Wall clock time and date at job start Tue Mar 9 2021 14:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46984 * 2 1 4 4 C 1.53005 * 109.46711 * 240.00265 * 2 1 3 5 5 Si 1.86298 * 109.47402 * 120.00641 * 2 1 3 6 6 C 1.86305 * 109.46680 * 299.99618 * 5 2 1 7 7 C 1.86301 * 109.47257 * 179.97438 * 5 2 1 8 8 O 1.63096 * 109.47342 * 59.99453 * 5 2 1 9 9 C 1.42902 * 114.00118 * 180.02562 * 8 5 2 10 10 C 1.52998 * 109.47357 * 179.97438 * 9 8 5 11 11 C 1.53494 * 114.20722 * 184.99894 * 10 9 8 12 12 N 1.47070 * 87.98441 * 220.34836 * 11 10 9 13 13 C 1.34778 * 136.05413 * 207.08545 * 12 11 10 14 14 O 1.21653 * 120.00172 * 5.31939 * 13 12 11 15 15 C 1.47047 * 119.99643 * 185.31545 * 13 12 11 16 16 C 1.36229 * 123.48757 * 186.23006 * 15 13 12 17 17 Cl 1.73599 * 124.60875 * 359.75236 * 16 15 13 18 18 S 1.70450 * 110.78637 * 179.73155 * 16 15 13 19 19 C 1.75494 * 92.46782 * 0.02562 * 18 16 15 20 20 C 1.50697 * 124.68738 * 179.97438 * 19 18 16 21 21 O 1.42901 * 109.47078 * 244.96997 * 20 19 18 22 22 Si 1.86299 * 109.47099 * 4.97161 * 20 19 18 23 23 H 1.48498 * 109.47163 * 59.99980 * 22 20 19 24 24 H 1.48503 * 109.47111 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47148 * 300.00222 * 22 20 19 26 26 C 1.32701 * 110.62725 * 359.97438 * 19 18 16 27 27 C 1.47065 * 87.88740 * 27.34292 * 12 11 10 28 28 H 1.09006 * 109.46894 * 299.99814 * 1 2 3 29 29 H 1.09000 * 109.47370 * 59.99448 * 1 2 3 30 30 H 1.09003 * 109.46882 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.46766 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47033 * 299.99869 * 3 2 1 33 33 H 1.08993 * 109.47138 * 60.00949 * 3 2 1 34 34 H 1.09006 * 109.47236 * 300.00083 * 4 2 1 35 35 H 1.08995 * 109.47320 * 59.99734 * 4 2 1 36 36 H 1.08995 * 109.46975 * 180.02562 * 4 2 1 37 37 H 1.09000 * 109.46768 * 180.02562 * 6 5 2 38 38 H 1.09006 * 109.47256 * 299.99863 * 6 5 2 39 39 H 1.08999 * 109.47584 * 60.00203 * 6 5 2 40 40 H 1.08993 * 109.46579 * 299.99876 * 7 5 2 41 41 H 1.09003 * 109.46858 * 59.99549 * 7 5 2 42 42 H 1.08995 * 109.47300 * 179.97438 * 7 5 2 43 43 H 1.09004 * 109.47162 * 59.99703 * 9 8 5 44 44 H 1.09001 * 109.47012 * 300.00044 * 9 8 5 45 45 H 1.09002 * 113.28149 * 318.06718 * 10 9 8 46 46 H 1.08993 * 113.46976 * 105.56728 * 11 10 9 47 47 H 1.08998 * 113.46407 * 335.12414 * 11 10 9 48 48 H 1.09003 * 109.47221 * 124.97394 * 20 19 18 49 49 H 0.96707 * 113.99428 * 59.99941 * 21 20 19 50 50 H 1.08002 * 123.44874 * 180.02562 * 26 19 18 51 51 H 1.08996 * 113.46867 * 87.43517 * 27 12 11 52 52 H 1.09000 * 113.46822 * 217.88257 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 14 2.1511 -0.8784 1.5210 6 6 1.5302 -0.0001 3.0422 7 6 4.0141 -0.8790 1.5206 8 8 1.6074 -2.4160 1.5210 9 6 2.0287 -3.1815 2.6517 10 6 1.4628 -4.5992 2.5474 11 6 1.7489 -5.4826 3.7697 12 7 2.0018 -6.5950 2.8415 13 6 1.9177 -7.9392 2.8920 14 8 1.4591 -8.4833 3.8787 15 6 2.3800 -8.7479 1.7542 16 6 2.2171 -10.0982 1.6764 17 17 1.4530 -11.0710 2.8944 18 16 2.8651 -10.7028 0.2204 19 6 3.3717 -9.1069 -0.3052 20 6 4.0759 -8.8155 -1.6053 21 8 5.3930 -8.3313 -1.3355 22 14 4.1830 -10.3763 -2.6168 23 1 2.8143 -10.8795 -2.8971 24 1 4.8775 -10.0894 -3.8977 25 1 4.9433 -11.4044 -1.8617 26 6 3.0491 -8.1921 0.6004 27 6 2.3933 -5.5955 1.8362 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9562 0.8900 34 1 1.6765 -1.7489 -1.2494 35 1 1.6766 -0.2074 -2.1393 36 1 3.1299 -0.7217 -1.2492 37 1 1.8939 -0.5138 3.9321 38 1 1.8936 1.0276 3.0423 39 1 0.4402 -0.0001 3.0423 40 1 4.3769 -1.3930 0.6306 41 1 4.3778 0.1485 1.5204 42 1 4.3775 -1.3925 2.4107 43 1 1.6639 -2.7114 3.5651 44 1 3.1175 -3.2254 2.6756 45 1 0.4268 -4.6258 2.2094 46 1 0.8780 -5.6380 4.4063 47 1 2.6319 -5.1755 4.3300 48 1 3.5178 -8.0609 -2.1596 49 1 5.9473 -8.9527 -0.8437 50 1 3.2645 -7.1399 0.4866 51 1 3.4462 -5.3181 1.8869 52 1 2.0713 -5.8470 0.8257 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14186584_13431040.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:19:51 Heat of formation + Delta-G solvation = -89.790156 kcal Electronic energy + Delta-G solvation = -32031.178874 eV Core-core repulsion = 27694.481152 eV Total energy + Delta-G solvation = -4336.697722 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 405.116 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.68315 -39.72571 -38.73110 -38.00287 -37.38526 -36.97321 -36.75255 -32.03369 -31.41890 -29.30359 -28.97714 -27.80410 -27.69841 -27.29947 -27.12233 -26.62465 -24.69098 -22.15439 -21.21886 -20.34902 -20.16215 -19.18905 -18.14931 -17.69760 -17.44579 -17.14816 -17.06418 -16.36849 -16.05996 -16.00968 -15.82952 -15.51372 -15.17349 -14.87769 -14.78083 -14.69390 -14.52601 -14.40351 -14.11785 -14.07167 -13.79157 -13.54725 -13.45875 -13.30843 -13.23607 -13.08235 -12.94532 -12.88476 -12.86589 -12.65077 -12.46576 -12.42880 -12.32684 -12.24541 -12.14601 -11.92049 -11.78372 -11.62282 -11.57861 -11.26559 -11.20611 -10.86302 -10.55137 -10.20445 -10.03112 -9.98009 -9.85501 -9.61964 -0.69910 -0.27310 0.39983 0.68830 0.97097 1.07651 1.39961 1.48051 1.55996 1.80246 1.88852 1.90528 2.10515 2.21943 2.55797 3.20511 3.30746 3.53030 3.64952 3.81918 3.97458 4.04797 4.19424 4.19483 4.24359 4.37016 4.46452 4.50985 4.53127 4.56709 4.60844 4.63222 4.74035 4.80715 4.82079 4.83063 4.86571 4.87290 4.88677 4.89226 4.91253 4.98231 5.06925 5.15806 5.16599 5.25073 5.29848 5.41618 5.48500 5.51534 5.63177 5.68777 5.74151 6.57129 6.63682 6.98180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.387 4.387 3 C -0.142 4.142 4 C -0.136 4.136 5 Si 1.329 2.671 6 C -0.524 4.524 7 C -0.518 4.518 8 O -0.633 6.633 9 C 0.087 3.913 10 C -0.110 4.110 11 C 0.104 3.896 12 N -0.646 5.646 13 C 0.594 3.406 14 O -0.566 6.566 15 C -0.161 4.161 16 C -0.136 4.136 17 Cl 0.003 6.997 18 S 0.234 5.766 19 C -0.224 4.224 20 C -0.027 4.027 21 O -0.539 6.539 22 Si 0.898 3.102 23 H -0.240 1.240 24 H -0.232 1.232 25 H -0.233 1.233 26 C -0.072 4.072 27 C 0.094 3.906 28 H 0.057 0.943 29 H 0.044 0.956 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.046 0.954 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.043 0.957 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.110 0.890 46 H 0.073 0.927 47 H 0.110 0.890 48 H 0.151 0.849 49 H 0.392 0.608 50 H 0.185 0.815 51 H 0.116 0.884 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.077 4.095 -3.988 7.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.429 4.429 3 C -0.199 4.199 4 C -0.194 4.194 5 Si 1.457 2.543 6 C -0.625 4.625 7 C -0.620 4.620 8 O -0.593 6.593 9 C 0.011 3.989 10 C -0.129 4.129 11 C -0.018 4.018 12 N -0.380 5.380 13 C 0.384 3.616 14 O -0.446 6.446 15 C -0.180 4.180 16 C -0.283 4.283 17 Cl 0.032 6.968 18 S 0.500 5.500 19 C -0.341 4.341 20 C -0.141 4.141 21 O -0.346 6.346 22 Si 0.719 3.281 23 H -0.163 1.163 24 H -0.155 1.155 25 H -0.156 1.156 26 C -0.100 4.100 27 C -0.028 4.028 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.062 0.938 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.102 0.898 45 H 0.128 0.872 46 H 0.092 0.908 47 H 0.128 0.872 48 H 0.168 0.832 49 H 0.241 0.759 50 H 0.202 0.798 51 H 0.134 0.866 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.524 1.593 -4.944 6.277 hybrid contribution -0.244 1.464 1.705 2.260 sum 3.280 3.057 -3.240 5.531 Atomic orbital electron populations 1.21546 0.94539 1.01826 1.01542 1.26011 1.00182 1.02910 1.13761 1.21609 1.01320 0.95016 1.01945 1.21540 1.01099 1.00177 0.96538 0.75953 0.62456 0.52631 0.63229 1.27195 1.06761 1.09813 1.18742 1.27101 1.25087 1.04926 1.04912 1.85344 1.79617 1.46298 1.48014 1.22105 0.99347 0.89894 0.87536 1.22982 1.01416 0.92637 0.95874 1.23212 1.02631 0.81784 0.94171 1.49406 1.65980 1.02834 1.19763 1.17166 0.78150 0.80405 0.85890 1.90851 1.47348 1.71398 1.35014 1.20317 1.07570 0.91599 0.98514 1.25625 1.06490 0.96213 0.99975 1.98421 1.78531 1.67855 1.52001 1.83351 1.51958 1.08406 1.06279 1.25062 1.09669 0.95385 1.03997 1.24370 0.85122 1.10770 0.93818 1.86534 1.21906 1.47355 1.78783 0.86187 0.83260 0.76365 0.82311 1.16312 1.15467 1.15648 1.21428 0.96547 1.02273 0.89719 1.23708 1.01060 0.83613 0.94384 0.92382 0.93727 0.92258 0.91725 0.93468 0.92071 0.92040 0.93814 0.91917 0.90810 0.90831 0.91446 0.90755 0.90842 0.90633 0.90551 0.89841 0.87188 0.90842 0.87164 0.83202 0.75877 0.79819 0.86590 0.88616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.18 7.85 71.98 0.56 0.74 16 2 C -0.39 1.15 0.53 -10.79 -0.01 1.14 16 3 C -0.14 0.41 7.85 71.98 0.56 0.97 16 4 C -0.14 0.33 7.85 71.98 0.56 0.89 16 5 Si 1.33 -8.29 8.45 68.60 0.58 -7.71 16 6 C -0.52 2.38 8.50 113.37 0.96 3.35 16 7 C -0.52 3.19 8.50 113.37 0.96 4.16 16 8 O -0.63 3.34 8.56 -148.98 -1.28 2.07 16 9 C 0.09 -0.73 5.04 71.98 0.36 -0.37 16 10 C -0.11 0.69 4.38 -10.37 -0.05 0.64 16 11 C 0.10 -0.32 8.19 83.18 0.68 0.36 16 12 N -0.65 -1.06 3.68 -862.05 -3.17 -4.23 16 13 C 0.59 5.45 8.02 86.55 0.69 6.14 16 14 O -0.57 -9.72 15.72 -4.20 -0.07 -9.79 16 15 C -0.16 -0.87 5.98 -19.84 -0.12 -0.99 16 16 C -0.14 -0.88 6.87 67.35 0.46 -0.42 16 17 Cl 0.00 0.03 27.22 -2.72 -0.07 -0.04 16 18 S 0.23 0.08 20.19 -56.49 -1.14 -1.06 16 19 C -0.22 0.66 5.65 24.51 0.14 0.80 16 20 C -0.03 0.18 2.94 71.24 0.21 0.39 16 21 O -0.54 3.17 12.88 -148.98 -1.92 1.25 16 22 Si 0.90 -4.37 26.20 68.60 1.80 -2.57 16 23 H -0.24 0.76 7.11 99.48 0.71 1.47 16 24 H -0.23 0.64 7.11 99.48 0.71 1.35 16 25 H -0.23 1.02 7.11 99.48 0.71 1.72 16 26 C -0.07 0.11 9.31 22.69 0.21 0.32 16 27 C 0.09 -0.59 6.01 83.27 0.50 -0.09 16 28 H 0.06 -0.13 7.79 -2.38 -0.02 -0.15 16 29 H 0.04 0.01 8.14 -2.39 -0.02 -0.01 16 30 H 0.06 -0.07 7.97 -2.39 -0.02 -0.09 16 31 H 0.06 -0.29 7.79 -2.38 -0.02 -0.31 16 32 H 0.05 -0.05 8.14 -2.39 -0.02 -0.07 16 33 H 0.06 -0.24 7.79 -2.39 -0.02 -0.26 16 34 H 0.06 -0.16 7.97 -2.38 -0.02 -0.18 16 35 H 0.04 -0.03 8.14 -2.39 -0.02 -0.05 16 36 H 0.06 -0.26 7.79 -2.39 -0.02 -0.27 16 37 H 0.07 -0.43 7.48 -2.39 -0.02 -0.45 16 38 H 0.07 -0.32 7.79 -2.38 -0.02 -0.34 16 39 H 0.07 -0.22 7.79 -2.39 -0.02 -0.23 16 40 H 0.07 -0.44 7.79 -2.39 -0.02 -0.46 16 41 H 0.07 -0.41 7.79 -2.39 -0.02 -0.43 16 42 H 0.07 -0.58 7.48 -2.39 -0.02 -0.60 16 43 H 0.08 -0.81 7.21 -2.38 -0.02 -0.82 16 44 H 0.08 -1.04 6.87 -2.39 -0.02 -1.06 16 45 H 0.11 -0.45 8.14 -2.39 -0.02 -0.47 16 46 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 47 H 0.11 -0.80 8.10 -2.39 -0.02 -0.82 16 48 H 0.15 -1.49 7.96 -2.39 -0.02 -1.51 16 49 H 0.39 -4.47 8.70 -74.05 -0.64 -5.11 16 50 H 0.18 -1.14 5.05 -2.91 -0.01 -1.15 16 51 H 0.12 -1.25 7.87 -2.39 -0.02 -1.27 16 52 H 0.10 -0.73 6.74 -2.39 -0.02 -0.75 16 Total: 0.00 -18.89 440.11 2.48 -16.41 By element: Atomic # 1 Polarization: -13.40 SS G_CDS: 1.04 Total: -12.37 kcal Atomic # 6 Polarization: 11.32 SS G_CDS: 6.71 Total: 18.03 kcal Atomic # 7 Polarization: -1.06 SS G_CDS: -3.17 Total: -4.23 kcal Atomic # 8 Polarization: -3.20 SS G_CDS: -3.26 Total: -6.46 kcal Atomic # 14 Polarization: -12.66 SS G_CDS: 2.38 Total: -10.28 kcal Atomic # 16 Polarization: 0.08 SS G_CDS: -1.14 Total: -1.06 kcal Atomic # 17 Polarization: 0.03 SS G_CDS: -0.07 Total: -0.04 kcal Total: -18.89 2.48 -16.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14186584_13431040.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.378 kcal (2) G-P(sol) polarization free energy of solvation -18.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds