Wall clock time and date at job start Tue Mar 9 2021 14:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35661 * 117.00394 * 2 1 4 4 C 1.38405 * 120.11718 * 0.23246 * 3 2 1 5 5 C 1.38723 * 120.03007 * 180.27661 * 4 3 2 6 6 O 1.35721 * 119.86431 * 179.76375 * 5 4 3 7 7 C 1.42901 * 116.99476 * 359.97438 * 6 5 4 8 8 C 1.39145 * 120.27476 * 359.74467 * 5 4 3 9 9 C 1.50704 * 119.88123 * 179.97438 * 8 5 4 10 10 O 1.42896 * 109.46740 * 75.01918 * 9 8 5 11 11 Si 1.86297 * 109.47228 * 195.02180 * 9 8 5 12 12 C 1.37583 * 120.24007 * 0.02562 * 8 5 4 13 13 C 1.39814 * 119.96253 * 359.97438 * 12 8 5 14 14 C 1.47309 * 120.13635 * 179.97438 * 13 12 8 15 15 O 1.21611 * 120.00480 * 179.97438 * 14 13 12 16 16 N 1.34777 * 119.99749 * 359.97438 * 14 13 12 17 17 C 1.46498 * 119.99929 * 180.02562 * 16 14 13 18 18 H 1.08998 * 112.84967 * 336.18904 * 17 16 14 19 19 C 1.53950 * 113.61390 * 107.46691 * 17 16 14 20 20 C 1.53777 * 87.02353 * 89.19853 * 19 17 16 21 21 H 1.09007 * 113.61584 * 270.77242 * 20 19 17 22 22 C 1.50697 * 113.62019 * 139.95006 * 20 19 17 23 23 C 1.38200 * 119.99378 * 320.59258 * 22 20 19 24 24 C 1.38342 * 119.99226 * 180.29862 * 23 22 20 25 25 Br 1.89102 * 120.01173 * 179.97438 * 24 23 22 26 26 C 1.38304 * 119.98000 * 359.97209 * 24 23 22 27 27 C 1.38238 * 119.98920 * 0.02562 * 26 24 23 28 28 C 1.38218 * 120.01172 * 0.02562 * 27 26 24 29 29 C 1.53784 * 113.61193 * 205.00050 * 17 16 14 30 30 H 1.08998 * 109.47160 * 300.00507 * 1 2 3 31 31 H 1.09003 * 109.47048 * 60.00175 * 1 2 3 32 32 H 1.08994 * 109.46992 * 180.02562 * 1 2 3 33 33 H 1.08001 * 119.98491 * 359.97438 * 4 3 2 34 34 H 1.09002 * 109.46672 * 60.00570 * 7 6 5 35 35 H 1.09009 * 109.46535 * 179.97438 * 7 6 5 36 36 H 1.08998 * 109.47497 * 299.99814 * 7 6 5 37 37 H 1.08996 * 109.46966 * 315.02334 * 9 8 5 38 38 H 0.96697 * 114.00437 * 299.99783 * 10 9 8 39 39 H 1.48494 * 110.00223 * 59.99740 * 11 9 8 40 40 H 1.48501 * 109.99933 * 181.32207 * 11 9 8 41 41 H 1.08000 * 120.01602 * 179.97438 * 12 8 5 42 42 H 0.97001 * 119.99768 * 359.97438 * 16 14 13 43 43 H 1.09003 * 113.66997 * 334.66738 * 19 17 16 44 44 H 1.08996 * 113.61685 * 203.71807 * 19 17 16 45 45 H 1.08002 * 120.00066 * 0.27440 * 23 22 20 46 46 H 1.07994 * 120.00699 * 179.97438 * 26 24 23 47 47 H 1.08001 * 119.99931 * 180.02562 * 27 26 24 48 48 H 1.08003 * 119.99376 * 179.97438 * 28 27 26 49 49 H 1.08997 * 113.61594 * 156.25388 * 29 17 16 50 50 H 1.08994 * 113.61829 * 25.34355 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2936 2.3711 0.0049 5 6 1.9253 3.6061 -0.0009 6 8 1.1852 4.7438 -0.0010 7 6 -0.2358 4.5931 0.0045 8 6 3.3146 3.6834 -0.0063 9 6 3.9916 5.0298 -0.0132 10 8 3.8992 5.6159 1.2867 11 14 5.7845 4.8210 -0.4743 12 6 4.0725 2.5351 -0.0064 13 6 3.4462 1.2851 -0.0006 14 6 4.2539 0.0532 -0.0013 15 8 3.7066 -1.0328 0.0043 16 7 5.5995 0.1297 -0.0080 17 6 6.4028 -1.0954 -0.0093 18 1 5.8684 -1.9524 0.4008 19 6 7.0884 -1.3820 -1.3576 20 6 8.2713 -0.5451 -0.8427 21 1 8.1863 0.5176 -1.0705 22 6 9.6179 -1.1155 -1.2061 23 6 9.8240 -2.4814 -1.1633 24 6 11.0621 -3.0046 -1.4909 25 35 11.3448 -4.8734 -1.4319 26 6 12.0929 -2.1604 -1.8617 27 6 11.8859 -0.7943 -1.9042 28 6 10.6491 -0.2719 -1.5758 29 6 7.8114 -0.9090 0.5790 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 0.2150 2.3165 0.0082 34 1 -0.5397 4.0461 0.8970 35 1 -0.7054 5.5769 0.0043 36 1 -0.5462 4.0418 -0.8830 37 1 3.5027 5.6786 -0.7399 38 1 2.9923 5.7542 1.5923 39 1 5.8942 4.2121 -1.8243 40 1 6.4709 6.1377 -0.4536 41 1 5.1505 2.5993 -0.0110 42 1 6.0360 0.9959 -0.0128 43 1 6.5776 -0.9370 -2.2115 44 1 7.3310 -2.4337 -1.5093 45 1 9.0187 -3.1402 -0.8737 46 1 13.0597 -2.5683 -2.1171 47 1 12.6907 -0.1349 -2.1942 48 1 10.4878 0.7955 -1.6088 49 1 8.2520 -1.8312 0.9577 50 1 7.8834 -0.0827 1.2861 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14189268_12297780.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:46:08 Heat of formation + Delta-G solvation = -47.562765 kcal Electronic energy + Delta-G solvation = -35488.576353 eV Core-core repulsion = 30688.696878 eV Total energy + Delta-G solvation = -4799.879475 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 448.076 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.17010 -41.40165 -40.40764 -39.88459 -38.71795 -38.34061 -36.99469 -34.62601 -33.28203 -32.26245 -32.13203 -31.23454 -30.18806 -29.00455 -28.22766 -26.63069 -26.35024 -26.05579 -24.65392 -23.50665 -22.93267 -22.30271 -21.62302 -20.23307 -19.88177 -18.79877 -18.53680 -17.99002 -17.71530 -17.31217 -17.17794 -16.78992 -16.61358 -16.42981 -16.21174 -16.09971 -15.78690 -15.77602 -15.53727 -15.34413 -15.04070 -14.63801 -14.45662 -14.32325 -14.23326 -14.15742 -14.04575 -13.57160 -13.46942 -13.38135 -13.26467 -12.86284 -12.68445 -12.56032 -12.53097 -12.29603 -12.15643 -11.95529 -11.82260 -11.67245 -11.47961 -11.35083 -11.28081 -11.24401 -11.12099 -10.86885 -10.08549 -9.92931 -9.77856 -9.56227 -9.20532 -4.93527 -0.29020 0.07106 0.16476 0.32678 0.68161 1.38538 1.62261 1.74522 2.00912 2.04656 2.08929 2.16749 2.59279 2.64064 3.43506 3.49674 3.53193 3.66888 3.70582 3.72682 3.78952 3.90738 3.94599 4.02828 4.08327 4.11988 4.16394 4.21796 4.25702 4.26373 4.28446 4.31030 4.35468 4.35926 4.47991 4.62045 4.64593 4.66407 4.74565 4.76497 4.83157 4.86105 4.96016 5.00192 5.02008 5.05705 5.09759 5.21434 5.26720 5.28495 5.42834 5.56883 5.70335 5.90923 5.97057 6.25645 6.57154 6.61945 7.27920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.304 6.304 3 C 0.215 3.785 4 C -0.307 4.307 5 C 0.204 3.796 6 O -0.318 6.318 7 C 0.013 3.987 8 C -0.199 4.199 9 C -0.077 4.077 10 O -0.546 6.546 11 Si 0.804 3.196 12 C 0.009 3.991 13 C -0.224 4.224 14 C 0.566 3.434 15 O -0.563 6.563 16 N -0.699 5.699 17 C 0.118 3.882 18 H 0.083 0.917 19 C -0.146 4.146 20 C -0.065 4.065 21 H 0.126 0.874 22 C -0.067 4.067 23 C -0.099 4.099 24 C -0.103 4.103 25 Br -0.065 7.065 26 C -0.109 4.109 27 C -0.115 4.115 28 C -0.101 4.101 29 C -0.125 4.125 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.112 0.888 33 H 0.164 0.836 34 H 0.071 0.929 35 H 0.123 0.877 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.373 0.627 39 H -0.251 1.251 40 H -0.294 1.294 41 H 0.167 0.833 42 H 0.413 0.587 43 H 0.069 0.931 44 H 0.090 0.910 45 H 0.133 0.867 46 H 0.135 0.865 47 H 0.151 0.849 48 H 0.155 0.845 49 H 0.096 0.904 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.841 5.598 0.497 5.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.215 6.215 3 C 0.165 3.835 4 C -0.326 4.326 5 C 0.157 3.843 6 O -0.230 6.230 7 C -0.081 4.081 8 C -0.200 4.200 9 C -0.184 4.184 10 O -0.353 6.353 11 Si 0.704 3.296 12 C -0.009 4.009 13 C -0.228 4.228 14 C 0.355 3.645 15 O -0.443 6.443 16 N -0.352 5.352 17 C 0.012 3.988 18 H 0.102 0.898 19 C -0.185 4.185 20 C -0.083 4.083 21 H 0.144 0.856 22 C -0.068 4.068 23 C -0.118 4.118 24 C -0.183 4.183 25 Br 0.020 6.980 26 C -0.129 4.129 27 C -0.133 4.133 28 C -0.119 4.119 29 C -0.163 4.163 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.131 0.869 33 H 0.182 0.818 34 H 0.089 0.911 35 H 0.141 0.859 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.222 0.778 39 H -0.176 1.176 40 H -0.222 1.222 41 H 0.184 0.816 42 H 0.252 0.748 43 H 0.088 0.912 44 H 0.108 0.892 45 H 0.151 0.849 46 H 0.153 0.847 47 H 0.169 0.831 48 H 0.173 0.827 49 H 0.114 0.886 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.762 4.293 -0.074 4.361 hybrid contribution -2.221 0.960 -0.465 2.464 sum -2.983 5.253 -0.539 6.065 Atomic orbital electron populations 1.23469 0.76542 1.05762 1.02624 1.86370 1.23178 1.25880 1.86033 1.19001 0.91146 0.84770 0.88556 1.21411 1.02030 0.90733 1.18472 1.18904 0.90693 0.85142 0.89602 1.86037 1.21405 1.28626 1.86932 1.23484 0.75847 1.06064 1.02701 1.19572 0.90740 0.96969 1.12754 1.25520 1.14519 0.90205 0.88178 1.86680 1.33058 1.83341 1.32203 0.92643 0.72937 0.83132 0.80879 1.20860 0.99840 0.88768 0.91390 1.19172 0.90851 0.93837 1.18940 1.18010 0.82566 0.88245 0.75664 1.90822 1.72358 1.30282 1.50805 1.45416 1.04795 1.09906 1.75089 1.21845 0.91634 0.87830 0.97498 0.89841 1.23593 0.96255 1.01125 0.97507 1.21688 0.89116 1.00985 0.96544 0.85573 1.19865 0.96200 0.92212 0.98484 1.21082 0.95325 0.96034 0.99391 1.21927 0.97857 0.90203 1.08283 1.96754 1.97070 1.06366 1.97812 1.21337 0.98415 0.94097 0.99068 1.21488 0.98531 0.94307 0.99012 1.21575 0.92131 1.01403 0.96776 1.23393 0.92611 1.04077 0.96221 0.90959 0.91090 0.86947 0.81849 0.91053 0.85915 0.91460 0.91292 0.77808 1.17626 1.22160 0.81631 0.74829 0.91223 0.89201 0.84905 0.84713 0.83097 0.82705 0.88562 0.88273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.02 9.81 113.37 1.11 1.09 16 2 O -0.30 -2.39 8.56 -68.81 -0.59 -2.98 16 3 C 0.21 1.17 6.70 22.82 0.15 1.32 16 4 C -0.31 -0.16 8.01 22.43 0.18 0.02 16 5 C 0.20 0.14 6.62 22.60 0.15 0.29 16 6 O -0.32 0.46 9.36 -90.43 -0.85 -0.39 16 7 C 0.01 -0.10 9.80 113.37 1.11 1.01 16 8 C -0.20 -0.08 5.28 -19.80 -0.10 -0.19 16 9 C -0.08 0.00 2.32 71.24 0.17 0.17 16 10 O -0.55 -0.83 12.65 -148.98 -1.89 -2.72 16 11 Si 0.80 -2.62 30.16 68.60 2.07 -0.55 16 12 C 0.01 -0.01 8.14 22.50 0.18 0.17 16 13 C -0.22 -0.98 5.89 -20.00 -0.12 -1.10 16 14 C 0.57 3.96 7.76 86.63 0.67 4.63 16 15 O -0.56 -8.97 14.75 16.89 0.25 -8.72 16 16 N -0.70 0.73 5.21 -443.14 -2.31 -1.58 16 17 C 0.12 -0.10 4.33 45.58 0.20 0.09 16 18 H 0.08 0.37 7.46 -2.39 -0.02 0.35 16 19 C -0.15 0.28 7.27 31.18 0.23 0.51 16 20 C -0.07 0.39 3.85 -11.01 -0.04 0.35 16 21 H 0.13 -1.33 8.09 -2.38 -0.02 -1.35 16 22 C -0.07 0.18 5.29 -19.87 -0.11 0.07 16 23 C -0.10 -0.06 8.27 22.29 0.18 0.12 16 24 C -0.10 -0.28 6.22 22.31 0.14 -0.14 16 25 Br -0.07 -0.27 33.70 -20.37 -0.69 -0.96 16 26 C -0.11 -0.07 9.79 22.29 0.22 0.15 16 27 C -0.11 0.32 10.05 22.26 0.22 0.54 16 28 C -0.10 0.42 9.71 22.27 0.22 0.64 16 29 C -0.13 0.72 7.29 31.12 0.23 0.95 16 30 H 0.07 -0.37 7.65 -2.39 -0.02 -0.39 16 31 H 0.07 -0.35 7.67 -2.39 -0.02 -0.37 16 32 H 0.11 -0.38 8.14 -2.39 -0.02 -0.40 16 33 H 0.16 -0.75 4.50 -2.91 -0.01 -0.76 16 34 H 0.07 -0.69 7.65 -2.39 -0.02 -0.70 16 35 H 0.12 -1.35 8.14 -2.38 -0.02 -1.37 16 36 H 0.07 -0.61 7.65 -2.39 -0.02 -0.63 16 37 H 0.07 0.05 7.82 -2.39 -0.02 0.04 16 38 H 0.37 -0.76 8.59 -74.06 -0.64 -1.40 16 39 H -0.25 0.57 7.11 99.48 0.71 1.27 16 40 H -0.29 -1.17 7.11 99.48 0.71 -0.46 16 41 H 0.17 -1.34 3.43 -2.91 -0.01 -1.35 16 42 H 0.41 -3.36 6.72 -92.71 -0.62 -3.98 16 43 H 0.07 -0.02 8.14 -2.39 -0.02 -0.04 16 44 H 0.09 -0.08 6.40 -2.39 -0.02 -0.10 16 45 H 0.13 -0.02 6.73 -2.91 -0.02 -0.04 16 46 H 0.13 -0.13 8.06 -2.91 -0.02 -0.15 16 47 H 0.15 -1.07 8.06 -2.91 -0.02 -1.10 16 48 H 0.16 -1.49 8.05 -2.91 -0.02 -1.51 16 49 H 0.10 -0.46 7.63 -2.39 -0.02 -0.47 16 50 H 0.10 -0.87 8.14 -2.39 -0.02 -0.89 16 Total: 0.00 -23.80 425.70 0.79 -23.01 By element: Atomic # 1 Polarization: -15.61 SS G_CDS: -0.20 Total: -15.81 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: 4.99 Total: 10.70 kcal Atomic # 7 Polarization: 0.73 SS G_CDS: -2.31 Total: -1.58 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: -3.07 Total: -14.81 kcal Atomic # 14 Polarization: -2.62 SS G_CDS: 2.07 Total: -0.55 kcal Atomic # 35 Polarization: -0.27 SS G_CDS: -0.69 Total: -0.96 kcal Total: -23.80 0.79 -23.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14189268_12297780.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.557 kcal (2) G-P(sol) polarization free energy of solvation -23.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds