Wall clock time and date at job start Tue Mar 9 2021 13:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.20767 * 120.00177 * 2 1 4 4 C 1.50703 * 120.00337 * 180.02562 * 2 1 3 5 5 H 1.09009 * 109.46800 * 330.00220 * 4 2 1 6 6 C 1.53001 * 109.47086 * 89.99774 * 4 2 1 7 7 C 1.52999 * 109.47286 * 180.02562 * 6 4 2 8 8 C 1.52996 * 109.47256 * 300.00347 * 7 6 4 9 9 H 1.08996 * 109.47303 * 299.99814 * 8 7 6 10 10 N 1.46495 * 109.47499 * 179.97438 * 8 7 6 11 11 C 1.34779 * 119.99856 * 84.99656 * 10 8 7 12 12 O 1.21282 * 120.00221 * 0.02562 * 11 10 8 13 13 C 1.50706 * 119.99917 * 180.02562 * 11 10 8 14 14 O 1.42899 * 109.47134 * 179.97438 * 13 11 10 15 15 C 1.35895 * 116.99705 * 179.97438 * 14 13 11 16 16 C 1.38719 * 120.05108 * 180.02562 * 15 14 13 17 17 C 1.38165 * 119.94195 * 180.02562 * 16 15 14 18 18 C 1.50703 * 119.97119 * 179.97438 * 17 16 15 19 19 O 1.42896 * 109.47055 * 300.00235 * 18 17 16 20 20 Si 1.86304 * 109.46911 * 180.02562 * 18 17 16 21 21 C 1.38243 * 120.05663 * 0.25381 * 17 16 15 22 22 C 1.38287 * 120.11182 * 359.49217 * 21 17 16 23 23 C 1.38130 * 120.05433 * 0.50426 * 22 21 17 24 24 C 1.53001 * 109.47257 * 59.99635 * 8 7 6 25 25 C 1.52996 * 109.47649 * 210.00239 * 4 2 1 26 26 H 1.09001 * 109.47502 * 239.99763 * 1 2 3 27 27 H 1.09007 * 109.46967 * 0.02562 * 1 2 3 28 28 H 1.09007 * 109.47169 * 119.99623 * 1 2 3 29 29 H 1.09001 * 109.47162 * 300.00737 * 6 4 2 30 30 H 1.09000 * 109.47121 * 60.00418 * 6 4 2 31 31 H 1.09001 * 109.47355 * 179.97438 * 7 6 4 32 32 H 1.09009 * 109.46992 * 60.00205 * 7 6 4 33 33 H 0.96996 * 119.99956 * 264.99926 * 10 8 7 34 34 H 1.08996 * 109.46992 * 60.00268 * 13 11 10 35 35 H 1.09002 * 109.46780 * 300.00376 * 13 11 10 36 36 H 1.07997 * 120.02683 * 0.04426 * 16 15 14 37 37 H 1.09002 * 109.47152 * 60.00043 * 18 17 16 38 38 H 0.96703 * 114.00193 * 180.02562 * 19 18 17 39 39 H 1.48501 * 109.99997 * 298.67752 * 20 18 17 40 40 H 1.48495 * 110.00011 * 60.00027 * 20 18 17 41 41 H 1.08000 * 119.94408 * 179.72423 * 21 17 16 42 42 H 1.07995 * 119.97350 * 180.23579 * 22 21 17 43 43 H 1.07994 * 120.02702 * 179.72256 * 23 22 21 44 44 H 1.09000 * 109.47121 * 60.00287 * 24 8 7 45 45 H 1.08998 * 109.47621 * 180.02562 * 24 8 7 46 46 H 1.09001 * 109.47246 * 59.99562 * 25 4 2 47 47 H 1.09000 * 109.46821 * 299.99743 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1108 1.0459 0.0000 4 6 2.2605 -1.3051 -0.0006 5 1 1.6714 -2.0650 0.5129 6 6 2.5155 -1.7461 -1.4433 7 6 3.2800 -3.0714 -1.4439 8 6 4.6168 -2.8894 -0.7224 9 1 5.2063 -2.1297 -1.2357 10 7 5.3486 -4.1585 -0.7225 11 6 6.1127 -4.4957 -1.7803 12 8 6.1949 -3.7483 -2.7319 13 6 6.8651 -5.8015 -1.7806 14 8 7.5961 -5.9298 -3.0018 15 6 8.3343 -7.0593 -3.1631 16 6 9.0691 -7.2490 -4.3243 17 6 9.8184 -8.3984 -4.4863 18 6 10.6164 -8.6054 -5.7478 19 8 9.7364 -8.6050 -6.8736 20 14 11.5079 -10.2389 -5.6576 21 6 9.8320 -9.3615 -3.4945 22 6 9.1045 -9.1724 -2.3338 23 6 8.3539 -8.0249 -2.1670 24 6 4.3619 -2.4483 0.7203 25 6 3.5974 -1.1225 0.7208 26 1 -0.3634 -0.5139 0.8899 27 1 -0.3633 1.0277 -0.0005 28 1 -0.3634 -0.5138 -0.8901 29 1 1.5631 -1.8762 -1.9572 30 1 3.1046 -0.9863 -1.9568 31 1 3.4613 -3.3858 -2.4718 32 1 2.6905 -3.8312 -0.9305 33 1 5.2832 -4.7560 0.0387 34 1 6.1594 -6.6274 -1.6916 35 1 7.5570 -5.8223 -0.9386 36 1 9.0557 -6.4986 -5.1010 37 1 11.3430 -7.7999 -5.8543 38 1 10.1827 -8.7341 -7.7217 39 1 12.4497 -10.2408 -4.5094 40 1 10.5278 -11.3450 -5.5125 41 1 10.4148 -10.2613 -3.6249 42 1 9.1199 -9.9244 -1.5589 43 1 7.7824 -7.8798 -1.2623 44 1 3.7725 -3.2080 1.2337 45 1 5.3142 -2.3182 1.2342 46 1 3.4157 -0.8083 1.7486 47 1 4.1864 -0.3627 0.2073 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13287736_4860298.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:14:25 Heat of formation + Delta-G solvation = -121.858069 kcal Electronic energy + Delta-G solvation = -27871.539076 eV Core-core repulsion = 23792.934339 eV Total energy + Delta-G solvation = -4078.604737 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.73723 -41.23794 -40.56906 -39.15248 -38.43460 -37.31340 -35.39958 -32.70276 -32.36995 -31.92970 -31.55873 -30.32662 -28.73416 -26.82820 -24.41212 -23.86798 -23.81898 -22.49141 -21.60810 -21.23709 -20.29723 -19.22731 -18.47907 -18.36596 -17.72520 -17.49609 -17.29307 -17.09890 -16.81168 -16.33618 -16.01261 -15.89131 -15.73195 -15.46050 -15.04066 -14.93070 -14.76132 -14.63945 -14.35752 -14.27949 -13.85334 -13.72882 -13.51717 -13.36872 -13.25871 -13.21291 -12.99616 -12.65346 -12.47976 -12.32974 -12.27053 -12.20458 -12.17717 -11.85599 -11.57288 -11.39059 -11.07543 -10.47591 -10.44022 -10.20547 -9.98018 -9.43205 -4.93171 0.06417 0.22023 0.95887 1.24964 1.38760 1.42957 1.65156 1.95874 2.48727 2.51527 3.05617 3.36671 3.45517 3.57848 3.60633 3.71940 3.78143 3.85050 3.91229 3.95599 4.01684 4.03598 4.12316 4.14741 4.19453 4.27724 4.30008 4.38408 4.39015 4.42986 4.54629 4.61401 4.64866 4.66835 4.77996 4.84379 4.94509 4.99039 5.06176 5.07459 5.09859 5.18316 5.19547 5.23695 5.28811 5.29069 5.41267 5.52721 6.17126 6.42507 6.54822 6.86693 7.09247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.357 3.643 3 O -0.508 6.508 4 C -0.133 4.133 5 H 0.135 0.865 6 C -0.102 4.102 7 C -0.120 4.120 8 C 0.143 3.857 9 H 0.054 0.946 10 N -0.703 5.703 11 C 0.512 3.488 12 O -0.573 6.573 13 C 0.036 3.964 14 O -0.319 6.319 15 C 0.120 3.880 16 C -0.145 4.145 17 C -0.052 4.052 18 C -0.092 4.092 19 O -0.566 6.566 20 Si 0.789 3.211 21 C -0.181 4.181 22 C -0.071 4.071 23 C -0.201 4.201 24 C -0.112 4.112 25 C -0.107 4.107 26 H 0.119 0.881 27 H 0.068 0.932 28 H 0.113 0.887 29 H 0.089 0.911 30 H 0.042 0.958 31 H 0.048 0.952 32 H 0.097 0.903 33 H 0.423 0.577 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.122 0.878 37 H 0.090 0.910 38 H 0.404 0.596 39 H -0.283 1.283 40 H -0.293 1.293 41 H 0.123 0.877 42 H 0.160 0.840 43 H 0.168 0.832 44 H 0.103 0.897 45 H 0.077 0.923 46 H 0.077 0.923 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.956 -7.305 5.265 9.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.235 3.765 3 O -0.384 6.384 4 C -0.152 4.152 5 H 0.153 0.847 6 C -0.140 4.140 7 C -0.159 4.159 8 C 0.039 3.961 9 H 0.073 0.927 10 N -0.357 5.357 11 C 0.298 3.702 12 O -0.452 6.452 13 C -0.042 4.042 14 O -0.232 6.232 15 C 0.075 3.925 16 C -0.164 4.164 17 C -0.052 4.052 18 C -0.200 4.200 19 O -0.376 6.376 20 Si 0.693 3.307 21 C -0.199 4.199 22 C -0.089 4.089 23 C -0.219 4.219 24 C -0.150 4.150 25 C -0.146 4.146 26 H 0.137 0.863 27 H 0.087 0.913 28 H 0.131 0.869 29 H 0.108 0.892 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.116 0.884 33 H 0.261 0.739 34 H 0.145 0.855 35 H 0.144 0.856 36 H 0.140 0.860 37 H 0.108 0.892 38 H 0.255 0.745 39 H -0.210 1.210 40 H -0.221 1.221 41 H 0.140 0.860 42 H 0.178 0.822 43 H 0.186 0.814 44 H 0.122 0.878 45 H 0.095 0.905 46 H 0.096 0.904 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.883 -6.652 5.388 8.765 hybrid contribution -0.215 0.603 0.331 0.721 sum -2.098 -6.049 5.719 8.585 Atomic orbital electron populations 1.22406 0.92059 1.05043 1.06677 1.25292 0.93432 0.89872 0.67868 1.90428 1.73268 1.36956 1.37775 1.21870 0.97784 0.97162 0.98381 0.84722 1.21368 1.01388 0.96789 0.94459 1.21841 0.95530 0.97972 1.00555 1.21019 0.92307 0.84884 0.97916 0.92743 1.45712 1.47370 1.22511 1.20104 1.20539 0.79354 0.87574 0.82714 1.90773 1.64462 1.53701 1.36219 1.22784 0.97208 0.96692 0.87490 1.86131 1.59485 1.37991 1.39632 1.19184 0.92125 0.86182 0.95012 1.20327 0.99776 0.99332 0.96963 1.19506 0.97035 0.93416 0.95281 1.25064 0.95914 1.13595 0.85431 1.86450 1.37043 1.96572 1.17515 0.94210 0.78023 0.72597 0.85846 1.21025 1.03703 0.98924 0.96219 1.21256 0.93577 0.97188 0.96835 1.21618 1.04898 0.94956 1.00473 1.21735 1.01784 0.97703 0.93765 1.21395 0.94932 0.97311 1.00927 0.86294 0.91288 0.86895 0.89208 0.93875 0.93359 0.88443 0.73889 0.85538 0.85565 0.86005 0.89205 0.74505 1.21044 1.22094 0.86011 0.82236 0.81450 0.87813 0.90460 0.90430 0.93566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 1.20 10.24 71.23 0.73 1.93 16 2 C 0.36 0.20 6.32 29.10 0.18 0.39 16 3 O -0.51 -5.56 16.90 -1.47 -0.02 -5.58 16 4 C -0.13 0.60 2.46 -11.54 -0.03 0.57 16 5 H 0.13 -1.53 8.12 -2.38 -0.02 -1.55 16 6 C -0.10 0.23 5.19 30.59 0.16 0.39 16 7 C -0.12 0.30 5.49 30.59 0.17 0.47 16 8 C 0.14 -0.22 2.45 44.99 0.11 -0.11 16 9 H 0.05 0.36 7.58 -2.39 -0.02 0.34 16 10 N -0.70 3.07 5.08 -442.54 -2.25 0.82 16 11 C 0.51 1.90 7.87 87.66 0.69 2.59 16 12 O -0.57 -9.27 16.16 16.00 0.26 -9.01 16 13 C 0.04 -0.07 5.22 71.24 0.37 0.31 16 14 O -0.32 -2.77 9.67 -73.33 -0.71 -3.48 16 15 C 0.12 0.86 6.69 22.51 0.15 1.01 16 16 C -0.15 -1.45 9.55 22.37 0.21 -1.24 16 17 C -0.05 -0.40 5.42 -19.88 -0.11 -0.51 16 18 C -0.09 -0.21 2.81 71.24 0.20 -0.01 16 19 O -0.57 -1.73 12.74 -148.98 -1.90 -3.63 16 20 Si 0.79 -1.03 29.79 68.60 2.04 1.01 16 21 C -0.18 -0.99 8.67 22.28 0.19 -0.80 16 22 C -0.07 -0.09 10.04 22.26 0.22 0.13 16 23 C -0.20 -0.14 9.04 22.37 0.20 0.06 16 24 C -0.11 0.75 5.39 30.61 0.17 0.91 16 25 C -0.11 0.25 4.80 30.61 0.15 0.40 16 26 H 0.12 -1.28 8.14 -2.39 -0.02 -1.30 16 27 H 0.07 -0.18 8.12 -2.38 -0.02 -0.20 16 28 H 0.11 -1.07 8.14 -2.38 -0.02 -1.09 16 29 H 0.09 -0.48 8.14 -2.39 -0.02 -0.50 16 30 H 0.04 0.16 8.14 -2.39 -0.02 0.14 16 31 H 0.05 0.17 8.14 -2.39 -0.02 0.15 16 32 H 0.10 -0.76 8.14 -2.38 -0.02 -0.78 16 33 H 0.42 -5.46 8.60 -92.71 -0.80 -6.26 16 34 H 0.13 -1.08 7.66 -2.39 -0.02 -1.10 16 35 H 0.13 -1.07 7.66 -2.39 -0.02 -1.09 16 36 H 0.12 1.42 8.06 -2.91 -0.02 1.40 16 37 H 0.09 -0.09 7.96 -2.39 -0.02 -0.10 16 38 H 0.40 -3.24 8.74 -74.05 -0.65 -3.88 16 39 H -0.28 -0.91 7.11 99.48 0.71 -0.20 16 40 H -0.29 -1.66 7.11 99.48 0.71 -0.95 16 41 H 0.12 0.50 4.87 -2.91 -0.01 0.48 16 42 H 0.16 -0.81 8.06 -2.91 -0.02 -0.83 16 43 H 0.17 -1.27 6.30 -2.91 -0.02 -1.29 16 44 H 0.10 -1.27 8.14 -2.39 -0.02 -1.29 16 45 H 0.08 -0.50 8.14 -2.39 -0.02 -0.52 16 46 H 0.08 -0.25 8.14 -2.39 -0.02 -0.27 16 47 H 0.05 0.19 7.86 -2.39 -0.02 0.17 16 Total: 0.00 -34.66 385.09 0.78 -33.89 By element: Atomic # 1 Polarization: -20.11 SS G_CDS: -0.42 Total: -20.53 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: 3.77 Total: 6.51 kcal Atomic # 7 Polarization: 3.07 SS G_CDS: -2.25 Total: 0.82 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -2.37 Total: -21.70 kcal Atomic # 14 Polarization: -1.03 SS G_CDS: 2.04 Total: 1.01 kcal Total: -34.66 0.78 -33.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13287736_4860298.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.973 kcal (2) G-P(sol) polarization free energy of solvation -34.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds