Wall clock time and date at job start Tue Mar 9 2021 12:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46761 * 2 1 4 4 C 1.52995 * 109.47612 * 239.99822 * 2 1 3 5 5 O 1.45198 * 109.47093 * 119.99589 * 2 1 3 6 6 C 1.34230 * 116.99776 * 59.99859 * 5 2 1 7 7 O 1.20831 * 120.00246 * 0.02562 * 6 5 2 8 8 C 1.50706 * 120.00139 * 179.97438 * 6 5 2 9 9 H 1.09000 * 109.46974 * 300.00495 * 8 6 5 10 10 C 1.52997 * 109.46909 * 60.00296 * 8 6 5 11 11 C 1.52996 * 109.47165 * 180.02562 * 10 8 6 12 12 C 1.53002 * 109.46972 * 300.00293 * 11 10 8 13 13 H 1.09001 * 109.47601 * 180.02562 * 12 11 10 14 14 N 1.46507 * 109.46688 * 299.99809 * 12 11 10 15 15 C 1.34778 * 119.99972 * 274.99840 * 14 12 11 16 16 O 1.21692 * 119.99988 * 359.97438 * 15 14 12 17 17 C 1.46680 * 119.99967 * 180.02562 * 15 14 12 18 18 C 1.37867 * 126.23441 * 180.02562 * 17 15 14 19 19 C 1.39835 * 107.08768 * 179.97438 * 18 17 15 20 20 C 1.50697 * 126.06985 * 179.97438 * 19 18 17 21 21 O 1.42900 * 109.47133 * 65.00056 * 20 19 18 22 22 Si 1.86296 * 109.47129 * 185.00093 * 20 19 18 23 23 C 1.35459 * 107.86082 * 0.02562 * 19 18 17 24 24 N 1.35527 * 108.87057 * 359.76390 * 23 19 18 25 25 C 1.52997 * 109.47415 * 59.99860 * 12 11 10 26 26 C 1.52999 * 109.46957 * 180.02562 * 8 6 5 27 27 H 1.08994 * 109.47403 * 300.00318 * 1 2 3 28 28 H 1.08999 * 109.46845 * 60.00297 * 1 2 3 29 29 H 1.08996 * 109.46737 * 180.02562 * 1 2 3 30 30 H 1.09011 * 109.46967 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47198 * 299.99487 * 3 2 1 32 32 H 1.09003 * 109.47564 * 60.00324 * 3 2 1 33 33 H 1.09001 * 109.47033 * 300.00749 * 4 2 1 34 34 H 1.09009 * 109.46645 * 59.99795 * 4 2 1 35 35 H 1.08995 * 109.47628 * 179.97438 * 4 2 1 36 36 H 1.09000 * 109.47140 * 60.00301 * 10 8 6 37 37 H 1.09001 * 109.47375 * 300.00283 * 10 8 6 38 38 H 1.08992 * 109.47534 * 180.02562 * 11 10 8 39 39 H 1.08996 * 109.47134 * 59.99508 * 11 10 8 40 40 H 0.96998 * 119.99855 * 95.00714 * 14 12 11 41 41 H 1.07999 * 126.45583 * 359.97438 * 18 17 15 42 42 H 1.09001 * 109.47226 * 305.00249 * 20 19 18 43 43 H 0.96694 * 114.00115 * 59.99511 * 21 20 19 44 44 H 1.48503 * 109.99997 * 179.97438 * 22 20 19 45 45 H 1.48496 * 110.00112 * 301.31972 * 22 20 19 46 46 H 1.07995 * 125.55747 * 180.02562 * 23 19 18 47 47 H 0.97002 * 125.67541 * 180.26495 * 24 23 19 48 48 H 1.09001 * 109.46922 * 180.02562 * 25 12 11 49 49 H 1.09000 * 109.47140 * 59.99976 * 25 12 11 50 50 H 1.08993 * 109.47839 * 60.00178 * 26 8 6 51 51 H 1.09000 * 109.47160 * 299.99740 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2491 5 8 2.0140 -0.6844 1.1856 6 6 1.6533 -1.9683 1.3380 7 8 0.9566 -2.5027 0.5079 8 6 2.1182 -2.7436 2.5438 9 1 3.2077 -2.7725 2.5592 10 6 1.6080 -2.0630 3.8155 11 6 2.0805 -2.8497 5.0396 12 6 1.5339 -4.2771 4.9706 13 1 1.8701 -4.8376 5.8430 14 7 0.0695 -4.2387 4.9502 15 6 -0.6191 -4.1689 6.1067 16 8 -0.0244 -4.1382 7.1680 17 6 -2.0852 -4.1310 6.0862 18 6 -2.9140 -4.0595 7.1856 19 6 -4.2286 -4.0455 6.7090 20 6 -5.4767 -3.9749 7.5505 21 8 -5.5200 -2.7207 8.2340 22 14 -6.9745 -4.1369 6.4545 23 6 -4.1809 -4.1080 5.3567 24 7 -2.8841 -4.1554 4.9655 25 6 2.0441 -4.9578 3.6989 26 6 1.5715 -4.1709 2.4741 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1301 1.4426 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6767 -1.7489 -1.2492 34 1 1.6768 -0.2074 -2.1392 35 1 3.1301 -0.7208 -1.2494 36 1 0.5185 -2.0341 3.8000 37 1 1.9978 -1.0463 3.8648 38 1 1.7167 -2.3652 5.9456 39 1 3.1700 -2.8784 5.0548 40 1 -0.4045 -4.2636 4.1042 41 1 -2.6060 -4.0214 8.2201 42 1 -5.4702 -4.7857 8.2790 43 1 -5.5280 -1.9527 7.6466 44 1 -8.2121 -4.0694 7.2725 45 1 -6.9783 -3.0557 5.4366 46 1 -5.0365 -4.1143 4.6977 47 1 -2.5712 -4.2004 4.0485 48 1 1.6542 -5.9745 3.6496 49 1 3.1336 -4.9863 3.7142 50 1 1.9352 -4.6557 1.5682 51 1 0.4820 -4.1423 2.4585 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14048278_10543058.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:59:37 Heat of formation + Delta-G solvation = -117.207485 kcal Electronic energy + Delta-G solvation = -32370.305808 eV Core-core repulsion = 28043.627727 eV Total energy + Delta-G solvation = -4326.678081 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 351.192 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.54026 -42.10061 -40.84700 -39.13806 -37.89633 -37.79769 -35.33962 -34.75226 -32.67848 -31.90392 -31.57419 -30.31680 -28.44182 -28.36489 -26.62182 -25.57980 -24.26757 -23.79403 -22.49517 -21.36778 -20.92143 -20.64813 -20.19205 -20.06441 -18.28621 -17.74450 -17.58293 -17.24761 -17.15410 -16.67307 -16.51110 -16.12307 -15.92437 -15.65792 -15.43122 -15.20917 -15.07490 -14.80491 -14.68819 -14.48784 -14.44859 -14.02920 -13.87286 -13.62913 -13.55232 -13.45408 -13.34910 -13.24270 -13.07923 -12.98422 -12.91925 -12.49977 -12.46239 -12.29965 -12.23482 -11.89320 -11.81874 -11.60973 -11.42760 -11.38859 -11.29512 -10.88129 -10.49036 -10.24770 -9.98023 -9.30686 -4.84439 0.36308 1.15404 1.38549 1.54403 1.64988 1.67071 1.94724 2.08234 2.13600 2.26806 3.40028 3.53815 3.55655 3.61847 3.67624 3.73253 3.78295 3.89264 3.93745 3.98512 4.02381 4.07042 4.14143 4.29250 4.35370 4.37413 4.39250 4.51759 4.53847 4.58733 4.69703 4.71626 4.74891 4.76836 4.81061 4.85633 4.87280 4.95920 5.00666 5.02903 5.05642 5.07339 5.12620 5.18394 5.20801 5.22487 5.26008 5.42052 5.54797 5.58178 5.73055 6.32539 6.48425 6.61809 6.77024 7.06296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.108 3.892 3 C -0.141 4.141 4 C -0.180 4.180 5 O -0.357 6.357 6 C 0.465 3.535 7 O -0.522 6.522 8 C -0.078 4.078 9 H 0.127 0.873 10 C -0.100 4.100 11 C -0.125 4.125 12 C 0.142 3.858 13 H 0.081 0.919 14 N -0.710 5.710 15 C 0.589 3.411 16 O -0.572 6.572 17 C -0.070 4.070 18 C -0.103 4.103 19 C -0.222 4.222 20 C -0.060 4.060 21 O -0.557 6.557 22 Si 0.787 3.213 23 C 0.057 3.943 24 N -0.518 5.518 25 C -0.117 4.117 26 C -0.100 4.100 27 H 0.061 0.939 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.076 0.924 38 H 0.053 0.947 39 H 0.095 0.905 40 H 0.405 0.595 41 H 0.125 0.875 42 H 0.109 0.891 43 H 0.384 0.616 44 H -0.312 1.312 45 H -0.269 1.269 46 H 0.211 0.789 47 H 0.434 0.566 48 H 0.086 0.914 49 H 0.101 0.899 50 H 0.079 0.921 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.664 -0.955 -8.039 8.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.072 3.928 3 C -0.197 4.197 4 C -0.237 4.237 5 O -0.274 6.274 6 C 0.309 3.691 7 O -0.411 6.411 8 C -0.097 4.097 9 H 0.145 0.855 10 C -0.138 4.138 11 C -0.164 4.164 12 C 0.038 3.962 13 H 0.099 0.901 14 N -0.362 5.362 15 C 0.378 3.622 16 O -0.451 6.451 17 C -0.182 4.182 18 C -0.130 4.130 19 C -0.228 4.228 20 C -0.168 4.168 21 O -0.365 6.365 22 Si 0.691 3.309 23 C -0.081 4.081 24 N -0.115 5.115 25 C -0.154 4.154 26 C -0.138 4.138 27 H 0.080 0.920 28 H 0.103 0.897 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.112 0.888 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.103 0.897 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.094 0.906 38 H 0.072 0.928 39 H 0.114 0.886 40 H 0.242 0.758 41 H 0.143 0.857 42 H 0.127 0.873 43 H 0.233 0.767 44 H -0.241 1.241 45 H -0.195 1.195 46 H 0.228 0.772 47 H 0.275 0.725 48 H 0.104 0.896 49 H 0.119 0.881 50 H 0.098 0.902 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.324 -1.080 -7.509 7.593 hybrid contribution 0.220 1.286 -0.203 1.321 sum 0.544 0.207 -7.712 7.734 Atomic orbital electron populations 1.22452 0.93979 1.03729 1.03507 1.22399 0.94525 0.93136 0.82691 1.21888 1.02411 0.91520 1.03927 1.22458 1.01787 1.02183 0.97297 1.86565 1.69714 1.25590 1.45567 1.24084 0.76827 0.80602 0.87558 1.90580 1.36133 1.70231 1.44184 1.21243 1.04158 0.94504 0.89745 0.85525 1.21385 1.00812 0.99594 0.91993 1.21890 1.02389 0.94878 0.97212 1.21091 0.78432 0.96712 0.99921 0.90120 1.45918 1.07842 1.74642 1.07793 1.17217 0.85223 0.75652 0.84150 1.90845 1.70102 1.52289 1.31871 1.20219 0.90283 1.19916 0.87831 1.21225 0.92453 1.01814 0.97557 1.19866 0.94900 1.14061 0.93990 1.24741 1.02683 0.87756 1.01649 1.86569 1.95867 1.16180 1.37878 0.94240 0.71699 0.87709 0.77291 1.22360 0.87132 1.03276 0.95366 1.41881 1.05760 1.55408 1.08423 1.21831 1.03262 0.99257 0.91096 1.21424 1.01171 0.91975 0.99183 0.92017 0.89741 0.91417 0.91279 0.88829 0.91445 0.91525 0.89736 0.91814 0.92291 0.90550 0.92799 0.88614 0.75812 0.85666 0.87305 0.76727 1.24110 1.19475 0.77221 0.72524 0.89579 0.88055 0.90216 0.91399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.01 8.37 71.98 0.60 0.60 16 2 C 0.11 0.03 1.13 -10.79 -0.01 0.02 16 3 C -0.14 0.43 8.85 71.98 0.64 1.07 16 4 C -0.18 -0.04 8.37 71.98 0.60 0.56 16 5 O -0.36 -0.70 9.79 -51.41 -0.50 -1.21 16 6 C 0.46 0.41 6.57 71.24 0.47 0.88 16 7 O -0.52 -2.39 11.48 21.95 0.25 -2.14 16 8 C -0.08 0.37 2.63 -11.54 -0.03 0.34 16 9 H 0.13 -0.94 8.14 -2.39 -0.02 -0.96 16 10 C -0.10 0.37 4.98 30.59 0.15 0.52 16 11 C -0.13 0.35 5.60 30.59 0.17 0.52 16 12 C 0.14 -0.43 2.78 44.99 0.13 -0.31 16 13 H 0.08 0.08 7.57 -2.39 -0.02 0.06 16 14 N -0.71 1.65 4.23 -446.48 -1.89 -0.24 16 15 C 0.59 3.24 7.75 86.45 0.67 3.91 16 16 O -0.57 -8.33 16.54 -4.32 -0.07 -8.40 16 17 C -0.07 -0.21 7.06 40.35 0.28 0.07 16 18 C -0.10 -0.68 10.59 22.57 0.24 -0.44 16 19 C -0.22 -0.21 5.43 -20.12 -0.11 -0.31 16 20 C -0.06 -0.06 3.02 71.23 0.22 0.16 16 21 O -0.56 -3.01 12.88 -148.98 -1.92 -4.93 16 22 Si 0.79 -2.95 30.60 68.60 2.10 -0.85 16 23 C 0.06 -0.30 10.45 83.48 0.87 0.57 16 24 N -0.52 2.73 5.99 -183.63 -1.10 1.63 16 25 C -0.12 0.94 5.61 30.61 0.17 1.11 16 26 C -0.10 0.66 4.33 30.61 0.13 0.80 16 27 H 0.06 -0.01 8.14 -2.39 -0.02 -0.03 16 28 H 0.08 -0.21 8.14 -2.39 -0.02 -0.23 16 29 H 0.07 0.23 5.89 -2.39 -0.01 0.21 16 30 H 0.07 -0.21 8.14 -2.38 -0.02 -0.23 16 31 H 0.09 -0.55 8.14 -2.39 -0.02 -0.57 16 32 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 33 H 0.07 0.27 5.89 -2.39 -0.01 0.25 16 34 H 0.08 -0.20 8.14 -2.38 -0.02 -0.22 16 35 H 0.06 -0.01 8.14 -2.39 -0.02 -0.03 16 36 H 0.06 -0.14 7.61 -2.39 -0.02 -0.16 16 37 H 0.08 -0.20 8.11 -2.39 -0.02 -0.22 16 38 H 0.05 0.15 8.14 -2.39 -0.02 0.13 16 39 H 0.10 -0.55 8.14 -2.39 -0.02 -0.57 16 40 H 0.40 -3.01 6.00 -92.71 -0.56 -3.57 16 41 H 0.13 1.33 8.06 -2.91 -0.02 1.31 16 42 H 0.11 0.14 7.96 -2.39 -0.02 0.12 16 43 H 0.38 -0.34 8.70 -74.06 -0.64 -0.99 16 44 H -0.31 -1.71 7.11 99.48 0.71 -1.01 16 45 H -0.27 0.61 7.11 99.48 0.71 1.31 16 46 H 0.21 -2.67 6.21 -2.91 -0.02 -2.69 16 47 H 0.43 -5.21 8.19 -92.71 -0.76 -5.97 16 48 H 0.09 -0.73 8.14 -2.39 -0.02 -0.75 16 49 H 0.10 -1.03 8.14 -2.39 -0.02 -1.05 16 50 H 0.08 -0.44 8.10 -2.39 -0.02 -0.46 16 51 H 0.07 -0.46 6.47 -2.39 -0.02 -0.48 16 Total: 0.00 -24.16 401.69 1.10 -23.06 By element: Atomic # 1 Polarization: -16.03 SS G_CDS: -0.96 Total: -16.98 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: 5.19 Total: 10.06 kcal Atomic # 7 Polarization: 4.38 SS G_CDS: -2.99 Total: 1.39 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: -2.24 Total: -16.67 kcal Atomic # 14 Polarization: -2.95 SS G_CDS: 2.10 Total: -0.85 kcal Total: -24.16 1.10 -23.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14048278_10543058.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.150 kcal (2) G-P(sol) polarization free energy of solvation -24.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds