Wall clock time and date at job start Tue Mar 9 2021 12:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86301 * 109.46974 * 2 1 4 4 C 1.50701 * 109.47417 * 120.00123 * 2 1 3 5 5 C 1.34230 * 126.49811 * 254.69070 * 4 2 1 6 6 N 1.36844 * 109.93683 * 179.88912 * 5 4 2 7 7 C 1.46499 * 125.06268 * 180.11800 * 6 5 4 8 8 C 1.50695 * 109.47421 * 265.30320 * 7 6 5 9 9 O 1.21288 * 119.99710 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00382 * 180.02562 * 8 7 6 11 11 C 1.46499 * 120.00100 * 179.97438 * 10 8 7 12 12 H 1.08996 * 109.47025 * 324.99706 * 11 10 8 13 13 C 1.53003 * 109.46966 * 84.99700 * 11 10 8 14 14 C 1.53000 * 109.46825 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.47693 * 300.00412 * 14 13 11 16 16 H 1.09005 * 109.47061 * 299.99862 * 15 14 13 17 17 C 1.52999 * 109.47442 * 180.02562 * 15 14 13 18 18 C 1.52992 * 109.47233 * 64.99429 * 17 15 14 19 19 O 1.42906 * 109.47036 * 179.97438 * 18 17 15 20 20 C 1.52998 * 109.47097 * 59.99281 * 15 14 13 21 21 C 1.52991 * 109.47760 * 300.00625 * 20 15 14 22 22 C 1.37693 * 109.86960 * 0.38314 * 6 5 4 23 23 C 1.39087 * 133.51162 * 179.79565 * 22 6 5 24 24 C 1.37794 * 119.77305 * 179.97438 * 23 22 6 25 25 C 1.38787 * 120.66956 * 359.97438 * 24 23 22 26 26 C 1.36656 * 120.52472 * 0.02776 * 25 24 23 27 27 C 1.39589 * 119.76815 * 359.97438 * 26 25 24 28 28 H 0.96699 * 114.00604 * 59.99761 * 1 2 3 29 29 H 1.09002 * 109.46984 * 240.00143 * 2 1 3 30 30 H 1.48498 * 110.00005 * 60.00258 * 3 2 1 31 31 H 1.48501 * 110.00049 * 181.31921 * 3 2 1 32 32 H 1.08003 * 125.03649 * 359.97438 * 5 4 2 33 33 H 1.08998 * 109.46966 * 25.30558 * 7 6 5 34 34 H 1.09002 * 109.46961 * 145.30176 * 7 6 5 35 35 H 0.96998 * 119.99446 * 359.97438 * 10 8 7 36 36 H 1.08992 * 109.47127 * 300.00098 * 13 11 10 37 37 H 1.09005 * 109.47077 * 60.00157 * 13 11 10 38 38 H 1.09004 * 109.46899 * 180.02562 * 14 13 11 39 39 H 1.09005 * 109.46754 * 60.00462 * 14 13 11 40 40 H 1.08997 * 109.47023 * 185.00145 * 17 15 14 41 41 H 1.09005 * 109.46696 * 304.99666 * 17 15 14 42 42 H 1.08997 * 109.47701 * 300.00301 * 18 17 15 43 43 H 1.09005 * 109.47086 * 60.00475 * 18 17 15 44 44 H 0.96697 * 114.00153 * 180.02562 * 19 18 17 45 45 H 1.08999 * 109.47292 * 179.97438 * 20 15 14 46 46 H 1.09004 * 109.46482 * 60.00863 * 20 15 14 47 47 H 1.09004 * 109.47317 * 299.99726 * 21 20 15 48 48 H 1.08994 * 109.47408 * 179.97438 * 21 20 15 49 49 H 1.07996 * 120.11542 * 359.97438 * 23 22 6 50 50 H 1.08005 * 119.66308 * 179.97438 * 24 23 22 51 51 H 1.08000 * 119.73496 * 180.02562 * 25 24 23 52 52 H 1.08007 * 120.11490 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 2.4661 -0.1380 2.3204 6 7 2.8041 -1.0991 3.2340 7 6 3.4104 -0.8406 4.5423 8 6 4.9086 -0.9627 4.4347 9 8 5.4196 -1.2381 3.3697 10 7 5.6807 -0.7659 5.5217 11 6 7.1370 -0.8852 5.4171 12 1 7.3869 -1.6698 4.7031 13 6 7.7246 0.4446 4.9401 14 6 9.2457 0.3202 4.8315 15 6 9.8278 -0.0324 6.2017 16 1 9.5776 0.7524 6.9157 17 6 11.3490 -0.1562 6.0932 18 6 11.9474 1.2062 5.7375 19 8 13.3682 1.0907 5.6367 20 6 9.2401 -1.3620 6.6787 21 6 7.7191 -1.2377 6.7874 22 6 2.4947 -2.3458 2.7379 23 6 2.6296 -3.6363 3.2388 24 6 2.2148 -4.7107 2.4823 25 6 1.6623 -4.5191 1.2237 26 6 1.5205 -3.2598 0.7122 27 6 1.9340 -2.1570 1.4614 28 1 -0.3934 0.4417 -0.7650 29 1 1.7923 -0.5138 -0.8900 30 1 1.5614 2.4679 1.2085 31 1 3.5345 1.7704 -0.0321 32 1 2.6075 0.9240 2.4569 33 1 3.1506 0.1657 4.8707 34 1 3.0378 -1.5663 5.2653 35 1 5.2720 -0.5453 6.3733 36 1 7.3096 0.6959 3.9641 37 1 7.4747 1.2293 5.6542 38 1 9.6644 1.2676 4.4921 39 1 9.4960 -0.4646 4.1176 40 1 11.7550 -0.4937 7.0467 41 1 11.6002 -0.8776 5.3156 42 1 11.5414 1.5437 4.7839 43 1 11.6962 1.9276 6.5151 44 1 13.8153 1.9186 5.4135 45 1 9.6552 -1.6135 7.6547 46 1 9.4905 -2.1468 5.9648 47 1 7.4688 -0.4529 7.5014 48 1 7.3005 -2.1851 7.1268 49 1 3.0580 -3.7957 4.2173 50 1 2.3208 -5.7121 2.8728 51 1 1.3419 -5.3721 0.6438 52 1 1.0901 -3.1184 -0.2682 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13461142_9818708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:54:32 Heat of formation + Delta-G solvation = -66.409360 kcal Electronic energy + Delta-G solvation = -32203.334185 eV Core-core repulsion = 27941.088787 eV Total energy + Delta-G solvation = -4262.245398 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 359.193 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.66330 -41.17558 -39.71235 -38.14889 -37.84871 -37.57898 -35.83348 -34.33598 -32.92806 -31.88815 -31.48258 -30.38930 -29.45339 -28.13958 -25.79767 -24.48487 -23.94082 -23.63443 -22.73965 -21.82475 -21.67995 -20.91222 -20.61931 -18.67345 -18.38358 -18.31919 -18.26293 -17.83965 -17.11255 -16.65151 -16.54230 -16.29711 -16.02655 -15.56429 -15.47918 -15.25696 -15.09959 -14.98849 -14.95149 -14.84587 -14.66546 -14.56911 -14.20982 -13.78923 -13.64526 -13.59665 -13.37588 -13.22751 -12.96365 -12.78203 -12.66389 -12.49897 -12.25178 -12.19686 -12.08818 -12.03581 -11.83716 -11.80402 -11.42269 -11.27028 -11.14117 -10.87013 -10.64912 -10.21882 -10.19954 -9.27673 -8.75347 -4.99983 0.02872 0.55448 1.28721 1.30382 1.33129 1.48697 1.67173 1.95547 2.08639 2.87146 3.21402 3.43316 3.46148 3.53546 3.59096 3.63034 3.65537 3.78096 3.88356 3.94087 3.95720 3.99596 4.10866 4.16697 4.20028 4.20527 4.27923 4.33304 4.33964 4.43440 4.48193 4.49855 4.50069 4.53810 4.59563 4.69411 4.69896 4.81507 4.85805 4.96250 4.99883 5.05367 5.06666 5.08251 5.12635 5.15673 5.30606 5.35118 5.42596 5.46420 5.56831 5.63740 5.64403 6.02917 6.13802 6.37110 6.81888 6.98370 7.03559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.565 6.565 2 C -0.046 4.046 3 Si 0.786 3.214 4 C -0.180 4.180 5 C 0.052 3.948 6 N -0.467 5.467 7 C 0.086 3.914 8 C 0.491 3.509 9 O -0.572 6.572 10 N -0.707 5.707 11 C 0.147 3.853 12 H 0.057 0.943 13 C -0.122 4.122 14 C -0.113 4.113 15 C -0.076 4.076 16 H 0.088 0.912 17 C -0.116 4.116 18 C 0.069 3.931 19 O -0.601 6.601 20 C -0.111 4.111 21 C -0.115 4.115 22 C 0.090 3.910 23 C -0.137 4.137 24 C -0.102 4.102 25 C -0.151 4.151 26 C -0.082 4.082 27 C -0.120 4.120 28 H 0.399 0.601 29 H 0.074 0.926 30 H -0.280 1.280 31 H -0.302 1.302 32 H 0.174 0.826 33 H 0.154 0.846 34 H 0.148 0.852 35 H 0.420 0.580 36 H 0.038 0.962 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.049 0.951 40 H 0.069 0.931 41 H 0.055 0.945 42 H 0.051 0.949 43 H 0.058 0.942 44 H 0.396 0.604 45 H 0.082 0.918 46 H 0.055 0.945 47 H 0.091 0.909 48 H 0.077 0.923 49 H 0.133 0.867 50 H 0.150 0.850 51 H 0.145 0.855 52 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.437 4.267 4.459 6.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.374 6.374 2 C -0.156 4.156 3 Si 0.691 3.309 4 C -0.187 4.187 5 C -0.073 4.073 6 N -0.150 5.150 7 C -0.038 4.038 8 C 0.276 3.724 9 O -0.450 6.450 10 N -0.360 5.360 11 C 0.042 3.958 12 H 0.075 0.925 13 C -0.161 4.161 14 C -0.151 4.151 15 C -0.094 4.094 16 H 0.107 0.893 17 C -0.154 4.154 18 C -0.008 4.008 19 O -0.410 6.410 20 C -0.149 4.149 21 C -0.153 4.153 22 C -0.015 4.015 23 C -0.157 4.157 24 C -0.121 4.121 25 C -0.170 4.170 26 C -0.100 4.100 27 C -0.124 4.124 28 H 0.250 0.750 29 H 0.092 0.908 30 H -0.207 1.207 31 H -0.230 1.230 32 H 0.191 0.809 33 H 0.172 0.828 34 H 0.166 0.834 35 H 0.258 0.742 36 H 0.057 0.943 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.068 0.932 40 H 0.087 0.913 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.076 0.924 44 H 0.246 0.754 45 H 0.100 0.900 46 H 0.073 0.927 47 H 0.109 0.891 48 H 0.095 0.905 49 H 0.151 0.849 50 H 0.168 0.832 51 H 0.162 0.838 52 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.523 3.814 5.134 6.417 hybrid contribution 0.340 0.077 0.063 0.355 sum -0.182 3.891 5.197 6.495 Atomic orbital electron populations 1.86479 1.17596 1.82407 1.50924 1.24228 0.85377 1.10592 0.95398 0.94275 0.76689 0.74524 0.85442 1.20045 1.09447 0.91962 0.97258 1.21706 1.01657 0.94377 0.89569 1.43395 1.52228 1.03963 1.15402 1.21991 0.89090 1.08688 0.84064 1.21386 0.90388 0.76411 0.84199 1.90796 1.75778 1.48572 1.29881 1.45911 1.06943 1.70944 1.12189 1.20977 0.78713 0.97333 0.98743 0.92506 1.21836 0.95796 0.97614 1.00819 1.21606 0.94313 1.01826 0.97377 1.21069 0.92811 0.98641 0.96925 0.89343 1.21554 0.94983 0.96627 1.02220 1.22362 0.80318 0.97844 1.00277 1.86430 1.20463 1.40019 1.94096 1.21524 0.94418 0.96765 1.02227 1.21742 0.95572 1.03328 0.94678 1.18488 1.01628 0.86891 0.94531 1.20268 1.04984 0.88848 1.01622 1.21201 0.97577 0.98967 0.94342 1.20984 1.02023 0.97093 0.96870 1.20503 0.98581 0.91314 0.99632 1.19352 1.04480 0.93477 0.95070 0.75035 0.90794 1.20657 1.22967 0.80889 0.82795 0.83444 0.74163 0.94325 0.89932 0.91056 0.93202 0.91266 0.92622 0.93071 0.92419 0.75392 0.89977 0.92661 0.89070 0.90458 0.84896 0.83192 0.83770 0.85355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.41 12.86 -148.98 -1.92 -4.32 16 2 C -0.05 -0.24 3.05 71.24 0.22 -0.02 16 3 Si 0.79 0.62 30.78 68.60 2.11 2.73 16 4 C -0.18 -2.08 5.61 -18.63 -0.10 -2.19 16 5 C 0.05 0.49 9.89 83.00 0.82 1.31 16 6 N -0.47 -3.56 2.27 -520.00 -1.18 -4.74 16 7 C 0.09 -0.18 6.48 85.63 0.55 0.37 16 8 C 0.49 1.45 7.86 87.66 0.69 2.14 16 9 O -0.57 -8.52 16.09 -3.05 -0.05 -8.57 16 10 N -0.71 2.81 5.08 -442.53 -2.25 0.57 16 11 C 0.15 -0.17 2.45 44.99 0.11 -0.06 16 12 H 0.06 0.34 7.58 -2.39 -0.02 0.32 16 13 C -0.12 0.06 5.50 30.60 0.17 0.23 16 14 C -0.11 0.10 4.96 30.59 0.15 0.25 16 15 C -0.08 0.28 2.19 -10.80 -0.02 0.25 16 16 H 0.09 -0.52 8.14 -2.38 -0.02 -0.54 16 17 C -0.12 0.04 5.05 30.59 0.15 0.20 16 18 C 0.07 -0.05 6.80 71.98 0.49 0.44 16 19 O -0.60 -1.72 13.66 -148.98 -2.04 -3.76 16 20 C -0.11 0.48 5.20 30.59 0.16 0.63 16 21 C -0.12 0.73 5.39 30.59 0.16 0.90 16 22 C 0.09 1.02 6.80 39.03 0.27 1.29 16 23 C -0.14 -1.06 10.00 22.37 0.22 -0.84 16 24 C -0.10 -0.61 10.01 22.30 0.22 -0.39 16 25 C -0.15 -1.07 9.97 22.03 0.22 -0.85 16 26 C -0.08 -0.87 10.05 22.23 0.22 -0.64 16 27 C -0.12 -1.62 6.35 -20.20 -0.13 -1.75 16 28 H 0.40 -2.80 8.74 -74.06 -0.65 -3.45 16 29 H 0.07 0.24 7.96 -2.39 -0.02 0.23 16 30 H -0.28 -1.34 7.05 99.48 0.70 -0.64 16 31 H -0.30 -2.50 7.11 99.48 0.71 -1.79 16 32 H 0.17 0.89 6.30 -2.91 -0.02 0.87 16 33 H 0.15 -1.42 8.12 -2.39 -0.02 -1.44 16 34 H 0.15 -1.19 8.14 -2.39 -0.02 -1.21 16 35 H 0.42 -4.95 8.60 -92.71 -0.80 -5.75 16 36 H 0.04 0.22 8.14 -2.39 -0.02 0.20 16 37 H 0.08 -0.32 8.14 -2.38 -0.02 -0.34 16 38 H 0.07 -0.11 6.56 -2.39 -0.02 -0.13 16 39 H 0.05 0.14 8.14 -2.38 -0.02 0.12 16 40 H 0.07 0.01 8.14 -2.39 -0.02 -0.01 16 41 H 0.05 0.15 8.14 -2.38 -0.02 0.13 16 42 H 0.05 -0.09 6.56 -2.39 -0.02 -0.11 16 43 H 0.06 -0.20 8.14 -2.38 -0.02 -0.22 16 44 H 0.40 -2.28 9.12 -74.06 -0.68 -2.95 16 45 H 0.08 -0.47 8.14 -2.39 -0.02 -0.49 16 46 H 0.05 -0.08 8.14 -2.38 -0.02 -0.09 16 47 H 0.09 -0.90 8.14 -2.38 -0.02 -0.92 16 48 H 0.08 -0.52 8.14 -2.39 -0.02 -0.54 16 49 H 0.13 0.37 8.06 -2.91 -0.02 0.35 16 50 H 0.15 0.03 8.06 -2.91 -0.02 0.01 16 51 H 0.14 0.27 8.06 -2.91 -0.02 0.25 16 52 H 0.13 1.00 8.06 -2.91 -0.02 0.97 16 Total: 0.00 -32.13 417.99 -1.88 -34.01 By element: Atomic # 1 Polarization: -16.03 SS G_CDS: -1.15 Total: -17.18 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: 4.58 Total: 1.27 kcal Atomic # 7 Polarization: -0.75 SS G_CDS: -3.43 Total: -4.18 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: -4.00 Total: -16.65 kcal Atomic # 14 Polarization: 0.62 SS G_CDS: 2.11 Total: 2.73 kcal Total: -32.13 -1.88 -34.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13461142_9818708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.401 kcal (2) G-P(sol) polarization free energy of solvation -32.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds