Wall clock time and date at job start Tue Mar 9 2021 13:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42892 * 1 3 3 Si 1.86299 * 109.46977 * 2 1 4 4 C 1.50701 * 109.47439 * 239.99713 * 2 1 3 5 5 C 1.34234 * 126.49531 * 104.97773 * 4 2 1 6 6 N 1.36839 * 109.93965 * 180.02562 * 5 4 2 7 7 C 1.46493 * 125.06630 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.47561 * 264.97819 * 7 6 5 9 9 O 1.21279 * 119.99731 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00066 * 180.02562 * 8 7 6 11 11 C 1.46502 * 119.99629 * 180.02562 * 10 8 7 12 12 H 1.08994 * 112.85092 * 336.19167 * 11 10 8 13 13 C 1.53780 * 113.61394 * 107.50227 * 11 10 8 14 14 C 1.53782 * 87.08209 * 139.97731 * 13 11 10 15 15 C 1.52997 * 113.69306 * 89.12237 * 14 13 11 16 16 O 1.42908 * 109.46668 * 82.46488 * 15 14 13 17 17 C 1.50702 * 113.61545 * 220.01796 * 14 13 11 18 18 C 1.38229 * 120.00044 * 331.52632 * 17 14 13 19 19 C 1.38237 * 120.00187 * 179.76710 * 18 17 14 20 20 C 1.38242 * 119.99632 * 0.50311 * 19 18 17 21 21 C 1.38234 * 119.99754 * 359.74593 * 20 19 18 22 22 C 1.38227 * 120.00508 * 0.02562 * 21 20 19 23 23 C 1.53784 * 87.08240 * 334.56669 * 14 13 11 24 24 C 1.37700 * 109.86882 * 0.02562 * 6 5 4 25 25 C 1.39078 * 133.50923 * 179.97438 * 24 6 5 26 26 C 1.37797 * 119.77423 * 180.02562 * 25 24 6 27 27 C 1.38785 * 120.66559 * 359.97438 * 26 25 24 28 28 C 1.36659 * 120.53187 * 0.02562 * 27 26 25 29 29 C 1.39588 * 119.76049 * 359.97438 * 28 27 26 30 30 H 0.96695 * 114.00597 * 299.99893 * 1 2 3 31 31 H 1.09008 * 109.47035 * 119.99780 * 2 1 3 32 32 H 1.48499 * 110.00070 * 178.67443 * 3 2 1 33 33 H 1.48497 * 110.00385 * 299.99921 * 3 2 1 34 34 H 1.08004 * 125.03837 * 0.02562 * 5 4 2 35 35 H 1.09001 * 109.47330 * 24.97960 * 7 6 5 36 36 H 1.09003 * 109.46765 * 144.97683 * 7 6 5 37 37 H 0.96997 * 120.00400 * 359.97438 * 10 8 7 38 38 H 1.08995 * 113.61707 * 254.52642 * 13 11 10 39 39 H 1.08997 * 113.61436 * 25.43025 * 13 11 10 40 40 H 1.08999 * 109.47429 * 202.46318 * 15 14 13 41 41 H 1.08994 * 109.47417 * 322.47216 * 15 14 13 42 42 H 0.96705 * 113.99910 * 180.02562 * 16 15 14 43 43 H 1.08004 * 119.99889 * 359.97438 * 18 17 14 44 44 H 1.07995 * 120.00355 * 180.22766 * 19 18 17 45 45 H 1.07995 * 119.99837 * 179.72861 * 20 19 18 46 46 H 1.08003 * 119.99408 * 179.97438 * 21 20 19 47 47 H 1.07998 * 120.00444 * 179.97438 * 22 21 20 48 48 H 1.09002 * 113.61653 * 270.88976 * 23 14 13 49 49 H 1.08999 * 113.69342 * 139.98780 * 23 14 13 50 50 H 1.07991 * 120.11615 * 0.03565 * 25 24 6 51 51 H 1.07994 * 119.66277 * 179.97438 * 26 25 24 52 52 H 1.08005 * 119.73511 * 180.02562 * 27 26 25 53 53 H 1.07993 * 120.12101 * 180.27022 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 2.4604 -0.1376 -2.3230 6 7 2.8022 -1.0989 -3.2349 7 6 3.4070 -0.8403 -4.5438 8 6 2.3275 -0.7839 -5.5938 9 8 1.1670 -0.9435 -5.2795 10 7 2.6516 -0.5560 -6.8820 11 6 1.6020 -0.5007 -7.9026 12 1 0.7017 -1.0430 -7.6137 13 6 1.3269 0.9186 -8.4269 14 6 1.1924 0.2913 -9.8246 15 6 -0.2290 -0.1651 -10.1594 16 8 -0.9919 0.9522 -10.6200 17 6 1.8148 1.1183 -10.9199 18 6 1.8954 2.4919 -10.7879 19 6 2.4707 3.2500 -11.7905 20 6 2.9560 2.6354 -12.9298 21 6 2.8707 1.2622 -13.0639 22 6 2.2997 0.5037 -12.0593 23 6 2.0996 -0.8420 -9.3171 24 6 2.4929 -2.3456 -2.7388 25 6 2.6271 -3.6360 -3.2400 26 6 2.2127 -4.7105 -2.4835 27 6 1.6620 -4.5191 -1.2240 28 6 1.5208 -3.2599 -0.7121 29 6 1.9340 -2.1570 -1.4613 30 1 -0.3934 0.4416 0.7650 31 1 1.7923 -0.5138 0.8901 32 1 3.5344 1.7703 0.0323 33 1 1.5614 2.4679 -1.2084 34 1 2.5964 0.9248 -2.4619 35 1 3.9379 0.1113 -4.5172 36 1 4.1070 -1.6403 -4.7850 37 1 3.5796 -0.4280 -7.1333 38 1 0.3995 1.3508 -8.0513 39 1 2.1784 1.5922 -8.3309 40 1 -0.1923 -0.9260 -10.9389 41 1 -0.6967 -0.5812 -9.2672 42 1 -1.9058 0.7361 -10.8508 43 1 1.5120 2.9725 -9.9000 44 1 2.5370 4.3228 -11.6858 45 1 3.4014 3.2281 -13.7150 46 1 3.2494 0.7822 -13.9542 47 1 2.2327 -0.5691 -12.1643 48 1 3.1624 -0.6496 -9.4643 49 1 1.7972 -1.8317 -9.6593 50 1 3.0549 -3.7953 -4.2187 51 1 2.3174 -5.7117 -2.8747 52 1 1.3426 -5.3722 -0.6438 53 1 1.0955 -3.1189 0.2705 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13270510_9818708.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:13:37 Heat of formation + Delta-G solvation = 13.332603 kcal Electronic energy + Delta-G solvation = -36079.672998 eV Core-core repulsion = 31463.518529 eV Total energy + Delta-G solvation = -4616.154469 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 393.177 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -42.65960 -41.87579 -40.45522 -39.03970 -38.11335 -37.63317 -37.23425 -34.97381 -34.22270 -31.99193 -31.83456 -31.37675 -30.37550 -29.26122 -28.09501 -27.02731 -25.87547 -24.75306 -23.86935 -23.20257 -23.03966 -22.28280 -21.73822 -20.63853 -19.83265 -18.66457 -18.53419 -18.33061 -18.22775 -17.94601 -17.75418 -17.03924 -16.54816 -16.44780 -16.23313 -16.03478 -15.85350 -15.66541 -15.51871 -15.38198 -15.03396 -14.89012 -14.81364 -14.55414 -14.40072 -14.30832 -14.19066 -13.78641 -13.64970 -13.57960 -13.47629 -13.34410 -13.10328 -12.77303 -12.65984 -12.53631 -12.50962 -12.32684 -12.14448 -12.05992 -11.81286 -11.57775 -11.41184 -11.24733 -10.89815 -10.64224 -10.22784 -10.18460 -9.81826 -9.60543 -9.26400 -8.74108 -4.97157 0.03712 0.45168 0.50090 0.56607 1.23932 1.31384 1.32780 1.56827 1.68929 1.97440 2.08736 2.85592 2.87729 2.97674 3.22942 3.43690 3.47845 3.53605 3.60048 3.64669 3.67422 3.80920 3.82709 3.96959 3.97383 3.99232 4.12902 4.14534 4.17729 4.22303 4.27309 4.33390 4.34354 4.42780 4.47592 4.51499 4.60280 4.61002 4.62970 4.70495 4.71193 4.71374 4.83178 4.89862 4.91871 4.98046 5.06870 5.13604 5.15008 5.37291 5.43966 5.58217 5.58527 5.63090 5.65016 5.65829 5.69367 6.03648 6.11205 6.15057 6.36009 6.79950 6.98560 7.02024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.571 6.571 2 C -0.051 4.051 3 Si 0.788 3.212 4 C -0.180 4.180 5 C 0.052 3.948 6 N -0.467 5.467 7 C 0.086 3.914 8 C 0.492 3.508 9 O -0.571 6.571 10 N -0.699 5.699 11 C 0.123 3.877 12 H 0.095 0.905 13 C -0.135 4.135 14 C -0.039 4.039 15 C 0.098 3.902 16 O -0.586 6.586 17 C -0.055 4.055 18 C -0.119 4.119 19 C -0.132 4.132 20 C -0.136 4.136 21 C -0.128 4.128 22 C -0.122 4.122 23 C -0.111 4.111 24 C 0.090 3.910 25 C -0.136 4.136 26 C -0.102 4.102 27 C -0.151 4.151 28 C -0.082 4.082 29 C -0.119 4.119 30 H 0.398 0.602 31 H 0.080 0.920 32 H -0.282 1.282 33 H -0.296 1.296 34 H 0.173 0.827 35 H 0.154 0.846 36 H 0.150 0.850 37 H 0.421 0.579 38 H 0.056 0.944 39 H 0.095 0.905 40 H 0.064 0.936 41 H 0.052 0.948 42 H 0.395 0.605 43 H 0.115 0.885 44 H 0.129 0.871 45 H 0.133 0.867 46 H 0.136 0.864 47 H 0.134 0.866 48 H 0.111 0.889 49 H 0.094 0.906 50 H 0.134 0.866 51 H 0.151 0.849 52 H 0.144 0.856 53 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.141 -0.167 -1.154 5.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.380 6.380 2 C -0.160 4.160 3 Si 0.692 3.308 4 C -0.188 4.188 5 C -0.074 4.074 6 N -0.150 5.150 7 C -0.039 4.039 8 C 0.278 3.722 9 O -0.449 6.449 10 N -0.352 5.352 11 C 0.017 3.983 12 H 0.113 0.887 13 C -0.174 4.174 14 C -0.040 4.040 15 C 0.020 3.980 16 O -0.393 6.393 17 C -0.056 4.056 18 C -0.138 4.138 19 C -0.150 4.150 20 C -0.154 4.154 21 C -0.145 4.145 22 C -0.140 4.140 23 C -0.149 4.149 24 C -0.015 4.015 25 C -0.156 4.156 26 C -0.121 4.121 27 C -0.170 4.170 28 C -0.100 4.100 29 C -0.123 4.123 30 H 0.249 0.751 31 H 0.098 0.902 32 H -0.208 1.208 33 H -0.223 1.223 34 H 0.190 0.810 35 H 0.171 0.829 36 H 0.168 0.832 37 H 0.259 0.741 38 H 0.075 0.925 39 H 0.114 0.886 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.244 0.756 43 H 0.133 0.867 44 H 0.147 0.853 45 H 0.151 0.849 46 H 0.154 0.846 47 H 0.152 0.848 48 H 0.129 0.871 49 H 0.112 0.888 50 H 0.152 0.848 51 H 0.168 0.832 52 H 0.162 0.838 53 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.594 0.374 -2.081 5.980 hybrid contribution -0.531 -0.443 -0.574 0.898 sum 5.063 -0.069 -2.655 5.717 Atomic orbital electron populations 1.86510 1.18173 1.82394 1.50929 1.24321 0.85065 1.10993 0.95602 0.94158 0.77449 0.74089 0.85129 1.20053 1.09078 0.91995 0.97647 1.21701 1.02048 0.94250 0.89381 1.43370 1.53546 1.03919 1.14183 1.21991 0.94067 1.08889 0.78923 1.21419 0.90349 0.75853 0.84618 1.90807 1.22325 1.50158 1.81658 1.45775 1.11636 1.71968 1.05784 1.22444 0.91979 0.97053 0.86795 0.88665 1.23520 1.02353 0.97136 0.94400 1.20533 0.94290 0.96754 0.92408 1.21987 0.89504 0.88089 0.98433 1.86474 1.28727 1.36049 1.88095 1.19441 0.97616 0.93382 0.95114 1.21081 0.99403 0.93858 0.99410 1.21369 0.98817 1.00523 0.94291 1.21412 1.00374 0.95438 0.98150 1.21406 0.99465 0.94202 0.99467 1.21153 0.98979 1.00616 0.93291 1.23382 1.00772 0.98640 0.92089 1.18496 1.01836 0.86890 0.94304 1.20271 1.05348 0.88805 1.01218 1.21199 0.97602 0.99003 0.94258 1.20983 1.01991 0.97068 0.96933 1.20496 0.98479 0.91327 0.99743 1.19353 1.04261 0.93456 0.95280 0.75123 0.90169 1.20841 1.22332 0.80997 0.82860 0.83194 0.74070 0.92511 0.88633 0.91802 0.92950 0.75570 0.86686 0.85338 0.84925 0.84571 0.84815 0.87063 0.88768 0.84770 0.83156 0.83812 0.85419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 -3.66 12.86 -148.98 -1.92 -5.58 16 2 C -0.05 -0.25 3.05 71.24 0.22 -0.04 16 3 Si 0.79 0.04 30.79 68.60 2.11 2.15 16 4 C -0.18 -2.06 5.61 -18.63 -0.10 -2.16 16 5 C 0.05 0.48 9.89 83.00 0.82 1.30 16 6 N -0.47 -3.42 2.27 -520.00 -1.18 -4.60 16 7 C 0.09 -0.21 6.48 85.63 0.56 0.35 16 8 C 0.49 1.47 7.90 87.66 0.69 2.17 16 9 O -0.57 -8.68 16.02 -3.03 -0.05 -8.73 16 10 N -0.70 2.67 5.35 -440.03 -2.36 0.31 16 11 C 0.12 -0.14 3.89 45.52 0.18 0.04 16 12 H 0.10 0.39 6.98 -2.39 -0.02 0.37 16 13 C -0.14 -0.06 5.98 31.12 0.19 0.12 16 14 C -0.04 0.04 0.89 -52.40 -0.05 -0.01 16 15 C 0.10 -0.05 6.39 71.98 0.46 0.41 16 16 O -0.59 -1.59 13.13 -148.98 -1.96 -3.54 16 17 C -0.06 -0.10 4.32 -19.87 -0.09 -0.19 16 18 C -0.12 -0.47 9.02 22.27 0.20 -0.27 16 19 C -0.13 -0.42 10.05 22.27 0.22 -0.19 16 20 C -0.14 -0.27 10.05 22.27 0.22 -0.04 16 21 C -0.13 -0.12 10.05 22.27 0.22 0.10 16 22 C -0.12 -0.07 9.39 22.27 0.21 0.14 16 23 C -0.11 0.61 6.63 31.12 0.21 0.81 16 24 C 0.09 0.97 6.80 39.03 0.27 1.24 16 25 C -0.14 -0.96 10.00 22.37 0.22 -0.73 16 26 C -0.10 -0.54 10.01 22.30 0.22 -0.32 16 27 C -0.15 -1.00 9.97 22.03 0.22 -0.78 16 28 C -0.08 -0.84 10.05 22.23 0.22 -0.61 16 29 C -0.12 -1.57 6.35 -20.20 -0.13 -1.70 16 30 H 0.40 -2.09 8.74 -74.06 -0.65 -2.74 16 31 H 0.08 0.14 7.96 -2.38 -0.02 0.12 16 32 H -0.28 -1.15 7.11 99.48 0.71 -0.44 16 33 H -0.30 -1.99 7.04 99.48 0.70 -1.29 16 34 H 0.17 0.93 6.30 -2.91 -0.02 0.91 16 35 H 0.15 -1.43 8.12 -2.39 -0.02 -1.45 16 36 H 0.15 -1.32 8.14 -2.39 -0.02 -1.34 16 37 H 0.42 -4.72 8.73 -92.71 -0.81 -5.52 16 38 H 0.06 0.29 8.10 -2.39 -0.02 0.27 16 39 H 0.10 -0.07 7.45 -2.39 -0.02 -0.08 16 40 H 0.06 -0.20 8.14 -2.39 -0.02 -0.22 16 41 H 0.05 -0.03 7.35 -2.39 -0.02 -0.05 16 42 H 0.39 -1.97 9.12 -74.05 -0.68 -2.65 16 43 H 0.12 0.44 7.03 -2.91 -0.02 0.42 16 44 H 0.13 0.05 8.06 -2.91 -0.02 0.02 16 45 H 0.13 -0.19 8.06 -2.91 -0.02 -0.21 16 46 H 0.14 -0.39 8.06 -2.91 -0.02 -0.41 16 47 H 0.13 -0.43 8.03 -2.91 -0.02 -0.46 16 48 H 0.11 -0.89 8.07 -2.39 -0.02 -0.91 16 49 H 0.09 -0.68 8.10 -2.39 -0.02 -0.70 16 50 H 0.13 0.25 8.06 -2.92 -0.02 0.23 16 51 H 0.15 -0.08 8.06 -2.91 -0.02 -0.10 16 52 H 0.14 0.21 8.06 -2.91 -0.02 0.19 16 53 H 0.13 0.95 8.06 -2.91 -0.02 0.93 16 Total: 0.00 -34.17 440.11 -1.30 -35.47 By element: Atomic # 1 Polarization: -13.99 SS G_CDS: -1.14 Total: -15.13 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: 5.19 Total: -0.36 kcal Atomic # 7 Polarization: -0.75 SS G_CDS: -3.54 Total: -4.29 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: -3.92 Total: -17.84 kcal Atomic # 14 Polarization: 0.04 SS G_CDS: 2.11 Total: 2.15 kcal Total: -34.17 -1.30 -35.47 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13270510_9818708.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.798 kcal (2) G-P(sol) polarization free energy of solvation -34.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds