 C 0.13 0.41 4.74 71.23 0.34 0.75 16 16 O -0.32 -2.62 10.12 -92.34 -0.93 -3.55 16 17 C 0.12 0.83 6.69 22.51 0.15 0.98 16 18 C -0.20 -0.53 9.04 22.37 0.20 -0.32 16 19 C -0.07 -0.06 8.66 22.26 0.19 0.13 16 20 C -0.16 -0.41 5.35 -19.85 -0.11 -0.52 16 21 C -0.07 -0.09 2.80 71.24 0.20 0.11 16 22 O -0.56 -0.90 12.83 -148.98 -1.91 -2.81 16 23 Si 0.78 -0.76 29.80 68.60 2.04 1.29 16 24 C -0.06 -0.26 9.68 22.25 0.22 -0.05 16 25 C -0.16 -1.04 9.99 22.37 0.22 -0.81 16 26 O -0.18 -0.09 10.52 4.38 0.05 -0.04 16 27 C -0.01 0.08 12.03 66.89 0.80 0.89 16 28 C -0.20 1.28 10.60 23.65 0.25 1.53 16 29 C -0.12 0.70 7.41 31.12 0.23 0.93 16 30 H 0.16 -2.49 8.14 -2.39 -0.02 -2.51 16 31 H 0.13 -1.30 8.14 -2.39 -0.02 -1.32 16 32 H 0.15 -2.22 8.14 -2.39 -0.02 -2.24 16 33 H 0.11 -0.54 7.38 -2.39 -0.02 -0.55 16 34 H 0.11 -1.00 8.14 -2.39 -0.02 -1.01 16 35 H 0.42 -4.58 7.88 -92.71 -0.73 -5.31 16 36 H 0.10 -0.20 7.65 -2.39 -0.02 -0.22 16 37 H 0.11 0.44 6.02 -2.39 -0.01 0.43 16 38 H 0.15 -0.29 6.30 -2.91 -0.02 -0.31 16 39 H 0.15 -0.69 4.90 -2.91 -0.01 -0.70 16 40 H 0.10 0.28 7.96 -2.39 -0.02 0.26 16 41 H 0.40 -2.61 8.70 -74.06 -0.64 -3.25 16 42 H -0.29 -1.20 7.11 99.48 0.71 -0.49 16 43 H -0.30 -1.90 7.11 99.48 0.71 -1.20 16 44 H 0.14 0.38 8.06 -2.91 -0.02 0.35 16 45 H 0.13 0.69 8.06 -2.91 -0.02 0.67 16 46 H 0.25 -3.86 8.06 -2.91 -0.02 -3.89 16 47 H 0.19 -2.75 7.74 -2.91 -0.02 -2.78 16 48 H 0.11 -0.95 8.14 -2.39 -0.02 -0.97 16 49 H 0.10 -0.44 8.10 -2.39 -0.02 -0.46 16 Total: 0.00 -39.57 425.53 -3.06 -42.64 By element: Atomic # 1 Polarization: -28.39 SS G_CDS: -0.31 Total: -28.70 kcal Atomic # 6 Polarization: 15.81 SS G_CDS: 5.19 Total: 21.00 kcal Atomic # 7 Polarization: 2.86 SS G_CDS: -2.33 Total: 0.53 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -7.36 Total: -28.23 kcal Atomic # 14 Polarization: -0.76 SS G_CDS: 2.04 Total: 1.29 kcal Atomic # 16 Polarization: -8.22 SS G_CDS: -0.30 Total: -8.52 kcal Total: -39.57 -3.06 -42.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12912156_4549634.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.708 kcal (2) G-P(sol) polarization free energy of solvation -39.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds