Wall clock time and date at job start Tue Mar 9 2021 13:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42104 * 108.58255 * 2 1 4 4 O 1.42108 * 108.57695 * 228.97579 * 2 1 3 5 5 C 1.81403 * 101.92393 * 114.49134 * 2 1 3 6 6 H 1.08997 * 112.90381 * 311.24935 * 5 2 1 7 7 C 1.53777 * 113.61378 * 82.49730 * 5 2 1 8 8 C 1.53782 * 87.08001 * 139.98367 * 7 5 2 9 9 H 1.08999 * 113.68864 * 220.00753 * 8 7 5 10 10 N 1.46496 * 113.61293 * 89.11960 * 8 7 5 11 11 C 1.34777 * 120.00266 * 107.50556 * 10 8 7 12 12 O 1.21274 * 120.00135 * 0.27234 * 11 10 8 13 13 C 1.50706 * 119.99766 * 179.97438 * 11 10 8 14 14 N 1.46500 * 109.46949 * 179.97438 * 13 11 10 15 15 C 1.36834 * 125.06163 * 264.70247 * 14 13 11 16 16 C 1.34242 * 109.93515 * 179.81283 * 15 14 13 17 17 C 1.50702 * 126.49676 * 180.16084 * 16 15 14 18 18 O 1.42906 * 109.46673 * 105.31465 * 17 16 15 19 19 Si 1.86298 * 109.47405 * 345.31958 * 17 16 15 20 20 C 1.46484 * 106.99899 * 0.43181 * 16 15 14 21 21 C 1.39595 * 134.03542 * 179.76367 * 20 16 15 22 22 C 1.36654 * 119.76611 * 179.97438 * 21 20 16 23 23 C 1.38790 * 120.52695 * 0.02562 * 22 21 20 24 24 C 1.37788 * 120.66998 * 359.97438 * 23 22 21 25 25 C 1.37688 * 125.06376 * 84.99942 * 14 13 11 26 26 C 1.53772 * 113.61682 * 179.97438 * 5 2 1 27 27 H 1.09001 * 109.46781 * 305.51356 * 1 2 3 28 28 H 1.09000 * 109.47009 * 65.50568 * 1 2 3 29 29 H 1.08996 * 109.47330 * 185.51469 * 1 2 3 30 30 H 1.09006 * 113.61677 * 25.43930 * 7 5 2 31 31 H 1.09003 * 113.61817 * 254.53087 * 7 5 2 32 32 H 0.96999 * 119.99691 * 287.49542 * 10 8 7 33 33 H 1.09000 * 109.47161 * 299.99737 * 13 11 10 34 34 H 1.09001 * 109.46740 * 59.99879 * 13 11 10 35 35 H 1.07998 * 125.03369 * 359.95307 * 15 14 13 36 36 H 1.08996 * 109.47124 * 225.31252 * 17 16 15 37 37 H 0.96703 * 113.99683 * 179.97438 * 18 17 16 38 38 H 1.48501 * 109.99915 * 298.67928 * 19 17 16 39 39 H 1.48501 * 110.00162 * 59.99815 * 19 17 16 40 40 H 1.08000 * 120.11528 * 359.97438 * 21 20 16 41 41 H 1.07999 * 119.73677 * 179.97438 * 22 21 20 42 42 H 1.08006 * 119.66445 * 179.97438 * 23 22 21 43 43 H 1.07990 * 120.11474 * 179.97438 * 24 23 22 44 44 H 1.09001 * 113.61879 * 105.47042 * 26 5 2 45 45 H 1.09005 * 113.61783 * 334.56564 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3470 0.0000 4 8 2.2667 -0.8842 -1.0163 5 6 2.1888 -0.7358 1.6152 6 1 1.6287 -0.2776 2.4303 7 6 2.1360 -2.2726 1.6191 8 6 3.3796 -2.2346 2.5231 9 1 4.1165 -3.0022 2.2867 10 7 3.0644 -2.1696 3.9522 11 6 3.2598 -3.2490 4.7353 12 8 3.7013 -4.2726 4.2577 13 6 2.9361 -3.1818 6.2056 14 7 3.2332 -4.4731 6.8305 15 6 2.3219 -5.4713 7.0439 16 6 2.9205 -6.5197 7.6311 17 6 2.2668 -7.8179 8.0290 18 8 2.6477 -8.8441 7.1102 19 14 0.4151 -7.6151 8.0005 20 6 4.3282 -6.1598 7.8178 21 6 5.4328 -6.8147 8.3651 22 6 6.6478 -6.1897 8.3911 23 6 6.7925 -4.9082 7.8782 24 6 5.7155 -4.2435 7.3334 25 6 4.4697 -4.8608 7.2958 26 6 3.6946 -0.8656 1.8985 27 1 -0.3633 0.5970 0.8365 28 1 -0.3633 0.4261 -0.9352 29 1 -0.3634 -1.0229 0.0988 30 1 2.3203 -2.7184 0.6416 31 1 1.2514 -2.6780 2.1103 32 1 2.7151 -1.3496 4.3350 33 1 3.5379 -2.4036 6.6750 34 1 1.8786 -2.9509 6.3346 35 1 1.2765 -5.4238 6.7773 36 1 2.5869 -8.0929 9.0339 37 1 2.2631 -9.7095 7.3057 38 1 0.0033 -6.5728 8.9748 39 1 -0.0339 -7.2402 6.6356 40 1 5.3276 -7.8118 8.7665 41 1 7.5020 -6.6966 8.8151 42 1 7.7591 -4.4272 7.9063 43 1 5.8382 -3.2464 6.9371 44 1 4.0687 -0.1346 2.6154 45 1 4.3049 -0.9268 0.9974 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12912156_9818708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:32:26 Heat of formation + Delta-G solvation = -32.100157 kcal Electronic energy + Delta-G solvation = -30370.823417 eV Core-core repulsion = 26063.384930 eV Total energy + Delta-G solvation = -4307.438487 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 365.118 amu Computer time = 2.44 seconds Orbital eigenvalues (eV) -42.65463 -41.31594 -39.48720 -38.11006 -38.04247 -37.59648 -37.09822 -34.72331 -34.10621 -31.53470 -30.45182 -30.37331 -29.21943 -26.99067 -26.88948 -25.58143 -23.88258 -22.94850 -21.92390 -21.15546 -20.61621 -19.75249 -18.93046 -18.32659 -18.24994 -17.95953 -17.76944 -17.18239 -17.01601 -16.84666 -16.53338 -16.41662 -15.92825 -15.63109 -15.28215 -14.97244 -14.92733 -14.82384 -14.51677 -14.31938 -14.18773 -14.08969 -13.95530 -13.92691 -13.71134 -13.61691 -13.33342 -13.18840 -13.07618 -12.76812 -12.65873 -12.51980 -12.16925 -12.07472 -12.03938 -11.87243 -11.81271 -11.32655 -11.12201 -10.64832 -10.32775 -10.17210 -9.26486 -8.73969 -4.94496 -0.97914 0.03662 0.55827 1.22432 1.29448 1.34225 1.56369 1.70885 1.77777 1.98158 2.01050 2.53666 2.80797 2.87018 3.13637 3.36103 3.41255 3.48050 3.49280 3.61031 3.67306 3.81586 3.82883 3.97822 4.00217 4.05312 4.17464 4.19676 4.22435 4.34589 4.40004 4.46042 4.51097 4.54800 4.61181 4.64714 4.70814 4.76650 4.82837 4.86032 4.93880 5.06857 5.31726 5.43615 5.57896 5.64428 5.65668 6.04050 6.14430 6.34054 6.99218 7.00851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.641 4.641 2 S 2.421 3.579 3 O -0.986 6.986 4 O -0.984 6.984 5 C -0.583 4.583 6 H 0.194 0.806 7 C -0.127 4.127 8 C 0.124 3.876 9 H 0.085 0.915 10 N -0.690 5.690 11 C 0.494 3.506 12 O -0.569 6.569 13 C 0.087 3.913 14 N -0.468 5.468 15 C 0.054 3.946 16 C -0.181 4.181 17 C -0.053 4.053 18 O -0.571 6.571 19 Si 0.788 3.212 20 C -0.120 4.120 21 C -0.083 4.083 22 C -0.152 4.152 23 C -0.103 4.103 24 C -0.136 4.136 25 C 0.090 3.910 26 C -0.118 4.118 27 H 0.156 0.844 28 H 0.129 0.871 29 H 0.149 0.851 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.424 0.576 33 H 0.150 0.850 34 H 0.160 0.840 35 H 0.177 0.823 36 H 0.078 0.922 37 H 0.398 0.602 38 H -0.281 1.281 39 H -0.292 1.292 40 H 0.127 0.873 41 H 0.143 0.857 42 H 0.149 0.851 43 H 0.135 0.865 44 H 0.114 0.886 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.075 2.493 6.300 9.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.793 4.793 2 S 2.609 3.391 3 O -0.983 6.983 4 O -0.981 6.981 5 C -0.693 4.693 6 H 0.211 0.789 7 C -0.166 4.166 8 C 0.017 3.983 9 H 0.103 0.897 10 N -0.344 5.344 11 C 0.280 3.720 12 O -0.446 6.446 13 C -0.038 4.038 14 N -0.151 5.151 15 C -0.071 4.071 16 C -0.188 4.188 17 C -0.162 4.162 18 O -0.381 6.381 19 Si 0.692 3.308 20 C -0.124 4.124 21 C -0.101 4.101 22 C -0.170 4.170 23 C -0.122 4.122 24 C -0.156 4.156 25 C -0.015 4.015 26 C -0.156 4.156 27 H 0.174 0.826 28 H 0.148 0.852 29 H 0.167 0.833 30 H 0.124 0.876 31 H 0.123 0.877 32 H 0.263 0.737 33 H 0.168 0.832 34 H 0.178 0.822 35 H 0.194 0.806 36 H 0.096 0.904 37 H 0.249 0.751 38 H -0.207 1.207 39 H -0.219 1.219 40 H 0.145 0.855 41 H 0.161 0.839 42 H 0.167 0.833 43 H 0.152 0.848 44 H 0.132 0.868 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.586 3.419 4.728 8.799 hybrid contribution 0.056 0.303 0.244 0.393 sum -6.530 3.722 4.972 9.012 Atomic orbital electron populations 1.30096 1.22387 1.13624 1.13216 1.07506 0.79855 0.74041 0.77712 1.93557 1.80975 1.36468 1.87320 1.93561 1.81013 1.67718 1.55817 1.31673 1.06926 1.07818 1.22905 0.78877 1.23246 1.00669 0.90470 1.02231 1.21643 0.97735 0.98434 0.80514 0.89665 1.45383 1.66165 1.15223 1.07643 1.21442 0.77390 0.83411 0.89806 1.90831 1.45366 1.32390 1.76052 1.22003 1.07927 0.84872 0.88950 1.43363 1.06326 1.14722 1.50666 1.21724 0.95513 0.88771 1.01109 1.20057 0.92776 0.96401 1.09593 1.24367 1.11565 0.85872 0.94426 1.86516 1.75899 1.21962 1.53678 0.94055 0.72613 0.86960 0.77178 1.19373 0.94206 0.94513 1.04338 1.20498 0.91558 0.99697 0.98379 1.20978 0.97600 0.96002 1.02465 1.21198 0.98726 0.94952 0.97342 1.20265 0.89634 1.01180 1.04553 1.18471 0.87372 0.95201 1.00478 1.23050 0.91773 0.97667 1.03151 0.82617 0.85210 0.83253 0.87609 0.87658 0.73719 0.83235 0.82238 0.80569 0.90405 0.75148 1.20734 1.21936 0.85486 0.83931 0.83288 0.84761 0.86759 0.88183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 7.17 10.62 113.37 1.20 8.38 16 2 S 2.42 -9.09 5.34 -56.49 -0.30 -9.39 16 3 O -0.99 -5.14 18.10 -127.37 -2.31 -7.44 16 4 O -0.98 -5.60 17.19 -127.37 -2.19 -7.78 16 5 C -0.58 6.07 4.05 31.12 0.13 6.20 16 6 H 0.19 -3.70 8.14 -2.39 -0.02 -3.72 16 7 C -0.13 0.87 7.42 31.12 0.23 1.10 16 8 C 0.12 -0.50 4.32 45.50 0.20 -0.30 16 9 H 0.09 0.23 7.46 -2.39 -0.02 0.21 16 10 N -0.69 5.31 5.26 -440.11 -2.32 2.99 16 11 C 0.49 -0.02 7.90 87.66 0.69 0.67 16 12 O -0.57 -7.35 16.02 -3.01 -0.05 -7.40 16 13 C 0.09 -0.47 6.48 85.63 0.56 0.09 16 14 N -0.47 -2.42 2.27 -519.98 -1.18 -3.60 16 15 C 0.05 0.38 9.89 83.00 0.82 1.20 16 16 C -0.18 -1.79 5.61 -18.63 -0.10 -1.90 16 17 C -0.05 -0.20 3.05 71.24 0.22 0.02 16 18 O -0.57 -3.07 12.86 -148.98 -1.92 -4.99 16 19 Si 0.79 -1.35 30.78 68.60 2.11 0.76 16 20 C -0.12 -1.47 6.35 -20.20 -0.13 -1.59 16 21 C -0.08 -0.81 10.05 22.23 0.22 -0.58 16 22 C -0.15 -0.97 9.97 22.03 0.22 -0.75 16 23 C -0.10 -0.53 10.01 22.30 0.22 -0.30 16 24 C -0.14 -0.86 10.00 22.37 0.22 -0.63 16 25 C 0.09 0.86 6.80 39.03 0.27 1.13 16 26 C -0.12 0.81 7.41 31.10 0.23 1.04 16 27 H 0.16 -2.55 8.14 -2.39 -0.02 -2.57 16 28 H 0.13 -1.29 8.14 -2.39 -0.02 -1.31 16 29 H 0.15 -2.19 8.14 -2.39 -0.02 -2.21 16 30 H 0.11 -0.43 7.36 -2.38 -0.02 -0.45 16 31 H 0.10 -1.02 8.14 -2.39 -0.02 -1.04 16 32 H 0.42 -6.87 8.70 -92.71 -0.81 -7.68 16 33 H 0.15 -1.71 8.14 -2.39 -0.02 -1.72 16 34 H 0.16 -2.14 8.11 -2.39 -0.02 -2.16 16 35 H 0.18 0.41 6.30 -2.91 -0.02 0.39 16 36 H 0.08 0.07 7.96 -2.39 -0.02 0.05 16 37 H 0.40 -2.45 8.74 -74.06 -0.65 -3.10 16 38 H -0.28 -0.61 7.11 99.48 0.71 0.10 16 39 H -0.29 -1.26 7.05 99.48 0.70 -0.56 16 40 H 0.13 0.91 8.06 -2.91 -0.02 0.88 16 41 H 0.14 0.21 8.06 -2.91 -0.02 0.18 16 42 H 0.15 -0.07 8.06 -2.91 -0.02 -0.10 16 43 H 0.13 0.15 8.06 -2.92 -0.02 0.13 16 44 H 0.11 -1.20 8.14 -2.39 -0.02 -1.22 16 45 H 0.10 -0.46 8.10 -2.38 -0.02 -0.48 16 Total: 0.00 -46.13 393.87 -3.33 -49.47 By element: Atomic # 1 Polarization: -25.98 SS G_CDS: -0.39 Total: -26.37 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: 5.20 Total: 13.76 kcal Atomic # 7 Polarization: 2.89 SS G_CDS: -3.50 Total: -0.61 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -6.46 Total: -27.62 kcal Atomic # 14 Polarization: -1.35 SS G_CDS: 2.11 Total: 0.76 kcal Atomic # 16 Polarization: -9.09 SS G_CDS: -0.30 Total: -9.39 kcal Total: -46.13 -3.33 -49.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12912156_9818708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.366 kcal (2) G-P(sol) polarization free energy of solvation -46.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.44 seconds