Wall clock time and date at job start Tue Mar 9 2021 12:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47084 * 2 1 4 4 C 1.52998 * 109.47174 * 240.00095 * 2 1 3 5 5 O 1.45200 * 109.47338 * 119.99939 * 2 1 3 6 6 C 1.34226 * 116.99857 * 59.99893 * 5 2 1 7 7 O 1.20829 * 120.00041 * 359.97438 * 6 5 2 8 8 C 1.50696 * 120.00155 * 180.02562 * 6 5 2 9 9 H 1.09001 * 109.47613 * 60.00151 * 8 6 5 10 10 C 1.52997 * 109.47648 * 180.02562 * 8 6 5 11 11 C 1.52998 * 109.47596 * 179.97438 * 10 8 6 12 12 C 1.52992 * 109.47384 * 299.99998 * 11 10 8 13 13 H 1.09002 * 109.47576 * 300.00157 * 12 11 10 14 14 C 1.52998 * 109.47414 * 179.97438 * 12 11 10 15 15 N 1.46504 * 109.47416 * 175.00257 * 14 12 11 16 16 C 1.34771 * 120.00161 * 180.02562 * 15 14 12 17 17 O 1.21616 * 120.00088 * 359.97438 * 16 15 14 18 18 C 1.47386 * 119.99902 * 179.97438 * 16 15 14 19 19 C 1.36414 * 127.19142 * 0.02931 * 18 16 15 20 20 O 1.33654 * 108.39300 * 179.73196 * 19 18 16 21 21 C 1.34207 * 110.90909 * 0.40912 * 20 19 18 22 22 C 1.50706 * 125.43915 * 179.85044 * 21 20 19 23 23 O 1.42895 * 109.47147 * 119.69084 * 22 21 20 24 24 Si 1.86299 * 109.46748 * 359.69442 * 22 21 20 25 25 C 1.34178 * 109.12422 * 359.58508 * 21 20 19 26 26 C 1.53005 * 109.47009 * 59.99851 * 12 11 10 27 27 C 1.52998 * 109.47169 * 300.00280 * 26 12 11 28 28 H 1.09003 * 109.47525 * 299.99701 * 1 2 3 29 29 H 1.08997 * 109.47346 * 60.00031 * 1 2 3 30 30 H 1.08994 * 109.47060 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47434 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47478 * 300.00417 * 3 2 1 33 33 H 1.09005 * 109.47431 * 59.99830 * 3 2 1 34 34 H 1.08994 * 109.46901 * 299.99821 * 4 2 1 35 35 H 1.08997 * 109.47087 * 59.99715 * 4 2 1 36 36 H 1.09004 * 109.46883 * 179.97438 * 4 2 1 37 37 H 1.09003 * 109.47272 * 59.99433 * 10 8 6 38 38 H 1.09004 * 109.47258 * 299.99998 * 10 8 6 39 39 H 1.09003 * 109.46869 * 179.97438 * 11 10 8 40 40 H 1.09002 * 109.46892 * 60.00573 * 11 10 8 41 41 H 1.09001 * 109.46847 * 55.00055 * 14 12 11 42 42 H 1.09005 * 109.47034 * 295.00405 * 14 12 11 43 43 H 0.97001 * 119.99574 * 359.97438 * 15 14 12 44 44 H 1.08003 * 125.80076 * 0.02562 * 19 18 16 45 45 H 1.09001 * 109.46740 * 239.69483 * 22 21 20 46 46 H 0.96700 * 114.00205 * 179.97438 * 23 22 21 47 47 H 1.48504 * 110.00088 * 298.67875 * 24 22 21 48 48 H 1.48494 * 110.00213 * 59.99753 * 24 22 21 49 49 H 1.08006 * 127.01858 * 180.24041 * 25 21 20 50 50 H 1.08995 * 109.47112 * 59.99744 * 26 12 11 51 51 H 1.09004 * 109.47515 * 180.02562 * 26 12 11 52 52 H 1.09009 * 109.47206 * 299.99971 * 27 26 12 53 53 H 1.08995 * 109.47467 * 179.97438 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1855 6 6 1.6534 -1.9684 1.3379 7 8 0.9559 -2.5025 0.5083 8 6 2.1174 -2.7434 2.5441 9 1 1.7532 -2.2584 3.4498 10 6 1.5710 -4.1707 2.4745 11 6 2.0426 -4.9578 3.6988 12 6 3.5718 -4.9977 3.7214 13 1 3.9362 -5.4823 2.8156 14 6 4.0435 -5.7842 4.9461 15 7 5.5011 -5.9248 4.9047 16 6 6.1426 -6.5867 5.8879 17 8 5.5114 -7.0668 6.8099 18 6 7.6090 -6.7285 5.8459 19 6 8.4565 -6.2516 4.8892 20 8 9.7052 -6.5888 5.2259 21 6 9.7205 -7.2844 6.3736 22 6 10.9528 -7.8286 7.0492 23 8 11.0731 -7.2565 8.3531 24 14 12.4572 -7.3947 6.0396 25 6 8.4640 -7.4130 6.8265 26 6 4.1183 -3.5703 3.7912 27 6 3.6467 -2.7833 2.5668 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6766 1.9564 0.8900 34 1 1.6767 -1.7488 -1.2492 35 1 1.6766 -0.2074 -2.1392 36 1 3.1300 -0.7208 -1.2494 37 1 1.9355 -4.6556 1.5688 38 1 0.4814 -4.1424 2.4579 39 1 1.6529 -5.9746 3.6493 40 1 1.6783 -4.4732 4.6046 41 1 3.5829 -6.7721 4.9429 42 1 3.7554 -5.2520 5.8528 43 1 6.0045 -5.5421 4.1691 44 1 8.1679 -5.6921 4.0116 45 1 10.8722 -8.9123 7.1338 46 1 11.8459 -7.5626 8.8472 47 1 12.3592 -8.0103 4.6917 48 1 12.5784 -5.9198 5.9167 49 1 8.1459 -7.9167 7.7274 50 1 3.7540 -3.0856 4.6969 51 1 5.2078 -3.5986 3.8068 52 1 4.0109 -3.2679 1.6609 53 1 4.0356 -1.7663 2.6167 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14037210_13456056.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:55:24 Heat of formation + Delta-G solvation = -153.099348 kcal Electronic energy + Delta-G solvation = -33149.434868 eV Core-core repulsion = 28567.944119 eV Total energy + Delta-G solvation = -4581.490750 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 366.197 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.85529 -42.08679 -40.81212 -39.60505 -37.99141 -37.90160 -36.02857 -35.09100 -34.18269 -32.81972 -31.88815 -31.65305 -28.44704 -28.35837 -27.95170 -26.56562 -25.13302 -23.85209 -23.72848 -22.34554 -22.04310 -21.21425 -20.61030 -20.48967 -19.05229 -18.65077 -18.25484 -17.62997 -17.47140 -17.27216 -17.19104 -16.99973 -16.38611 -16.03353 -15.88723 -15.77749 -15.51872 -15.21253 -15.03108 -14.95562 -14.78490 -14.58219 -14.29285 -14.20187 -13.91043 -13.80966 -13.62997 -13.44776 -13.27798 -13.17393 -13.01303 -12.95257 -12.91429 -12.70991 -12.53926 -12.36794 -12.16568 -12.12680 -12.07118 -11.72776 -11.49349 -11.43163 -11.29624 -11.11078 -11.07356 -10.87388 -10.52015 -10.23422 -9.84433 -5.03201 0.13310 0.71593 1.16623 1.19039 1.51664 1.66013 1.69937 1.99689 2.01857 2.17161 3.29388 3.39223 3.42022 3.56719 3.64090 3.66835 3.68888 3.73957 3.81361 3.85078 3.90297 3.95348 4.11518 4.22870 4.28925 4.35789 4.37174 4.42452 4.43672 4.48648 4.51970 4.53411 4.62744 4.69466 4.70955 4.76061 4.77504 4.81636 4.83168 4.85081 4.95151 5.04573 5.06189 5.06956 5.09831 5.14777 5.18307 5.19916 5.23037 5.26868 5.32621 5.46869 5.55203 5.71854 6.39391 6.78160 6.82528 7.07123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.107 3.893 3 C -0.138 4.138 4 C -0.179 4.179 5 O -0.355 6.355 6 C 0.464 3.536 7 O -0.528 6.528 8 C -0.079 4.079 9 H 0.119 0.881 10 C -0.097 4.097 11 C -0.108 4.108 12 C -0.091 4.091 13 H 0.090 0.910 14 C 0.126 3.874 15 N -0.707 5.707 16 C 0.587 3.413 17 O -0.583 6.583 18 C -0.263 4.263 19 C 0.055 3.945 20 O -0.185 6.185 21 C -0.029 4.029 22 C -0.049 4.049 23 O -0.563 6.563 24 Si 0.818 3.182 25 C -0.145 4.145 26 C -0.111 4.111 27 C -0.103 4.103 28 H 0.063 0.937 29 H 0.085 0.915 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.084 0.916 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.415 0.585 44 H 0.262 0.738 45 H 0.119 0.881 46 H 0.414 0.586 47 H -0.288 1.288 48 H -0.302 1.302 49 H 0.152 0.848 50 H 0.072 0.928 51 H 0.082 0.918 52 H 0.069 0.931 53 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.979 1.744 -2.167 6.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.072 3.928 3 C -0.195 4.195 4 C -0.236 4.236 5 O -0.272 6.272 6 C 0.308 3.692 7 O -0.417 6.417 8 C -0.098 4.098 9 H 0.137 0.863 10 C -0.134 4.134 11 C -0.146 4.146 12 C -0.109 4.109 13 H 0.108 0.892 14 C 0.003 3.997 15 N -0.360 5.360 16 C 0.375 3.625 17 O -0.465 6.465 18 C -0.268 4.268 19 C -0.015 4.015 20 O -0.081 6.081 21 C -0.077 4.077 22 C -0.157 4.157 23 O -0.375 6.375 24 Si 0.722 3.278 25 C -0.165 4.165 26 C -0.148 4.148 27 C -0.141 4.141 28 H 0.082 0.918 29 H 0.103 0.897 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.112 0.888 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.103 0.897 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.252 0.748 44 H 0.278 0.722 45 H 0.137 0.863 46 H 0.267 0.733 47 H -0.215 1.215 48 H -0.230 1.230 49 H 0.170 0.830 50 H 0.090 0.910 51 H 0.101 0.899 52 H 0.088 0.912 53 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.323 2.028 -2.826 6.359 hybrid contribution -1.152 0.043 -0.269 1.184 sum 4.171 2.072 -3.095 5.592 Atomic orbital electron populations 1.22462 0.94229 1.03504 1.03627 1.22411 0.94378 0.93322 0.82734 1.21874 1.02455 0.91211 1.03994 1.22445 1.01851 1.01993 0.97339 1.86555 1.69672 1.25398 1.45564 1.24192 0.76609 0.80617 0.87778 1.90589 1.36340 1.70456 1.44343 1.21260 0.99071 0.95421 0.94087 0.86287 1.21349 1.00714 0.92267 0.99098 1.21478 0.94068 1.01036 0.97979 1.21385 0.96231 0.96017 0.97296 0.89167 1.21452 0.78693 1.00426 0.99160 1.45683 1.08700 1.56150 1.25442 1.17396 0.85724 0.77522 0.81821 1.90791 1.68738 1.50381 1.36553 1.21557 0.94081 1.10841 1.00278 1.25318 0.79228 0.97193 0.99721 1.83726 1.31379 1.56690 1.36351 1.21713 0.96901 1.00987 0.88073 1.24140 1.00759 1.00299 0.90468 1.86411 1.53522 1.70887 1.26719 0.93979 0.79572 0.77457 0.76803 1.22598 0.91076 1.02442 1.00363 1.21622 1.01479 0.93843 0.97876 1.21481 0.90934 1.02100 0.99586 0.91819 0.89658 0.91939 0.91099 0.88845 0.91310 0.91931 0.89744 0.91583 0.91620 0.91753 0.90616 0.90651 0.92049 0.91841 0.74778 0.72218 0.86332 0.73304 1.21503 1.22996 0.82996 0.90965 0.89901 0.91228 0.90084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.42 8.37 71.98 0.60 0.19 16 2 C 0.11 0.18 1.13 -10.79 -0.01 0.17 16 3 C -0.14 0.36 8.85 71.98 0.64 1.00 16 4 C -0.18 -0.30 8.37 71.98 0.60 0.30 16 5 O -0.35 -1.18 9.79 -51.38 -0.50 -1.68 16 6 C 0.46 1.66 6.56 71.23 0.47 2.13 16 7 O -0.53 -4.64 11.48 21.95 0.25 -4.39 16 8 C -0.08 0.20 2.63 -11.54 -0.03 0.17 16 9 H 0.12 -0.54 8.14 -2.39 -0.02 -0.56 16 10 C -0.10 0.21 4.49 30.59 0.14 0.35 16 11 C -0.11 0.55 5.20 30.59 0.16 0.71 16 12 C -0.09 0.60 2.23 -10.80 -0.02 0.58 16 13 H 0.09 -0.70 8.14 -2.39 -0.02 -0.72 16 14 C 0.13 -0.22 5.06 86.38 0.44 0.21 16 15 N -0.71 1.18 5.27 -466.40 -2.46 -1.28 16 16 C 0.59 4.37 7.81 86.65 0.68 5.05 16 17 O -0.58 -10.07 16.98 -4.08 -0.07 -10.14 16 18 C -0.26 -1.45 6.31 -18.99 -0.12 -1.57 16 19 C 0.06 -0.07 11.61 67.39 0.78 0.72 16 20 O -0.18 -0.76 8.89 4.53 0.04 -0.72 16 21 C -0.03 -0.16 6.24 24.76 0.15 -0.01 16 22 C -0.05 0.06 2.97 71.24 0.21 0.27 16 23 O -0.56 0.50 12.84 -148.98 -1.91 -1.41 16 24 Si 0.82 -2.83 32.09 68.60 2.20 -0.63 16 25 C -0.14 -1.23 10.88 23.65 0.26 -0.97 16 26 C -0.11 0.87 5.08 30.60 0.16 1.03 16 27 C -0.10 0.60 5.13 30.59 0.16 0.76 16 28 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 29 H 0.08 -0.05 8.14 -2.39 -0.02 -0.07 16 30 H 0.06 0.43 5.89 -2.39 -0.01 0.42 16 31 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 32 H 0.09 -0.50 8.14 -2.39 -0.02 -0.52 16 33 H 0.07 -0.18 8.14 -2.38 -0.02 -0.20 16 34 H 0.06 0.39 5.89 -2.39 -0.01 0.38 16 35 H 0.08 -0.09 8.14 -2.39 -0.02 -0.11 16 36 H 0.07 0.04 8.14 -2.39 -0.02 0.02 16 37 H 0.07 -0.02 8.10 -2.39 -0.02 -0.04 16 38 H 0.06 0.02 8.10 -2.39 -0.02 0.00 16 39 H 0.08 -0.36 8.14 -2.39 -0.02 -0.38 16 40 H 0.07 -0.41 8.14 -2.39 -0.02 -0.43 16 41 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 42 H 0.06 0.05 8.14 -2.38 -0.02 0.03 16 43 H 0.41 -3.78 6.63 -92.71 -0.61 -4.39 16 44 H 0.26 -3.41 7.47 -2.91 -0.02 -3.43 16 45 H 0.12 -0.76 7.96 -2.39 -0.02 -0.78 16 46 H 0.41 -5.23 8.74 -74.06 -0.65 -5.88 16 47 H -0.29 -0.66 7.11 99.48 0.71 0.05 16 48 H -0.30 -1.56 7.11 99.48 0.71 -0.85 16 49 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 50 H 0.07 -0.50 8.14 -2.39 -0.02 -0.52 16 51 H 0.08 -0.86 7.18 -2.39 -0.02 -0.87 16 52 H 0.07 -0.38 8.14 -2.38 -0.02 -0.40 16 53 H 0.08 -0.45 8.11 -2.39 -0.02 -0.47 16 Total: 0.00 -30.02 424.74 2.49 -27.52 By element: Atomic # 1 Polarization: -18.04 SS G_CDS: -0.31 Total: -18.34 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: 5.25 Total: 11.07 kcal Atomic # 7 Polarization: 1.18 SS G_CDS: -2.46 Total: -1.28 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -2.19 Total: -18.34 kcal Atomic # 14 Polarization: -2.83 SS G_CDS: 2.20 Total: -0.63 kcal Total: -30.02 2.49 -27.52 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14037210_13456056.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.578 kcal (2) G-P(sol) polarization free energy of solvation -30.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds