Wall clock time and date at job start Tue Mar 9 2021 13:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35998 * 116.99893 * 2 1 4 4 C 1.39149 * 120.07597 * 179.97438 * 3 2 1 5 5 O 1.35998 * 120.07268 * 0.02562 * 4 3 2 6 6 C 1.42900 * 117.00472 * 179.72404 * 5 4 3 7 7 C 1.50695 * 109.47198 * 180.02562 * 6 5 4 8 8 O 1.21281 * 120.00061 * 359.97438 * 7 6 5 9 9 N 1.34781 * 120.00002 * 180.02562 * 7 6 5 10 10 C 1.46498 * 119.99914 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.47589 * 34.99928 * 10 9 7 12 12 C 1.52997 * 109.46905 * 154.99967 * 10 9 7 13 13 C 1.53004 * 109.47139 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.47055 * 299.99793 * 13 12 10 15 15 H 1.08998 * 109.47156 * 300.00290 * 14 13 12 16 16 C 1.50699 * 109.47560 * 180.02562 * 14 13 12 17 17 N 1.30644 * 119.24900 * 335.00118 * 16 14 13 18 18 C 1.33523 * 121.50522 * 179.72200 * 17 16 14 19 19 C 1.36203 * 119.90853 * 0.02562 * 18 17 16 20 20 C 1.41025 * 118.59060 * 359.97438 * 19 18 17 21 21 O 1.21985 * 120.70543 * 179.97438 * 20 19 18 22 22 N 1.34744 * 119.25968 * 154.72826 * 16 14 13 23 23 C 1.52999 * 109.47182 * 59.99788 * 14 13 12 24 24 C 1.53000 * 109.47272 * 300.00411 * 23 14 13 25 25 C 1.38562 * 119.86145 * 179.72630 * 4 3 2 26 26 C 1.38244 * 119.99470 * 0.27677 * 25 4 3 27 27 C 1.38252 * 120.14783 * 0.02562 * 26 25 4 28 28 C 1.50698 * 119.93009 * 180.02562 * 27 26 25 29 29 O 1.42907 * 109.47083 * 244.99965 * 28 27 26 30 30 Si 1.86301 * 109.47071 * 4.99821 * 28 27 26 31 31 C 1.38247 * 120.14882 * 359.97438 * 27 26 25 32 32 H 1.09004 * 109.47253 * 300.00205 * 1 2 3 33 33 H 1.08996 * 109.47334 * 59.99777 * 1 2 3 34 34 H 1.08999 * 109.47091 * 180.02562 * 1 2 3 35 35 H 1.08999 * 109.46804 * 59.99883 * 6 5 4 36 36 H 1.08997 * 109.46810 * 299.99704 * 6 5 4 37 37 H 0.97002 * 120.00064 * 359.97438 * 9 7 6 38 38 H 1.09004 * 109.47580 * 60.00024 * 12 10 9 39 39 H 1.08997 * 109.47595 * 299.99612 * 12 10 9 40 40 H 1.09002 * 109.47392 * 179.97438 * 13 12 10 41 41 H 1.08998 * 109.47376 * 59.99948 * 13 12 10 42 42 H 1.07999 * 120.04464 * 180.02562 * 18 17 16 43 43 H 1.07990 * 120.70421 * 180.02562 * 19 18 17 44 44 H 0.97006 * 120.03357 * 0.30122 * 22 16 14 45 45 H 1.09003 * 109.47090 * 60.00336 * 23 14 13 46 46 H 1.09004 * 109.47530 * 179.97438 * 23 14 13 47 47 H 1.08998 * 109.47105 * 299.99522 * 24 23 14 48 48 H 1.09002 * 109.47365 * 179.97438 * 24 23 14 49 49 H 1.07995 * 120.00900 * 180.30015 * 25 4 3 50 50 H 1.08004 * 119.93112 * 179.97438 * 26 25 4 51 51 H 1.08996 * 109.47552 * 124.99552 * 28 27 26 52 52 H 0.96695 * 113.99835 * 59.99431 * 29 28 27 53 53 H 1.48496 * 110.00334 * 180.02562 * 30 28 27 54 54 H 1.48506 * 109.99826 * 301.31816 * 30 28 27 55 55 H 1.07993 * 120.00679 * 180.02562 * 31 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 3.4358 1.2865 0.0005 5 8 4.1795 0.1478 0.0005 6 6 5.6003 0.3008 -0.0050 7 6 6.2518 -1.0581 -0.0048 8 8 5.5669 -2.0590 0.0002 9 7 7.5957 -1.1611 -0.0091 10 6 8.2291 -2.4821 -0.0094 11 1 7.6252 -3.1744 -0.5959 12 6 9.6264 -2.3775 -0.6237 13 6 10.2882 -3.7570 -0.6235 14 6 10.4001 -4.2687 0.8140 15 1 11.0038 -3.5760 1.4003 16 6 11.0525 -5.6272 0.8144 17 7 10.9741 -6.3732 -0.2552 18 6 11.5400 -7.5815 -0.3061 19 6 12.2171 -8.0604 0.7743 20 6 12.3018 -7.2551 1.9289 21 8 12.8984 -7.6460 2.9186 22 7 11.7081 -6.0426 1.9158 23 6 9.0028 -4.3732 1.4284 24 6 8.3410 -2.9938 1.4281 25 6 4.0603 2.5234 -0.0052 26 6 3.3029 3.6799 -0.0057 27 6 1.9224 3.6058 0.0001 28 6 1.1015 4.8696 -0.0010 29 8 0.3694 4.9632 1.2227 30 14 2.2301 6.3429 -0.1637 31 6 1.2931 2.3749 0.0059 32 1 -0.3634 0.5139 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 -0.3633 -1.0277 0.0005 35 1 5.9097 0.8527 0.8825 36 1 5.9032 0.8484 -0.8975 37 1 8.1435 -0.3605 -0.0126 38 1 10.2303 -1.6851 -0.0372 39 1 9.5468 -2.0125 -1.6477 40 1 11.2835 -3.6826 -1.0616 41 1 9.6844 -4.4497 -1.2098 42 1 11.4609 -8.1783 -1.2027 43 1 12.6801 -9.0356 0.7470 44 1 11.7529 -5.4714 2.6986 45 1 8.3990 -5.0660 0.8422 46 1 9.0825 -4.7382 2.4524 47 1 8.9447 -2.3011 2.0144 48 1 7.3453 -3.0683 1.8655 49 1 5.1385 2.5841 -0.0097 50 1 3.7906 4.6435 -0.0097 51 1 0.4060 4.8505 -0.8400 52 1 0.9259 4.9850 2.0132 53 1 1.4329 7.5957 -0.1654 54 1 3.2041 6.3629 0.9572 55 1 0.2146 2.3197 0.0100 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13456076_60476.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:18:47 Heat of formation + Delta-G solvation = -109.485177 kcal Electronic energy + Delta-G solvation = -38802.654636 eV Core-core repulsion = 33579.298755 eV Total energy + Delta-G solvation = -5223.355881 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 416.187 amu Computer time = 2.98 seconds Orbital eigenvalues (eV) -42.89824 -41.80603 -41.06162 -39.83057 -39.21832 -38.92392 -38.38778 -37.00955 -35.85950 -35.16040 -32.71964 -32.01177 -31.78468 -31.45392 -30.59595 -28.96891 -28.40133 -26.24087 -25.77543 -25.29966 -23.73526 -23.63051 -22.78751 -22.38951 -21.53762 -20.82425 -19.78328 -19.76367 -19.16960 -18.62801 -18.31403 -17.97506 -17.78250 -17.48517 -17.21837 -17.08592 -17.00390 -16.65424 -16.13717 -16.08228 -15.80909 -15.79072 -15.68098 -15.60681 -15.39598 -15.15734 -14.97702 -14.66414 -14.43714 -14.32304 -14.07150 -13.98898 -13.74047 -13.55561 -13.49322 -13.35484 -13.14014 -12.63695 -12.57908 -12.47510 -12.33732 -12.15530 -12.12709 -12.10021 -12.02909 -11.97606 -11.61184 -11.58749 -11.38400 -11.30555 -11.08829 -10.88479 -10.60136 -10.08767 -9.77222 -9.67070 -8.90490 -4.87493 -0.45695 0.18356 0.29429 0.67674 1.34316 1.52360 1.52714 1.57825 1.63910 2.00696 2.32051 2.49917 2.56950 2.60597 2.79563 3.41118 3.42114 3.54406 3.63186 3.66127 3.68443 3.72596 3.88042 3.93776 4.00023 4.07601 4.13533 4.16055 4.18188 4.20257 4.29900 4.30163 4.30966 4.37194 4.37766 4.41635 4.50175 4.53659 4.58030 4.65863 4.66580 4.68443 4.85355 4.88506 5.02356 5.03083 5.09198 5.14130 5.18225 5.24724 5.33500 5.35248 5.38633 5.43139 5.47655 5.57513 5.61619 5.99252 6.47380 6.50259 6.59174 6.66504 6.70882 7.23270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.335 6.335 3 C 0.076 3.924 4 C 0.086 3.914 5 O -0.315 6.315 6 C 0.032 3.968 7 C 0.512 3.488 8 O -0.573 6.573 9 N -0.704 5.704 10 C 0.143 3.857 11 H 0.061 0.939 12 C -0.115 4.115 13 C -0.094 4.094 14 C -0.039 4.039 15 H 0.135 0.865 16 C 0.409 3.591 17 N -0.545 5.545 18 C 0.173 3.827 19 C -0.319 4.319 20 C 0.509 3.491 21 O -0.593 6.593 22 N -0.615 5.615 23 C -0.105 4.105 24 C -0.121 4.121 25 C -0.159 4.159 26 C -0.111 4.111 27 C -0.116 4.116 28 C -0.086 4.086 29 O -0.551 6.551 30 Si 0.777 3.223 31 C -0.152 4.152 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.110 0.890 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.423 0.577 38 H 0.100 0.900 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.198 0.802 43 H 0.158 0.842 44 H 0.429 0.571 45 H 0.059 0.941 46 H 0.076 0.924 47 H 0.095 0.905 48 H 0.047 0.953 49 H 0.177 0.823 50 H 0.158 0.842 51 H 0.121 0.879 52 H 0.386 0.614 53 H -0.308 1.308 54 H -0.273 1.273 55 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.120 9.524 -4.507 11.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.249 6.249 3 C 0.030 3.970 4 C 0.041 3.959 5 O -0.228 6.228 6 C -0.045 4.045 7 C 0.298 3.702 8 O -0.451 6.451 9 N -0.358 5.358 10 C 0.039 3.961 11 H 0.080 0.920 12 C -0.153 4.153 13 C -0.132 4.132 14 C -0.059 4.059 15 H 0.152 0.848 16 C 0.144 3.856 17 N -0.268 5.268 18 C 0.033 3.967 19 C -0.343 4.343 20 C 0.309 3.691 21 O -0.476 6.476 22 N -0.252 5.252 23 C -0.144 4.144 24 C -0.160 4.160 25 C -0.177 4.177 26 C -0.129 4.129 27 C -0.117 4.117 28 C -0.194 4.194 29 O -0.359 6.359 30 Si 0.682 3.318 31 C -0.171 4.171 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.129 0.871 35 H 0.144 0.856 36 H 0.146 0.854 37 H 0.261 0.739 38 H 0.118 0.882 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.090 0.910 42 H 0.214 0.786 43 H 0.176 0.824 44 H 0.269 0.731 45 H 0.078 0.922 46 H 0.095 0.905 47 H 0.114 0.886 48 H 0.066 0.934 49 H 0.194 0.806 50 H 0.175 0.825 51 H 0.139 0.861 52 H 0.235 0.765 53 H -0.236 1.236 54 H -0.199 1.199 55 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.457 8.870 -4.800 10.661 hybrid contribution -0.212 -0.673 2.329 2.434 sum 3.245 8.196 -2.471 9.155 Atomic orbital electron populations 1.23275 0.76869 1.05168 1.02070 1.86189 1.22945 1.26687 1.89106 1.18682 0.89987 0.85556 1.02734 1.18589 0.88160 0.86598 1.02573 1.86227 1.18386 1.28989 1.89238 1.22816 0.79230 0.95478 1.06993 1.20546 0.83294 0.90666 0.75734 1.90782 1.64208 1.40159 1.49971 1.45720 1.04896 1.10475 1.74708 1.21052 0.94688 0.83822 0.96563 0.92024 1.21783 0.92940 0.97938 1.02647 1.21342 1.02539 0.96100 0.93262 1.20685 0.96463 0.87380 1.01375 0.84773 1.23754 0.84762 0.96186 0.80853 1.68394 1.26461 1.07853 1.24123 1.23177 0.85462 0.89899 0.98140 1.23003 1.12092 1.04824 0.94405 1.17659 0.79733 0.81690 0.89975 1.90990 1.46228 1.72993 1.37372 1.44627 1.44398 1.18547 1.17661 1.21496 0.93554 0.97988 1.01380 1.21836 1.00754 0.96501 0.96880 1.21379 1.02284 0.89246 1.04797 1.21049 0.92413 0.99148 1.00272 1.20107 0.94463 0.94646 1.02453 1.25320 1.02297 1.02305 0.89453 1.86573 1.37431 1.95571 1.16332 0.93980 0.77274 0.72357 0.88225 1.21020 1.00477 0.90598 1.05027 0.92018 0.91567 0.87141 0.85639 0.85363 0.73916 0.88203 0.89812 0.89835 0.91008 0.78565 0.82385 0.73060 0.92202 0.90547 0.88649 0.93433 0.80573 0.82514 0.86117 0.76466 1.23639 1.19901 0.84222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.04 9.81 113.37 1.11 1.15 16 2 O -0.33 -3.51 10.28 -79.66 -0.82 -4.33 16 3 C 0.08 0.54 6.70 22.57 0.15 0.69 16 4 C 0.09 0.37 6.70 22.57 0.15 0.52 16 5 O -0.31 -2.21 9.45 -67.12 -0.63 -2.84 16 6 C 0.03 -0.15 5.22 71.23 0.37 0.22 16 7 C 0.51 0.40 7.87 87.65 0.69 1.09 16 8 O -0.57 -7.84 16.16 16.00 0.26 -7.58 16 9 N -0.70 5.74 5.08 -442.54 -2.25 3.49 16 10 C 0.14 -0.93 2.45 44.99 0.11 -0.82 16 11 H 0.06 0.05 7.58 -2.39 -0.02 0.03 16 12 C -0.12 1.44 5.39 30.59 0.16 1.61 16 13 C -0.09 0.92 4.67 30.60 0.14 1.06 16 14 C -0.04 0.39 2.48 -11.54 -0.03 0.36 16 15 H 0.13 -2.14 8.14 -2.39 -0.02 -2.16 16 16 C 0.41 -1.62 6.73 138.18 0.93 -0.69 16 17 N -0.55 0.65 9.11 -187.55 -1.71 -1.06 16 18 C 0.17 -0.23 11.20 83.96 0.94 0.71 16 19 C -0.32 -1.03 10.07 22.48 0.23 -0.80 16 20 C 0.51 3.72 7.75 84.89 0.66 4.37 16 21 O -0.59 -9.89 17.97 -5.27 -0.09 -9.99 16 22 N -0.61 0.88 5.25 -310.70 -1.63 -0.75 16 23 C -0.10 0.74 5.19 30.59 0.16 0.90 16 24 C -0.12 0.81 5.49 30.59 0.17 0.98 16 25 C -0.16 0.62 9.04 22.35 0.20 0.83 16 26 C -0.11 0.48 8.66 22.27 0.19 0.67 16 27 C -0.12 0.09 5.35 -19.86 -0.11 -0.02 16 28 C -0.09 0.17 2.80 71.24 0.20 0.37 16 29 O -0.55 -0.87 12.83 -148.98 -1.91 -2.79 16 30 Si 0.78 -3.68 29.88 68.60 2.05 -1.63 16 31 C -0.15 -0.47 8.67 22.35 0.19 -0.27 16 32 H 0.06 0.01 7.65 -2.38 -0.02 -0.01 16 33 H 0.07 -0.04 7.67 -2.39 -0.02 -0.06 16 34 H 0.11 -0.06 8.14 -2.39 -0.02 -0.08 16 35 H 0.13 -1.46 7.66 -2.39 -0.02 -1.47 16 36 H 0.13 -1.52 7.66 -2.39 -0.02 -1.54 16 37 H 0.42 -7.00 8.60 -92.71 -0.80 -7.80 16 38 H 0.10 -1.72 8.14 -2.38 -0.02 -1.74 16 39 H 0.08 -1.04 8.14 -2.39 -0.02 -1.06 16 40 H 0.08 -0.86 8.14 -2.39 -0.02 -0.88 16 41 H 0.07 -0.39 7.76 -2.39 -0.02 -0.41 16 42 H 0.20 -1.47 8.06 -2.91 -0.02 -1.50 16 43 H 0.16 0.33 8.06 -2.92 -0.02 0.30 16 44 H 0.43 -2.69 8.78 -92.70 -0.81 -3.51 16 45 H 0.06 -0.15 8.14 -2.39 -0.02 -0.17 16 46 H 0.08 -0.59 8.14 -2.38 -0.02 -0.61 16 47 H 0.10 -1.10 8.14 -2.39 -0.02 -1.12 16 48 H 0.05 0.01 8.14 -2.39 -0.02 -0.01 16 49 H 0.18 -2.20 6.30 -2.91 -0.02 -2.22 16 50 H 0.16 -1.50 4.83 -2.91 -0.01 -1.52 16 51 H 0.12 -0.37 7.96 -2.39 -0.02 -0.39 16 52 H 0.39 -1.58 8.70 -74.06 -0.64 -2.23 16 53 H -0.31 -1.18 7.11 99.48 0.71 -0.47 16 54 H -0.27 0.68 7.00 99.48 0.70 1.37 16 55 H 0.14 0.25 6.30 -2.91 -0.02 0.23 16 Total: 0.00 -42.17 449.23 -1.36 -43.53 By element: Atomic # 1 Polarization: -27.75 SS G_CDS: -1.25 Total: -29.00 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: 6.63 Total: 12.94 kcal Atomic # 7 Polarization: 7.27 SS G_CDS: -5.59 Total: 1.69 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -3.20 Total: -27.52 kcal Atomic # 14 Polarization: -3.68 SS G_CDS: 2.05 Total: -1.63 kcal Total: -42.17 -1.36 -43.53 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13456076_60476.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.957 kcal (2) G-P(sol) polarization free energy of solvation -42.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.98 seconds