Wall clock time and date at job start Tue Mar 9 2021 13:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86303 * 109.46985 * 2 1 4 4 C 1.50694 * 109.47336 * 120.00386 * 2 1 3 5 5 C 1.34239 * 126.49833 * 255.35630 * 4 2 1 6 6 N 1.36828 * 109.94074 * 180.13686 * 5 4 2 7 7 C 1.46499 * 125.06723 * 179.81576 * 6 5 4 8 8 C 1.50705 * 109.47104 * 264.69407 * 7 6 5 9 9 O 1.21283 * 119.99691 * 359.97438 * 8 7 6 10 10 N 1.34768 * 120.00217 * 179.97438 * 8 7 6 11 11 C 1.46498 * 120.00221 * 179.97438 * 10 8 7 12 12 H 1.08994 * 112.84923 * 336.19839 * 11 10 8 13 13 C 1.53789 * 113.61404 * 107.50091 * 11 10 8 14 14 C 1.53787 * 87.07916 * 89.11935 * 13 11 10 15 15 H 1.09003 * 113.68991 * 270.87343 * 14 13 11 16 16 C 1.52997 * 113.61418 * 139.98375 * 14 13 11 17 17 O 1.42898 * 109.47319 * 87.50225 * 16 14 13 18 18 C 1.53780 * 87.08169 * 25.42984 * 14 13 11 19 19 C 1.37701 * 109.87321 * 359.54519 * 6 5 4 20 20 C 1.39080 * 133.51600 * 180.28615 * 19 6 5 21 21 C 1.37790 * 119.77689 * 179.97438 * 20 19 6 22 22 C 1.38788 * 120.66667 * 359.97315 * 21 20 19 23 23 C 1.36654 * 120.52996 * 0.02562 * 22 21 20 24 24 C 1.39593 * 119.76388 * 0.03950 * 23 22 21 25 25 H 0.96703 * 114.00119 * 299.99753 * 1 2 3 26 26 H 1.09001 * 109.46607 * 240.00376 * 2 1 3 27 27 H 1.48500 * 109.99878 * 178.68742 * 3 2 1 28 28 H 1.48499 * 109.99965 * 299.99933 * 3 2 1 29 29 H 1.08001 * 125.02803 * 359.96342 * 5 4 2 30 30 H 1.09001 * 109.47385 * 144.69197 * 7 6 5 31 31 H 1.08999 * 109.47162 * 24.68749 * 7 6 5 32 32 H 0.97002 * 120.00057 * 359.97438 * 10 8 7 33 33 H 1.08998 * 113.61490 * 334.57116 * 13 11 10 34 34 H 1.08992 * 113.61318 * 203.66712 * 13 11 10 35 35 H 1.09002 * 109.47153 * 327.49917 * 16 14 13 36 36 H 1.09001 * 109.46832 * 207.50108 * 16 14 13 37 37 H 0.96701 * 113.99881 * 180.02562 * 17 16 14 38 38 H 1.09004 * 113.61169 * 89.11732 * 18 14 13 39 39 H 1.09003 * 113.61760 * 220.01517 * 18 14 13 40 40 H 1.08000 * 120.11119 * 359.95446 * 20 19 6 41 41 H 1.08003 * 119.66690 * 180.02562 * 21 20 19 42 42 H 1.07999 * 119.73397 * 180.02562 * 22 21 20 43 43 H 1.08002 * 120.12124 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7105 1.2303 5 6 2.4547 -0.1373 2.3256 6 7 2.8018 -1.0989 3.2349 7 6 3.4058 -0.8403 4.5443 8 6 4.9042 -0.9624 4.4393 9 8 5.4170 -1.2388 3.3755 10 7 5.6744 -0.7646 5.5274 11 6 7.1309 -0.8839 5.4255 12 1 7.4469 -1.5117 4.5924 13 6 7.8660 0.4651 5.4960 14 6 7.9039 0.2754 7.0216 15 1 7.0321 0.6808 7.5352 16 6 9.2247 0.7091 7.6605 17 8 9.1678 2.1023 7.9733 18 6 7.8148 -1.2368 6.7569 19 6 2.4933 -2.3457 2.7385 20 6 2.6279 -3.6361 3.2396 21 6 2.2142 -4.7107 2.4827 22 6 1.6630 -4.5192 1.2234 23 6 1.5214 -3.2600 0.7118 24 6 1.9351 -2.1571 1.4608 25 1 -0.3933 0.4417 0.7651 26 1 1.7922 -0.5138 -0.8900 27 1 3.5346 1.7703 0.0320 28 1 1.5614 2.4679 -1.2085 29 1 2.5853 0.9255 2.4668 30 1 3.0319 -1.5659 5.2667 31 1 3.1455 0.1661 4.8722 32 1 5.2643 -0.5432 6.3782 33 1 7.2576 1.3111 5.1762 34 1 8.8509 0.4505 5.0296 35 1 10.0427 0.5263 6.9636 36 1 9.3912 0.1382 8.5740 37 1 9.9736 2.4469 8.3819 38 1 8.7860 -1.7167 6.6351 39 1 7.1652 -1.7648 7.4550 40 1 3.0555 -3.7954 4.2184 41 1 2.3191 -5.7120 2.8737 42 1 1.3434 -5.3722 0.6433 43 1 1.0920 -3.1187 -0.2691 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13270474_9818708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:09:14 Heat of formation + Delta-G solvation = -22.640397 kcal Electronic energy + Delta-G solvation = -26191.036066 eV Core-core repulsion = 22397.301490 eV Total energy + Delta-G solvation = -3793.734576 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.55152 -41.27729 -39.63311 -38.10513 -37.62035 -37.23119 -34.58313 -33.92053 -31.47763 -30.24473 -29.44738 -28.33209 -26.73780 -25.81987 -23.92421 -23.45452 -22.74376 -21.87571 -20.67781 -20.31535 -18.68159 -18.47919 -18.21295 -17.73299 -17.28960 -16.91343 -16.44783 -16.35439 -16.14433 -15.94708 -15.75876 -15.42496 -15.36264 -14.84838 -14.75040 -14.66737 -14.40507 -14.08141 -13.73230 -13.57648 -13.46075 -13.22774 -13.02823 -12.72158 -12.59822 -12.27678 -12.13687 -11.83337 -11.82452 -11.66680 -11.43779 -11.19160 -10.80311 -10.56711 -10.32124 -10.16582 -9.17109 -8.63970 -5.06857 0.12963 0.61871 1.32793 1.40560 1.41649 1.62807 1.74044 1.98482 2.16745 2.93331 3.20603 3.44962 3.55689 3.63537 3.64467 3.68335 3.74091 3.80830 3.87564 4.03908 4.10582 4.15187 4.20278 4.28629 4.38915 4.46911 4.54385 4.55261 4.62660 4.69896 4.70197 4.73286 4.77172 4.79947 4.87421 4.99220 5.08357 5.11983 5.17348 5.49154 5.53751 5.64559 5.72017 5.74046 6.18360 6.22111 6.45028 6.87268 6.88222 7.10967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.040 4.040 3 Si 0.800 3.200 4 C -0.225 4.225 5 C 0.079 3.921 6 N -0.467 5.467 7 C 0.089 3.911 8 C 0.492 3.508 9 O -0.574 6.574 10 N -0.694 5.694 11 C 0.113 3.887 12 H 0.078 0.922 13 C -0.146 4.146 14 C -0.105 4.105 15 H 0.100 0.900 16 C 0.079 3.921 17 O -0.597 6.597 18 C -0.123 4.123 19 C 0.091 3.909 20 C -0.133 4.133 21 C -0.108 4.108 22 C -0.154 4.154 23 C -0.091 4.091 24 C -0.118 4.118 25 H 0.393 0.607 26 H 0.088 0.912 27 H -0.297 1.297 28 H -0.296 1.296 29 H 0.207 0.793 30 H 0.146 0.854 31 H 0.168 0.832 32 H 0.421 0.579 33 H 0.060 0.940 34 H 0.087 0.913 35 H 0.051 0.949 36 H 0.060 0.940 37 H 0.396 0.604 38 H 0.104 0.896 39 H 0.093 0.907 40 H 0.134 0.866 41 H 0.146 0.854 42 H 0.136 0.864 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.955 2.248 10.784 11.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.367 6.367 2 C -0.150 4.150 3 Si 0.706 3.294 4 C -0.232 4.232 5 C -0.047 4.047 6 N -0.149 5.149 7 C -0.035 4.035 8 C 0.278 3.722 9 O -0.453 6.453 10 N -0.347 5.347 11 C 0.007 3.993 12 H 0.096 0.904 13 C -0.185 4.185 14 C -0.124 4.124 15 H 0.119 0.881 16 C 0.001 3.999 17 O -0.406 6.406 18 C -0.160 4.160 19 C -0.014 4.014 20 C -0.154 4.154 21 C -0.127 4.127 22 C -0.173 4.173 23 C -0.110 4.110 24 C -0.122 4.122 25 H 0.243 0.757 26 H 0.106 0.894 27 H -0.224 1.224 28 H -0.224 1.224 29 H 0.224 0.776 30 H 0.164 0.836 31 H 0.185 0.815 32 H 0.259 0.741 33 H 0.079 0.921 34 H 0.106 0.894 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.245 0.755 38 H 0.122 0.878 39 H 0.112 0.888 40 H 0.152 0.848 41 H 0.164 0.836 42 H 0.154 0.846 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.420 2.341 9.125 9.527 hybrid contribution 0.829 -0.662 -0.120 1.068 sum 2.249 1.679 9.004 9.431 Atomic orbital electron populations 1.86451 1.17683 1.82381 1.50209 1.24556 0.84741 1.10285 0.95373 0.94142 0.76624 0.73661 0.85003 1.20786 1.11995 0.91903 0.98523 1.22067 0.98838 0.95330 0.88438 1.43444 1.51863 1.03830 1.15786 1.22001 0.88129 1.09371 0.84012 1.21562 0.90794 0.76028 0.83805 1.90806 1.75834 1.48578 1.30043 1.45486 1.05946 1.70835 1.12434 1.21804 0.80039 0.97809 0.99608 0.90395 1.23474 1.00995 0.97272 0.96726 1.22575 0.98515 0.96253 0.95015 0.88147 1.22293 0.96957 0.81642 0.98990 1.86434 1.44601 1.25143 1.84416 1.23267 1.02142 0.95317 0.95321 1.18399 1.01550 0.87095 0.94405 1.20262 1.04548 0.89080 1.01474 1.21135 0.98218 0.99069 0.94305 1.20913 1.02360 0.96960 0.97029 1.20448 0.99291 0.91839 0.99405 1.19375 1.04053 0.93924 0.94886 0.75678 0.89421 1.22427 1.22411 0.77619 0.83610 0.81468 0.74128 0.92115 0.89442 0.93068 0.92229 0.75485 0.87760 0.88800 0.84798 0.83609 0.84617 0.86568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.61 12.88 -148.98 -1.92 -4.53 16 2 C -0.04 -0.20 3.06 71.23 0.22 0.02 16 3 Si 0.80 0.33 30.76 68.60 2.11 2.44 16 4 C -0.22 -1.45 5.57 -18.63 -0.10 -1.55 16 5 C 0.08 0.10 9.89 83.00 0.82 0.92 16 6 N -0.47 -0.91 2.27 -519.98 -1.18 -2.09 16 7 C 0.09 -0.63 6.48 85.63 0.56 -0.08 16 8 C 0.49 -0.02 7.90 87.66 0.69 0.67 16 9 O -0.57 -7.13 16.02 -3.04 -0.05 -7.18 16 10 N -0.69 3.95 5.26 -440.04 -2.32 1.64 16 11 C 0.11 -0.27 4.32 45.52 0.20 -0.07 16 12 H 0.08 0.28 7.46 -2.39 -0.02 0.26 16 13 C -0.15 0.25 7.43 31.13 0.23 0.49 16 14 C -0.11 0.55 3.89 -10.27 -0.04 0.51 16 15 H 0.10 -0.57 8.14 -2.39 -0.02 -0.59 16 16 C 0.08 -0.36 6.88 71.98 0.50 0.13 16 17 O -0.60 0.65 13.66 -148.98 -2.04 -1.38 16 18 C -0.12 0.90 7.39 31.12 0.23 1.13 16 19 C 0.09 0.71 6.80 39.03 0.27 0.98 16 20 C -0.13 -0.77 10.00 22.37 0.22 -0.54 16 21 C -0.11 -0.60 10.01 22.30 0.22 -0.38 16 22 C -0.15 -1.16 9.97 22.03 0.22 -0.94 16 23 C -0.09 -0.98 10.05 22.23 0.22 -0.76 16 24 C -0.12 -1.29 6.35 -20.20 -0.13 -1.42 16 25 H 0.39 -1.79 8.70 -74.06 -0.64 -2.43 16 26 H 0.09 0.75 7.96 -2.39 -0.02 0.73 16 27 H -0.30 -2.13 7.11 99.48 0.71 -1.42 16 28 H -0.30 -2.15 7.11 99.48 0.71 -1.45 16 29 H 0.21 -1.55 6.35 -2.91 -0.02 -1.57 16 30 H 0.15 -1.80 8.14 -2.39 -0.02 -1.82 16 31 H 0.17 -2.63 8.12 -2.39 -0.02 -2.65 16 32 H 0.42 -5.44 8.70 -92.71 -0.81 -6.25 16 33 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 34 H 0.09 -0.09 7.90 -2.39 -0.02 -0.11 16 35 H 0.05 -0.27 7.84 -2.39 -0.02 -0.29 16 36 H 0.06 -0.42 8.14 -2.39 -0.02 -0.44 16 37 H 0.40 -3.52 9.12 -74.06 -0.68 -4.20 16 38 H 0.10 -0.85 8.10 -2.38 -0.02 -0.86 16 39 H 0.09 -0.93 8.14 -2.39 -0.02 -0.95 16 40 H 0.13 0.09 8.06 -2.91 -0.02 0.06 16 41 H 0.15 0.03 8.06 -2.91 -0.02 0.01 16 42 H 0.14 0.47 8.06 -2.91 -0.02 0.44 16 43 H 0.12 1.17 8.06 -2.91 -0.02 1.15 16 Total: 0.00 -32.27 364.26 -2.10 -34.37 By element: Atomic # 1 Polarization: -21.33 SS G_CDS: -1.03 Total: -22.36 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: 4.32 Total: -0.90 kcal Atomic # 7 Polarization: 3.04 SS G_CDS: -3.50 Total: -0.45 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: -4.00 Total: -13.09 kcal Atomic # 14 Polarization: 0.33 SS G_CDS: 2.11 Total: 2.44 kcal Total: -32.27 -2.10 -34.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13270474_9818708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.728 kcal (2) G-P(sol) polarization free energy of solvation -32.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds