Wall clock time and date at job start Tue Mar 9 2021 13:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42102 * 108.57582 * 2 1 4 4 O 1.42100 * 108.57993 * 228.97895 * 2 1 3 5 5 C 1.81402 * 101.92252 * 114.49025 * 2 1 3 6 6 H 1.08994 * 112.85158 * 53.80036 * 5 2 1 7 7 C 1.53782 * 113.61129 * 185.00446 * 5 2 1 8 8 C 1.53786 * 87.07909 * 139.98017 * 7 5 2 9 9 H 1.09002 * 113.61357 * 220.01470 * 8 7 5 10 10 N 1.46497 * 113.61643 * 89.19525 * 8 7 5 11 11 C 1.34775 * 120.00126 * 156.52505 * 10 8 7 12 12 O 1.21286 * 119.99866 * 0.02562 * 11 10 8 13 13 C 1.50697 * 120.00136 * 180.02562 * 11 10 8 14 14 O 1.42898 * 109.47341 * 180.02562 * 13 11 10 15 15 C 1.35914 * 117.00311 * 179.97438 * 14 13 11 16 16 C 1.38791 * 120.06171 * 179.71851 * 15 14 13 17 17 Br 1.89099 * 120.03284 * 0.02562 * 16 15 14 18 18 C 1.38240 * 119.92821 * 179.77243 * 16 15 14 19 19 C 1.38242 * 120.04472 * 0.48172 * 18 16 15 20 20 C 1.50701 * 119.93682 * 179.76975 * 19 18 16 21 21 O 1.42900 * 109.46795 * 245.02202 * 20 19 18 22 22 Si 1.86300 * 109.47411 * 5.02427 * 20 19 18 23 23 C 1.38278 * 120.11707 * 359.79423 * 19 18 16 24 24 C 1.38138 * 120.07330 * 359.95676 * 23 19 18 25 25 C 1.53781 * 87.17350 * 334.60554 * 8 7 5 26 26 H 1.08992 * 109.47107 * 305.50903 * 1 2 3 27 27 H 1.08996 * 109.47486 * 65.51359 * 1 2 3 28 28 H 1.09008 * 109.47001 * 185.51095 * 1 2 3 29 29 H 1.08993 * 113.61979 * 25.43115 * 7 5 2 30 30 H 1.09000 * 113.68722 * 254.53783 * 7 5 2 31 31 H 0.97006 * 120.00058 * 336.53149 * 10 8 7 32 32 H 1.09012 * 109.47186 * 299.99920 * 13 11 10 33 33 H 1.09001 * 109.47748 * 59.99944 * 13 11 10 34 34 H 1.08003 * 119.97046 * 180.23508 * 18 16 15 35 35 H 1.09002 * 109.46796 * 125.02334 * 20 19 18 36 36 H 0.96708 * 113.99992 * 180.02562 * 21 20 19 37 37 H 1.48498 * 109.99652 * 299.99895 * 22 20 19 38 38 H 1.48499 * 110.00100 * 61.31969 * 22 20 19 39 39 H 1.07999 * 119.96160 * 179.97438 * 23 19 18 40 40 H 1.08005 * 120.02612 * 180.02562 * 24 23 19 41 41 H 1.09001 * 113.61695 * 139.93969 * 25 8 7 42 42 H 1.08997 * 113.61223 * 270.84552 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2668 -0.8840 -1.0162 5 6 2.1888 -0.7358 1.6152 6 1 1.6958 -1.6958 1.7676 7 6 3.6895 -0.7535 1.9507 8 6 3.2922 -0.3793 3.3885 9 1 3.9578 0.3504 3.8495 10 7 3.0365 -1.5384 4.2472 11 6 3.1465 -1.4229 5.5855 12 8 3.4566 -0.3592 6.0789 13 6 2.8841 -2.6153 6.4688 14 8 3.0629 -2.2432 7.8369 15 6 2.8623 -3.2102 8.7706 16 6 3.0245 -2.9199 10.1181 17 35 3.5241 -1.1776 10.6574 18 6 2.8152 -3.9043 11.0658 19 6 2.4546 -5.1792 10.6715 20 6 2.2321 -6.2519 11.7064 21 8 3.2176 -7.2750 11.5513 22 14 2.3700 -5.5098 13.4096 23 6 2.2981 -5.4721 9.3291 24 6 2.5009 -4.4908 8.3783 25 6 2.0164 0.2399 2.7936 26 1 -0.3633 0.5969 0.8365 27 1 -0.3634 0.4259 -0.9352 28 1 -0.3633 -1.0230 0.0987 29 1 4.2604 0.0217 1.4397 30 1 4.1454 -1.7400 1.8664 31 1 2.7882 -2.3890 3.8526 32 1 1.8615 -2.9616 6.3175 33 1 3.5798 -3.4153 6.2156 34 1 2.9375 -3.6781 12.1148 35 1 1.2388 -6.6815 11.5766 36 1 3.1350 -8.0002 12.1858 37 1 3.7198 -4.9206 13.5991 38 1 1.3297 -4.4663 13.5947 39 1 2.0167 -6.4691 9.0238 40 1 2.3781 -4.7202 7.3301 41 1 1.1222 0.0537 3.3886 42 1 2.1291 1.2872 2.5135 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12912156_6201210.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:31:30 Heat of formation + Delta-G solvation = -102.600252 kcal Electronic energy + Delta-G solvation = -28758.057354 eV Core-core repulsion = 24266.477369 eV Total energy + Delta-G solvation = -4491.579985 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 420.017 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.83373 -41.15210 -39.67977 -38.83379 -38.01270 -37.26353 -37.06953 -34.57815 -33.64553 -32.32810 -30.68213 -30.41652 -29.72350 -26.93503 -26.80764 -26.17028 -24.20663 -22.48881 -21.96341 -21.11306 -19.77625 -19.57893 -18.79053 -18.35859 -18.01510 -17.56222 -17.23803 -17.12996 -17.09990 -16.89342 -16.66542 -16.25644 -15.83208 -15.64757 -15.22821 -14.92284 -14.57358 -14.37118 -14.28626 -14.19147 -14.00747 -13.91982 -13.90952 -13.74146 -13.69892 -13.65248 -13.16950 -13.05243 -12.56374 -12.33148 -12.22957 -12.14906 -12.11499 -12.03331 -11.87825 -11.81665 -11.36870 -11.16471 -11.03487 -10.31427 -10.27444 -10.13908 -9.41850 -5.00845 -0.94572 -0.17323 -0.04481 0.47403 1.27693 1.28471 1.36773 1.59084 1.81045 1.95072 2.26673 2.38264 2.57223 2.85955 3.18010 3.27659 3.37827 3.39411 3.53558 3.58214 3.74468 3.80384 3.88601 3.96903 3.99061 4.03024 4.08416 4.20432 4.22623 4.31306 4.46052 4.51938 4.59320 4.60145 4.68125 4.70254 4.82753 4.90474 4.92793 4.97159 5.19152 5.32981 5.38383 5.96462 6.38111 6.92513 7.07304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.641 4.641 2 S 2.418 3.582 3 O -0.984 6.984 4 O -0.987 6.987 5 C -0.582 4.582 6 H 0.194 0.806 7 C -0.119 4.119 8 C 0.126 3.874 9 H 0.089 0.911 10 N -0.689 5.689 11 C 0.516 3.484 12 O -0.565 6.565 13 C 0.031 3.969 14 O -0.305 6.305 15 C 0.152 3.848 16 C -0.143 4.143 17 Br -0.051 7.051 18 C -0.077 4.077 19 C -0.120 4.120 20 C -0.058 4.058 21 O -0.560 6.560 22 Si 0.749 3.251 23 C -0.029 4.029 24 C -0.189 4.189 25 C -0.127 4.127 26 H 0.149 0.851 27 H 0.129 0.871 28 H 0.156 0.844 29 H 0.102 0.898 30 H 0.115 0.885 31 H 0.425 0.575 32 H 0.137 0.863 33 H 0.132 0.868 34 H 0.121 0.879 35 H 0.109 0.891 36 H 0.405 0.595 37 H -0.302 1.302 38 H -0.291 1.291 39 H 0.169 0.831 40 H 0.184 0.816 41 H 0.107 0.893 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.550 -11.912 -0.126 14.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.794 4.794 2 S 2.607 3.393 3 O -0.982 6.982 4 O -0.984 6.984 5 C -0.693 4.693 6 H 0.211 0.789 7 C -0.158 4.158 8 C 0.019 3.981 9 H 0.107 0.893 10 N -0.344 5.344 11 C 0.302 3.698 12 O -0.442 6.442 13 C -0.046 4.046 14 O -0.217 6.217 15 C 0.104 3.896 16 C -0.223 4.223 17 Br 0.034 6.966 18 C -0.096 4.096 19 C -0.122 4.122 20 C -0.170 4.170 21 O -0.371 6.371 22 Si 0.657 3.343 23 C -0.047 4.047 24 C -0.208 4.208 25 C -0.166 4.166 26 H 0.168 0.832 27 H 0.147 0.853 28 H 0.174 0.826 29 H 0.120 0.880 30 H 0.133 0.867 31 H 0.264 0.736 32 H 0.155 0.845 33 H 0.149 0.851 34 H 0.138 0.862 35 H 0.127 0.873 36 H 0.257 0.743 37 H -0.231 1.231 38 H -0.218 1.218 39 H 0.186 0.814 40 H 0.201 0.799 41 H 0.126 0.874 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.161 -8.884 -0.250 10.815 hybrid contribution -0.509 -0.246 -0.154 0.586 sum -6.670 -9.130 -0.404 11.314 Atomic orbital electron populations 1.30096 1.22429 1.13918 1.12922 1.07558 0.79870 0.74410 0.77481 1.93560 1.80998 1.36468 1.87135 1.93554 1.80968 1.67630 1.56290 1.31705 1.06790 1.13425 1.17402 0.78871 1.23077 0.91961 1.05879 0.94858 1.21657 0.97703 0.88758 0.90029 0.89282 1.45235 1.70462 1.14498 1.04226 1.20482 0.76561 0.89393 0.83354 1.90813 1.47352 1.31028 1.75031 1.22901 1.06869 0.96268 0.78593 1.86238 1.84369 1.35475 1.15602 1.18718 0.94716 0.88939 0.87235 1.21081 1.14315 0.93417 0.93506 1.96750 1.91256 1.17661 1.90940 1.20766 0.98092 0.93010 0.97733 1.19607 1.03557 0.92716 0.96272 1.24455 0.95759 0.91756 1.04985 1.86434 1.53464 1.35366 1.61793 0.94692 0.76397 0.83255 0.79934 1.21327 0.92586 1.00332 0.90445 1.21727 1.05584 0.90295 1.03182 1.23301 1.00623 0.98636 0.94085 0.83237 0.85262 0.82597 0.88009 0.86706 0.73643 0.84537 0.85060 0.86197 0.87301 0.74291 1.23069 1.21849 0.81354 0.79865 0.87426 0.87462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 7.30 10.62 113.37 1.20 8.51 16 2 S 2.42 -9.83 5.30 -56.49 -0.30 -10.13 16 3 O -0.98 -5.26 17.35 -127.37 -2.21 -7.47 16 4 O -0.99 -4.87 18.10 -127.37 -2.30 -7.18 16 5 C -0.58 6.44 4.05 31.18 0.13 6.57 16 6 H 0.19 -3.79 8.14 -2.39 -0.02 -3.81 16 7 C -0.12 0.92 7.41 31.12 0.23 1.15 16 8 C 0.13 -0.63 4.29 45.52 0.20 -0.44 16 9 H 0.09 0.09 7.50 -2.39 -0.02 0.08 16 10 N -0.69 5.88 5.26 -440.03 -2.32 3.56 16 11 C 0.52 -0.33 7.91 87.66 0.69 0.36 16 12 O -0.57 -6.86 16.12 15.99 0.26 -6.60 16 13 C 0.03 -0.20 5.22 71.24 0.37 0.17 16 14 O -0.30 -1.42 9.00 -73.54 -0.66 -2.08 16 15 C 0.15 0.55 6.68 22.52 0.15 0.70 16 16 C -0.14 -1.22 6.24 22.40 0.14 -1.08 16 17 Br -0.05 -0.60 33.16 -20.37 -0.68 -1.28 16 18 C -0.08 -0.53 8.40 22.27 0.19 -0.34 16 19 C -0.12 -0.19 5.38 -19.85 -0.11 -0.29 16 20 C -0.06 0.22 2.79 71.24 0.20 0.42 16 21 O -0.56 2.29 12.81 -148.98 -1.91 0.38 16 22 Si 0.75 -1.33 29.85 68.60 2.05 0.71 16 23 C -0.03 0.09 9.68 22.26 0.22 0.31 16 24 C -0.19 0.79 9.04 22.36 0.20 0.99 16 25 C -0.13 1.01 7.44 31.18 0.23 1.25 16 26 H 0.15 -2.23 8.14 -2.39 -0.02 -2.25 16 27 H 0.13 -1.30 8.14 -2.39 -0.02 -1.32 16 28 H 0.16 -2.59 8.14 -2.39 -0.02 -2.61 16 29 H 0.10 -0.55 8.10 -2.39 -0.02 -0.57 16 30 H 0.11 -1.30 8.14 -2.39 -0.02 -1.32 16 31 H 0.42 -7.31 8.71 -92.70 -0.81 -8.12 16 32 H 0.14 -1.97 7.66 -2.38 -0.02 -1.99 16 33 H 0.13 -1.73 7.66 -2.39 -0.02 -1.75 16 34 H 0.12 0.99 4.86 -2.91 -0.01 0.98 16 35 H 0.11 -1.04 7.96 -2.39 -0.02 -1.06 16 36 H 0.41 -5.75 8.74 -74.05 -0.65 -6.40 16 37 H -0.30 -2.18 7.05 99.48 0.70 -1.48 16 38 H -0.29 -1.33 7.11 99.48 0.71 -0.62 16 39 H 0.17 -1.53 8.06 -2.91 -0.02 -1.55 16 40 H 0.18 -2.48 6.30 -2.91 -0.02 -2.50 16 41 H 0.11 -1.17 8.14 -2.39 -0.02 -1.19 16 42 H 0.11 -0.61 7.49 -2.39 -0.02 -0.63 16 Total: 0.00 -45.56 388.16 -4.36 -49.92 By element: Atomic # 1 Polarization: -37.79 SS G_CDS: -0.33 Total: -38.12 kcal Atomic # 6 Polarization: 14.24 SS G_CDS: 4.04 Total: 18.28 kcal Atomic # 7 Polarization: 5.88 SS G_CDS: -2.32 Total: 3.56 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -6.83 Total: -22.95 kcal Atomic # 14 Polarization: -1.33 SS G_CDS: 2.05 Total: 0.71 kcal Atomic # 16 Polarization: -9.83 SS G_CDS: -0.30 Total: -10.13 kcal Atomic # 35 Polarization: -0.60 SS G_CDS: -0.68 Total: -1.28 kcal Total: -45.56 -4.36 -49.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12912156_6201210.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.682 kcal (2) G-P(sol) polarization free energy of solvation -45.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds