Wall clock time and date at job start Tue Mar 9 2021 12:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86304 * 109.46888 * 2 1 4 4 C 1.50697 * 109.46868 * 119.99699 * 2 1 3 5 5 C 1.38249 * 119.94291 * 65.00267 * 4 2 1 6 6 C 1.38227 * 120.04921 * 179.97438 * 5 4 2 7 7 Br 1.89093 * 120.03977 * 179.97438 * 6 5 4 8 8 C 1.38800 * 119.92746 * 0.02562 * 6 5 4 9 9 O 1.35921 * 120.05863 * 179.97438 * 8 6 5 10 10 C 1.42894 * 116.99663 * 180.02562 * 9 8 6 11 11 C 1.50703 * 109.46810 * 180.02562 * 10 9 8 12 12 O 1.21279 * 120.00177 * 359.97438 * 11 10 9 13 13 N 1.34782 * 120.00040 * 179.97438 * 11 10 9 14 14 C 1.46499 * 120.00074 * 179.97438 * 13 11 10 15 15 H 1.09001 * 109.46813 * 35.00305 * 14 13 11 16 16 C 1.53000 * 109.46840 * 155.00031 * 14 13 11 17 17 C 1.52997 * 109.47060 * 180.02562 * 16 14 13 18 18 C 1.53006 * 109.47127 * 300.00449 * 17 16 14 19 19 H 1.09001 * 109.47002 * 299.99574 * 18 17 16 20 20 C 1.50703 * 109.47126 * 179.97438 * 18 17 16 21 21 N 1.29901 * 124.85049 * 119.99792 * 20 18 17 22 22 C 1.36068 * 108.80317 * 180.02562 * 21 20 18 23 23 C 1.39543 * 133.81257 * 180.02562 * 22 21 20 24 24 C 1.37722 * 119.72777 * 179.97438 * 23 22 21 25 25 C 1.38678 * 120.42110 * 0.03734 * 24 23 22 26 26 C 1.37949 * 120.47905 * 359.97438 * 25 24 23 27 27 C 1.38632 * 119.86775 * 0.02562 * 26 25 24 28 28 O 1.34229 * 124.85151 * 299.69629 * 20 18 17 29 29 C 1.52997 * 109.47164 * 59.99836 * 18 17 16 30 30 C 1.52996 * 109.47185 * 275.00149 * 14 13 11 31 31 C 1.38720 * 119.87844 * 0.27194 * 8 6 5 32 32 C 1.38137 * 119.95617 * 359.47309 * 31 8 6 33 33 H 0.96705 * 113.99863 * 300.00498 * 1 2 3 34 34 H 1.08991 * 109.46922 * 239.99932 * 2 1 3 35 35 H 1.48491 * 109.99847 * 299.99650 * 3 2 1 36 36 H 1.48494 * 110.00010 * 61.31962 * 3 2 1 37 37 H 1.08000 * 119.97334 * 0.02562 * 5 4 2 38 38 H 1.09002 * 109.47527 * 60.00094 * 10 9 8 39 39 H 1.09003 * 109.47440 * 299.99774 * 10 9 8 40 40 H 0.97002 * 119.99499 * 0.02562 * 13 11 10 41 41 H 1.09002 * 109.47398 * 300.00326 * 16 14 13 42 42 H 1.09001 * 109.47194 * 60.00507 * 16 14 13 43 43 H 1.08998 * 109.47533 * 59.99948 * 17 16 14 44 44 H 1.08996 * 109.47853 * 180.02562 * 17 16 14 45 45 H 1.08000 * 120.13800 * 0.02562 * 23 22 21 46 46 H 1.07998 * 119.78846 * 180.02562 * 24 23 22 47 47 H 1.08000 * 119.76013 * 180.02562 * 25 24 23 48 48 H 1.07996 * 120.06884 * 180.02562 * 26 25 24 49 49 H 1.09002 * 109.47045 * 180.02562 * 29 18 17 50 50 H 1.09001 * 109.47375 * 59.99966 * 29 18 17 51 51 H 1.08992 * 109.47554 * 299.99819 * 30 14 13 52 52 H 1.09004 * 109.47108 * 60.00069 * 30 14 13 53 53 H 1.07999 * 120.01724 * 179.72649 * 31 8 6 54 54 H 1.08000 * 119.96839 * 180.25713 * 32 31 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7103 1.2305 5 6 1.6840 -2.0603 1.3972 6 6 2.1441 -2.7141 2.5248 7 35 1.8051 -4.5604 2.7530 8 6 2.8544 -2.0138 3.4900 9 8 3.3076 -2.6540 4.6000 10 6 4.0305 -1.8701 5.5512 11 6 4.4507 -2.7428 6.7057 12 8 4.1594 -3.9201 6.7134 13 7 5.1504 -2.2151 7.7297 14 6 5.5583 -3.0634 8.8523 15 1 5.7940 -4.0625 8.4857 16 6 6.7947 -2.4615 9.5233 17 6 7.2212 -3.3478 10.6952 18 6 6.0803 -3.4337 11.7112 19 1 5.8445 -2.4348 12.0781 20 6 6.5002 -4.3072 12.8653 21 7 6.5677 -3.9197 14.1033 22 6 6.9818 -4.9659 14.8684 23 6 7.2263 -5.1279 16.2326 24 6 7.6487 -6.3486 16.7105 25 6 7.8330 -7.4161 15.8447 26 6 7.5953 -7.2703 14.4937 27 6 7.1697 -6.0486 13.9954 28 8 6.8523 -5.5983 12.7616 29 6 4.8441 -4.0356 11.0402 30 6 4.4174 -3.1487 9.8680 31 6 3.0955 -0.6580 3.3226 32 6 2.6380 -0.0106 2.1913 33 1 -0.3933 0.4418 0.7651 34 1 1.7923 -0.5138 -0.8899 35 1 1.5615 2.4678 -1.2085 36 1 1.5878 2.4586 1.2242 37 1 1.1316 -2.6045 0.6455 38 1 3.3939 -1.0645 5.9171 39 1 4.9152 -1.4465 5.0757 40 1 5.3831 -1.2734 7.7237 41 1 7.6075 -2.4007 8.7996 42 1 6.5590 -1.4624 9.8898 43 1 7.4569 -4.3467 10.3284 44 1 8.1016 -2.9189 11.1736 45 1 7.0840 -4.2998 16.9111 46 1 7.8378 -6.4752 17.7663 47 1 8.1641 -8.3687 16.2311 48 1 7.7406 -8.1061 13.8254 49 1 4.0312 -4.0964 11.7638 50 1 5.0799 -5.0345 10.6732 51 1 4.1817 -2.1497 10.2346 52 1 3.5366 -3.5775 9.3900 53 1 3.6441 -0.1100 4.0743 54 1 2.8291 1.0441 2.0588 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13774298_6201210.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:59:18 Heat of formation + Delta-G solvation = -33.141198 kcal Electronic energy + Delta-G solvation = -38901.670442 eV Core-core repulsion = 33625.000523 eV Total energy + Delta-G solvation = -5276.669920 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 487.087 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -44.38640 -41.70037 -40.95694 -39.68599 -39.09799 -38.69872 -37.32500 -36.03576 -35.39876 -33.61307 -32.30136 -31.93627 -31.85702 -31.69249 -30.55168 -30.06677 -28.87492 -26.36855 -25.13958 -24.24123 -23.97239 -23.87564 -23.06677 -22.48370 -22.22330 -21.57805 -21.00583 -19.57337 -18.99448 -18.58783 -18.31993 -18.13618 -17.82820 -17.47707 -17.34132 -17.10878 -16.93650 -16.37449 -16.15885 -15.83833 -15.68905 -15.60469 -15.33586 -15.20983 -15.15757 -14.97106 -14.81806 -14.70019 -14.48061 -14.10039 -13.98831 -13.78849 -13.73121 -13.58509 -13.53529 -13.32377 -13.21064 -12.62567 -12.55454 -12.49613 -12.38082 -12.36127 -12.21575 -12.20225 -12.15175 -11.88347 -11.68564 -11.60705 -11.58541 -11.41915 -11.23254 -10.93460 -10.59370 -10.13860 -9.96125 -9.88782 -9.53692 -9.32094 -4.88433 -0.39553 -0.04498 0.12951 0.14036 0.65021 1.28517 1.34170 1.38495 1.44953 1.50296 1.62433 2.02086 2.39980 2.48716 2.57989 2.63078 3.40404 3.41828 3.48178 3.54313 3.56949 3.61916 3.75660 3.77232 3.83639 3.87423 4.03276 4.05671 4.06349 4.09325 4.13053 4.13946 4.20215 4.24872 4.27628 4.30805 4.33819 4.38278 4.40659 4.57704 4.59582 4.65828 4.73538 4.85407 4.86353 4.91911 4.97452 4.98363 5.01378 5.03248 5.06984 5.15723 5.22121 5.24516 5.26112 5.27860 5.32459 5.45177 5.50609 5.64650 6.08546 6.47708 6.51232 6.51378 7.20105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.085 4.085 3 Si 0.778 3.222 4 C -0.149 4.149 5 C -0.035 4.035 6 C -0.145 4.145 7 Br -0.056 7.056 8 C 0.150 3.850 9 O -0.306 6.306 10 C 0.031 3.969 11 C 0.511 3.489 12 O -0.569 6.569 13 N -0.703 5.703 14 C 0.145 3.855 15 H 0.065 0.935 16 C -0.111 4.111 17 C -0.109 4.109 18 C 0.009 3.991 19 H 0.135 0.865 20 C 0.254 3.746 21 N -0.506 5.506 22 C -0.010 4.010 23 C -0.080 4.080 24 C -0.111 4.111 25 C -0.086 4.086 26 C -0.104 4.104 27 C -0.022 4.022 28 O -0.223 6.223 29 C -0.108 4.108 30 C -0.119 4.119 31 C -0.188 4.188 32 C -0.056 4.056 33 H 0.387 0.613 34 H 0.121 0.879 35 H -0.309 1.309 36 H -0.269 1.269 37 H 0.135 0.865 38 H 0.131 0.869 39 H 0.134 0.866 40 H 0.423 0.577 41 H 0.091 0.909 42 H 0.102 0.898 43 H 0.064 0.936 44 H 0.083 0.917 45 H 0.145 0.855 46 H 0.170 0.830 47 H 0.175 0.825 48 H 0.151 0.849 49 H 0.069 0.931 50 H 0.060 0.940 51 H 0.093 0.907 52 H 0.053 0.947 53 H 0.181 0.819 54 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.575 8.221 2.636 10.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.193 4.193 3 Si 0.682 3.318 4 C -0.151 4.151 5 C -0.055 4.055 6 C -0.225 4.225 7 Br 0.029 6.971 8 C 0.102 3.898 9 O -0.218 6.218 10 C -0.046 4.046 11 C 0.297 3.703 12 O -0.447 6.447 13 N -0.358 5.358 14 C 0.041 3.959 15 H 0.083 0.917 16 C -0.149 4.149 17 C -0.148 4.148 18 C -0.010 4.010 19 H 0.152 0.848 20 C 0.043 3.957 21 N -0.235 5.235 22 C -0.121 4.121 23 C -0.099 4.099 24 C -0.130 4.130 25 C -0.104 4.104 26 C -0.123 4.123 27 C -0.072 4.072 28 O -0.115 6.115 29 C -0.147 4.147 30 C -0.158 4.158 31 C -0.207 4.207 32 C -0.074 4.074 33 H 0.236 0.764 34 H 0.139 0.861 35 H -0.237 1.237 36 H -0.195 1.195 37 H 0.153 0.847 38 H 0.148 0.852 39 H 0.152 0.848 40 H 0.262 0.738 41 H 0.110 0.890 42 H 0.121 0.879 43 H 0.083 0.917 44 H 0.102 0.898 45 H 0.162 0.838 46 H 0.187 0.813 47 H 0.192 0.808 48 H 0.168 0.832 49 H 0.088 0.912 50 H 0.079 0.921 51 H 0.112 0.888 52 H 0.072 0.928 53 H 0.198 0.802 54 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 5.969 7.568 2.488 9.955 hybrid contribution -1.162 -0.625 0.125 1.325 sum 4.807 6.943 2.613 8.840 Atomic orbital electron populations 1.86597 1.18683 1.80445 1.50195 1.25325 0.83382 1.12456 0.98132 0.94089 0.89865 0.71045 0.76787 1.20280 1.02588 0.93573 0.98631 1.20885 0.95756 0.94486 0.94400 1.21282 1.09838 0.91863 0.99543 1.96762 1.94950 1.07674 1.97709 1.18813 0.93194 0.91749 0.86078 1.86252 1.68690 1.37972 1.28926 1.22889 0.99726 0.93674 0.88313 1.20530 0.77948 0.87972 0.83806 1.90799 1.55426 1.18829 1.79610 1.45674 1.55939 1.14491 1.19662 1.20983 0.94452 0.94978 0.85509 0.91690 1.21720 0.96344 1.00137 0.96654 1.21558 0.96688 1.01599 0.94928 1.20205 0.96664 0.96472 0.87690 0.84771 1.27064 0.93410 0.80254 0.94975 1.70615 1.20986 1.29963 1.01983 1.20310 1.05159 0.89737 0.96866 1.20678 0.98762 0.99697 0.90775 1.21529 0.98085 0.91214 1.02192 1.21543 0.97093 1.00955 0.90782 1.20336 1.01698 0.93227 0.97043 1.20829 1.05362 0.98479 0.82517 1.84466 1.68994 1.27315 1.30695 1.21520 0.96032 0.99576 0.97570 1.21837 0.98031 1.01236 0.94703 1.21564 1.06033 0.91460 1.01683 1.21294 0.93569 1.00872 0.91616 0.76408 0.86079 1.23718 1.19508 0.84667 0.85155 0.84832 0.73814 0.89025 0.87913 0.91684 0.89807 0.83764 0.81288 0.80751 0.83164 0.91239 0.92103 0.88803 0.92809 0.80198 0.81861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.67 12.83 -148.98 -1.91 -2.58 16 2 C -0.08 0.24 2.80 71.23 0.20 0.44 16 3 Si 0.78 -4.57 29.88 68.60 2.05 -2.52 16 4 C -0.15 0.34 5.35 -19.85 -0.11 0.23 16 5 C -0.04 -0.09 9.42 22.27 0.21 0.12 16 6 C -0.15 -0.77 6.24 22.40 0.14 -0.63 16 7 Br -0.06 -0.54 33.16 -20.37 -0.68 -1.21 16 8 C 0.15 0.23 6.68 22.52 0.15 0.38 16 9 O -0.31 -1.16 9.00 -73.62 -0.66 -1.82 16 10 C 0.03 -0.21 5.22 71.24 0.37 0.17 16 11 C 0.51 -0.05 7.87 87.66 0.69 0.64 16 12 O -0.57 -7.18 16.16 16.01 0.26 -6.92 16 13 N -0.70 5.48 5.08 -442.53 -2.25 3.24 16 14 C 0.15 -0.67 2.45 44.99 0.11 -0.56 16 15 H 0.06 0.13 7.58 -2.39 -0.02 0.11 16 16 C -0.11 1.08 5.39 30.59 0.16 1.24 16 17 C -0.11 0.53 5.19 30.60 0.16 0.68 16 18 C 0.01 -0.01 2.66 -11.54 -0.03 -0.04 16 19 H 0.13 -0.62 8.14 -2.39 -0.02 -0.64 16 20 C 0.25 1.74 6.74 88.40 0.60 2.33 16 21 N -0.51 -5.44 11.34 -296.28 -3.36 -8.80 16 22 C -0.01 -0.10 7.24 39.31 0.28 0.18 16 23 C -0.08 -0.36 10.10 22.46 0.23 -0.13 16 24 C -0.11 0.12 10.02 22.25 0.22 0.34 16 25 C -0.09 0.14 10.03 22.31 0.22 0.36 16 26 C -0.10 -0.32 10.06 22.30 0.22 -0.10 16 27 C -0.02 -0.20 7.43 22.88 0.17 -0.03 16 28 O -0.22 -2.12 10.77 -10.01 -0.11 -2.23 16 29 C -0.11 0.07 5.19 30.61 0.16 0.23 16 30 C -0.12 0.38 5.50 30.61 0.17 0.55 16 31 C -0.19 1.20 9.04 22.36 0.20 1.41 16 32 C -0.06 0.37 8.66 22.26 0.19 0.56 16 33 H 0.39 -1.84 8.70 -74.05 -0.64 -2.48 16 34 H 0.12 -0.43 7.96 -2.39 -0.02 -0.45 16 35 H -0.31 -0.99 7.11 99.48 0.71 -0.28 16 36 H -0.27 1.10 7.00 99.48 0.70 1.80 16 37 H 0.14 0.41 8.06 -2.91 -0.02 0.39 16 38 H 0.13 -1.77 7.65 -2.39 -0.02 -1.79 16 39 H 0.13 -1.87 7.67 -2.39 -0.02 -1.89 16 40 H 0.42 -6.91 8.60 -92.71 -0.80 -7.71 16 41 H 0.09 -1.01 8.14 -2.39 -0.02 -1.03 16 42 H 0.10 -1.45 8.14 -2.39 -0.02 -1.47 16 43 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 44 H 0.08 -0.43 8.14 -2.39 -0.02 -0.45 16 45 H 0.14 0.24 8.06 -2.91 -0.02 0.21 16 46 H 0.17 -1.29 8.06 -2.91 -0.02 -1.31 16 47 H 0.18 -1.50 8.06 -2.91 -0.02 -1.52 16 48 H 0.15 -0.13 8.06 -2.91 -0.02 -0.16 16 49 H 0.07 0.04 8.14 -2.39 -0.02 0.02 16 50 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 51 H 0.09 -0.70 8.14 -2.39 -0.02 -0.72 16 52 H 0.05 0.13 8.14 -2.38 -0.02 0.11 16 53 H 0.18 -2.69 6.30 -2.91 -0.02 -2.71 16 54 H 0.16 -1.98 4.83 -2.91 -0.01 -1.99 16 Total: 0.00 -36.08 464.45 -2.36 -38.44 By element: Atomic # 1 Polarization: -23.53 SS G_CDS: -0.44 Total: -23.97 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: 4.73 Total: 8.37 kcal Atomic # 7 Polarization: 0.04 SS G_CDS: -5.61 Total: -5.57 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: -2.42 Total: -13.55 kcal Atomic # 14 Polarization: -4.57 SS G_CDS: 2.05 Total: -2.52 kcal Atomic # 35 Polarization: -0.54 SS G_CDS: -0.68 Total: -1.21 kcal Total: -36.08 -2.36 -38.44 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13774298_6201210.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.303 kcal (2) G-P(sol) polarization free energy of solvation -36.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds